TCONS_00005260-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005260-protein
Unique Name	TCONS_00005260-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	360

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005260-protein ID=TCONS_00005260-protein|Name=TCONS_00005260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MNGTSNLTNHSNDETEKHNFTTMQVFSMAAFSVILFLGSLGNLLVIYVYG
FTGRRRFRKFEKLMLMLGVVDFIASITNPAYFLYRIASRGVWQLGYVPCK
IIPALGPIFTGISLGIILIMAVDRDRAISTPYKNQFHLRTIYKAVFATIV
FSVAITVPYIYHIDIVTYGSEPYCLVDGGVEYNVIVVVIFSFSDVIFLLI
FTTTTVRIFSKLQSKTTAAENTKSQKQRRQEKNRILKMIFAMGFMFVLCV
FPRDLLFIAFSIRRIFPPEIPIGNVIDVNNVLKVLHTSNSCVNVFLYSFL
NEKFRVEIIRVVNKSKRIRRSFYDSSFMSSYRSTTSDNHAENEFIVRNKF
DEQKQLMNAK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003001	XLOC_003001	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005260	TCONS_00005260	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 60..81 score: 17.89 coord: 279..305 score: 30.67 coord: 106..128 score: 23.64 coord: 235..259 score: 21.03 coord: 26..50 score: 26.1
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 41..297 e-value: 2.9E-23 score: 82.4
None	No IPR available	GENE3D	1.20.1070.10		coord: 1..355 e-value: 5.8E-51 score: 172.8
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 8..337
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 41..297 score: 25.607

Blast

[Close]

BLAST of TCONS_00005260-protein vs. Swiss-Prot (Human)
Match: FPR3 (N-formyl peptide receptor 3 OS=Homo sapiens GN=FPR3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-16
Identity = 94/348 (27.01%), Postives = 153/348 (43.97%), Query Frame = 0

Query:   16 EKHNFTTMQVFSMAAFSVILFLGSLGNLLVIYVYGFTGRRRFRKFEKLMLMLGVVDFIASITNPAYFLYRIASRGVWQLGYVPCKIIPALGPIFTGISLGIILIMAVDRDRAISTPYKNQFHLRTIYKA---VFATIVFSVAITVP-YIYHIDIVTYGSEPYCLV------DGGVE-YNVIVVVIFSFSDVIFLLIFTTTTVRIFSKLQSKTTAAENTKSQKQRRQ---EKNRILKMIFAMGFMFVLCVFPRDLLFIAFSIRRIFPPEIPIGN----VIDVNNVLKVLHTSNSCVNVFLYSFLNEKFRVEIIRVVNKS-KRIRRSFYDSSFMSSYRSTTSDNHAENEF 344
            E    T + +FS+    V    G LGN LVI+V GF   R       L L L   DF  S   P + +  +A R  W  G   CK++  +  I   +S+ +I I+A+DR   +  P   Q H RT+  A   +    +F++ +T+P +I+   I T   + YC+       D  VE  NV +    + + V  +L F       FS   S  T      + K  R    + +R L++  A+   F +C FP +L+ I   +  ++  E+ +      ++ + N    L   NSC+N  LY F+   F+  +IR +  S +R      DS+  S+  +T++    E E 
Sbjct:   18 EPAGHTVLWIFSLLVHGVTFVFGVLGNGLVIWVAGFRMTRTVNTICYLNLALA--DFSFSAILP-FRMVSVAMREKWPFGSFLCKLVHVMIDINLFVSVYLITIIALDRCICVLHPAWAQNH-RTMSLAKRVMTGLWIFTIVLTLPNFIFWTTISTTNGDTYCIFNFAFWGDTAVERLNVFI----TMAKVFLILHFIIG----FSVPMSIITVCYGIIAAKIHRNHMIKSSRPLRVFAAVVASFFICWFPYELIGI---LMAVWLKEMLLNGKYKIILVLINPTSSLAFFNSCLNPILYVFMGRNFQERLIRSLPTSLERALTEVPDSAQTSNTDTTSASPPEETEL 350

The following BLAST results are available for this feature:

BLAST of TCONS_00005260-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005260-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FPR3	9.456e-16	27.01	N-formyl peptide receptor 3 OS=Homo sapiens GN=FPR...	[more]

You are here

TCONS_00005260-protein (polypeptide) - C. hemisphaerica