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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005260 ID=TCONS_00005260|Name=TCONS_00005260|organism=Clytia hemisphaerica|type=transcript|length=1849bp
AAGTAACTAAACGTGTAGCGACTTTCTTTCAACAAAACTATCTCCGCCTC
TTTCTTGCTGGGCAAGGCGAATTGTCACAGTTGGTGCATTTTGAATGGTA
CCACAAAAAATCAAAGGCCTCCTCTTTTAACTTGTctcatttattcattt
atttgagggctttCTTAGACAGTTGAGCGCTCAATGTTGGCGAAGAAGGT
TGCATGTCATGAGCTTCAAAGTTTCATTTAAGTGTTGTAAGCTGTAACAG
AAGATTTTGAGGGCCAGGAAAGCATTTGTTTGAAGGTTGATTTACGTTGG
TTGtaaataattaaatttttaaaattgagtTAAATAGATAAATGAACAGA
GTCTCCAAAAAGTAAAAGCAAAACGGAAAGGATGATGAAATAGAGAGAAA
AAGGTCCATCGGTTGGTTCAAACGTTTTGTAGGATGCTTCTTTCAGAAGT
GAAGatgaaagctttttttctaatgtGAGAATTTTCAGGCTCgataaaga
gaattttttcgTTTTCACACTGATCTGATAATGattggaaaatgaagatt
tcaaaatttgaaagatacTTAActaatggtttctttttttcgtagatctt
catttgaaaaaaaactgataGAGGGACAAATTAGTCGAGGATGAATGGTA
CATCGAATTTGACAAACCATAGCAATGATGAgacagaaaaacacaatttc
accACTATGCAGGTTTTCAGTATGGCGGCATTTAGTGTTATCTTATTCTT
GGGATCTCTTGGTAACTTGTTGGTTATTTACGTTTATGGTTTTACCGGTC
GCCGAAGATTTCGAAAGTTCGAAAAGCTGATGTTGATGTTGGGCGTGGTT
GACTTCATCGCATCCATCACCAACCCTGCTTACTTTCTCTATCGTATCGC
ATCCCGAGGTGTTTGGCAACTCGGCTATGTCCCGTGCAAAATCATCCCAG
CCTTAGGCCCTATCTTCACGGGCATTTCTTTAGGAATAATTTTAATAATG
GCGGTGGACAGAGATCGAGCAATATCAACTCCTTACAAGAACCAATTCCA
CCTGCGCACGATTTACAAAGCAGTCTTCGCAACAATAGTCTTCAGTGTAG
CAATAACCGTACCCTACATTTATCACATAGACATTGTCACCTACGGTTCA
GAACCATATTGCTTGGTAGATGGTGGAGTGGAATACAATGTAATAGTGGT
TGTCATCTTCAGTTTTAGTGACGTCATCTTTCTCCTCATTTTCACGACAA
CGACAGTCAGGATTTTTTCGAAACTTCAGTCCAAAACTACGGCAgccgaa
aatacaaaatcacAAAAGCAAAGAAGACAGGAAAAGaacagaattttgaa
aatgatttttgcgATGGGCTTCATGTTCGTTTTGTGCGTTTTCCCACGTG
ATTTGCTCTTCATCGCATTCTCAATACGCAGAATTTTCCCGCCCGAAATC
CCGATCGGTAACGTCATCGACGTGAACAATGTTTTGAAAGTTCTACATAC
GTCCAACAGTTGCGTCAACGTCTTTCTGTATTCATTTCTGAACGAGAAAT
TCCGCGTGGAAATCATCCGAgtggtaaacaaaagcaaaCGTATTCGAAGG
TCGTTTTACGATTCGTCATTCATGTCTTCATATAGATCAACAACGTCCGA
TAATCATGCCGAAAATGAATTTATTGTCCGAAACAAATTTGACGAACAAA
AACAATTAATGAACGCAAAATGAGACGTACTCAGTGATTCAGCGATTTCA
TGGAACATTATTTCTTCGTTTTATAATATTTATAATAGGTGATTTCTGAC
TATGATTATATGTgaagtaaaaaaattatttttgagcatACACAATCTG Run BLAST on NCBI protein sequence of TCONS_00005260-protein >TCONS_00005260-protein ID=TCONS_00005260-protein|Name=TCONS_00005260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MNGTSNLTNHSNDETEKHNFTTMQVFSMAAFSVILFLGSLGNLLVIYVYG
FTGRRRFRKFEKLMLMLGVVDFIASITNPAYFLYRIASRGVWQLGYVPCK
IIPALGPIFTGISLGIILIMAVDRDRAISTPYKNQFHLRTIYKAVFATIV
FSVAITVPYIYHIDIVTYGSEPYCLVDGGVEYNVIVVVIFSFSDVIFLLI
FTTTTVRIFSKLQSKTTAAENTKSQKQRRQEKNRILKMIFAMGFMFVLCV
FPRDLLFIAFSIRRIFPPEIPIGNVIDVNNVLKVLHTSNSCVNVFLYSFL
NEKFRVEIIRVVNKSKRIRRSFYDSSFMSSYRSTTSDNHAENEFIVRNKF
DEQKQLMNAK Run BLAST on NCBI transcript from alignment at sc0000051:721483..723331 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005260 ID=TCONS_00005260|Name=TCONS_00005260|organism=Clytia hemisphaerica|type=transcript|length=1849bp|location=Sequence derived from alignment at sc0000051:721483..723331 (Clytia hemisphaerica)
CAGATTGTGTatgctcaaaaataatttttttacttcACATATAATCATAG
TCAGAAATCACCTATTATAAATATTATAAAACGAAGAAATAATGTTCCAT
GAAATCGCTGAATCACTGAGTACGTCTCATTTTGCGTTCATTAATTGTTT
TTGTTCGTCAAATTTGTTTCGGACAATAAATTCATTTTCGGCATGATTAT
CGGACGTTGTTGATCTATATGAAGACATGAATGACGAATCGTAAAACGAC
CTTCGAATACGtttgcttttgtttaccacTCGGATGATTTCCACGCGGAA
TTTCTCGTTCAGAAATGAATACAGAAAGACGTTGACGCAACTGTTGGACG
TATGTAGAACTTTCAAAACATTGTTCACGTCGATGACGTTACCGATCGGG
ATTTCGGGCGGGAAAATTCTGCGTATTGAGAATGCGATGAAGAGCAAATC
ACGTGGGAAAACGCACAAAACGAACATGAAGCCCATcgcaaaaatcattt
tcaaaattctgttCTTTTCCTGTCTTCTTTGCTTTTgtgattttgtattt
tcggcTGCCGTAGTTTTGGACTGAAGTTTCGAAAAAATCCTGACTGTCGT
TGTCGTGAAAATGAGGAGAAAGATGACGTCACTAAAACTGAAGATGACAA
CCACTATTACATTGTATTCCACTCCACCATCTACCAAGCAATATGGTTCT
GAACCGTAGGTGACAATGTCTATGTGATAAATGTAGGGTACGGTTATTGC
TACACTGAAGACTATTGTTGCGAAGACTGCTTTGTAAATCGTGCGCAGGT
GGAATTGGTTCTTGTAAGGAGTTGATATTGCTCGATCTCTGTCCACCGCC
ATTATTAAAATTATTCCTAAAGAAATGCCCGTGAAGATAGGGCCTAAGGC
TGGGATGATTTTGCACGGGACATAGCCGAGTTGCCAAACACCTCGGGATG
CGATACGATAGAGAAAGTAAGCAGGGTTGGTGATGGATGCGATGAAGTCA
ACCACGCCCAACATCAACATCAGCTTTTCGAACTTTCGAAATCTTCGGCG
ACCGGTAAAACCATAAACGTAAATAACCAACAAGTTACCAAGAGATCCCA
AGAATAAGATAACACTAAATGCCGCCATACTGAAAACCTGCATAGTggtg
aaattgtgtttttctgtcTCATCATTGCTATGGTTTGTCAAATTCGATGT
ACCATTCATCCTCGACTAATTTGTCCCTCtatcagttttttttcaaatga
agatctacgaaaaaaagaaaccattagTTAAgtatctttcaaattttgaa
atcttcattttccaatCATTATCAGATCAGTGTGAAAAcgaaaaaattct
ctttatcGAGCCTGAAAATTCTCacattagaaaaaaagctttcatCTTCA
CTTCTGAAAGAAGCATCCTACAAAACGTTTGAACCAACCGATGGACCTTT
TTCTCTCTATTTCATCATCCTTTCCGTTTTGCTTTTACTTTTTGGAGACT
CTGTTCATTTATCTATTTAactcaattttaaaaatttaattatttaCAAC
CAACGTAAATCAACCTTCAAACAAATGCTTTCCTGGCCCTCAAAATCTTC
TGTTACAGCTTACAACACTTAAATGAAACTTTGAAGCTCATGACATGCAA
CCTTCTTCGCCAACATTGAGCGCTCAACTGTCTAAGaaagccctcaaata
aatgaataaatgagACAAGTTAAAAGAGGAGGCCTTTGATTTTTTGTGGT
ACCATTCAAAATGCACCAACTGTGACAATTCGCCTTGCCCAGCAAGAAAG
AGGCGGAGATAGTTTTGTTGAAAGAAAGTCGCTACACGTTTAGTTACTT Coding sequence (CDS) from alignment at sc0000051:721483..723331 >TCONS_00005260 ID=TCONS_00005260|Name=TCONS_00005260|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000051:721483..723331 (Clytia hemisphaerica)
TCATTTTGCGTTCATTAATTGTTTTTGTTCGTCAAATTTGTTTCGGACAA
TAAATTCATTTTCGGCATGATTATCGGACGTTGTTGATCTATATGAAGAC
ATGAATGACGAATCGTAAAACGACCTTCGAATACGtttgcttttgtttac
cacTCGGATGATTTCCACGCGGAATTTCTCGTTCAGAAATGAATACAGAA
AGACGTTGACGCAACTGTTGGACGTATGTAGAACTTTCAAAACATTGTTC
ACGTCGATGACGTTACCGATCGGGATTTCGGGCGGGAAAATTCTGCGTAT
TGAGAATGCGATGAAGAGCAAATCACGTGGGAAAACGCACAAAACGAACA
TGAAGCCCATcgcaaaaatcattttcaaaattctgttCTTTTCCTGTCTT
CTTTGCTTTTgtgattttgtattttcggcTGCCGTAGTTTTGGACTGAAG
TTTCGAAAAAATCCTGACTGTCGTTGTCGTGAAAATGAGGAGAAAGATGA
CGTCACTAAAACTGAAGATGACAACCACTATTACATTGTATTCCACTCCA
CCATCTACCAAGCAATATGGTTCTGAACCGTAGGTGACAATGTCTATGTG
ATAAATGTAGGGTACGGTTATTGCTACACTGAAGACTATTGTTGCGAAGA
CTGCTTTGTAAATCGTGCGCAGGTGGAATTGGTTCTTGTAAGGAGTTGAT
ATTGCTCGATCTCTGTCCACCGCCATTATTAAAATTATTCCTAAAGAAAT
GCCCGTGAAGATAGGGCCTAAGGCTGGGATGATTTTGCACGGGACATAGC
CGAGTTGCCAAACACCTCGGGATGCGATACGATAGAGAAAGTAAGCAGGG
TTGGTGATGGATGCGATGAAGTCAACCACGCCCAACATCAACATCAGCTT
TTCGAACTTTCGAAATCTTCGGCGACCGGTAAAACCATAAACGTAAATAA
CCAACAAGTTACCAAGAGATCCCAAGAATAAGATAACACTAAATGCCGCC
ATACTGAAAACCTGCATAGTggtgaaattgtgtttttctgtcTCATCATT
GCTATGGTTTGTCAAATTCGATGTACCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005260-exon-sc0000051-1491911889:721483..723331 | TCONS_00005260-exon-sc0000051-1491911889:721483..723331 | Clytia hemisphaerica | exon |
| TCONS_00005260-exon-sc0000051-1510915933:721483..723331 | TCONS_00005260-exon-sc0000051-1510915933:721483..723331 | Clytia hemisphaerica | exon |
| TCONS_00005260-exon-sc0000051-1575043694:721483..723331 | TCONS_00005260-exon-sc0000051-1575043694:721483..723331 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:721483..723331 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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