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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005147 ID=TCONS_00005147|Name=TCONS_00005147|organism=Clytia hemisphaerica|type=transcript|length=2191bp
ttttgaaaatgtgGCGCAAACAGAATAACGGATGACTGGCAAAACACTTG
GTATCACCGAATCCGCAAGTCTCTTCAACATGAAGGAGTTTTATAAGTGG
GAATTCAACGATGACGAAGAATCAGACGACCGCCACATCATTCATAAATG
GTCGCGCGACCGCATCAAGAAAATGCACGGATTACGAAAATCGTACATGA
GCTTTTTGGTGTATTCATTCCATTTAACAACATTGAAAAGTTTCATtgag
aatttcaatttcatggtGATCCTTCAGATGATCTTAGCTGCTGGTGCCGT
TTGGTTGTTCGATTATTTTGACATTTATTTCAATTTCCATATCGGACTGT
TTGTTTCACCCATCGTATTTCCTCTGGCTTTCTCAATAAACACTGACTTT
CAACGGAGAGAAAAGGTATTGGACGATTTAGCTAACTTTAAATCTTCATC
CATGGTTTTCTTCTTTTGTATGAGGGAATGGAGAAGTGCTTCAGGTTTGG
AGGAAGCTTGGTTAAAAGACATCAAACAAAAGGTCCATAGTATGATGTTC
AACTTGAGAGAATATTTATTGACAGATAAAATGAAAAGACGTGACATTAT
AGCACGCATAATGTATGAGGACTTCAGTGATATTTCACAATTGATCGAGA
AAGTTCGCGCCAGCAAATTACCCGCCAATCCTGCCATTGTATCAAGGTCC
GTACATTTATTGAACATGTTATGTCTGTCATTCGAACGTTTACGAGTCAT
TCGAGAATATCGATCTCCAAGATCCATTCGATCTTTCAACAAAGTGTTAA
TTTTACTTTTACCCATAATCCTTTGCCCATATTTCGTTTATTTGGGACGA
TTGGGTAAGAAGGAGATTAGCATCGGAAACTGGGGGCCTTACTACATCGC
AGTGCTCGTTGCAACAGTATTCGGTGCACTACAAGGAGTCCAAGACAAAT
TGGACGACCCTTTTGATGGAATGTCAGAGGACGATATAAACTTGGACACA
ATTGATGAATGGACTTTCAACTCCTTGAAGTCAGCTGCCGAGAGAAGCAT
TTATACTATTGGTAGATTTCAAGTGAAGAAAGAACAGACCGAGAAACCAC
GATCGAAGAGTATTGTTCAAATGTTACACGAGTTAGAAGCTGAAGAATGC
CCGGAGTCTGACTATGAAGCTCCAATTCTGAAAGCGTCGAAAAGCCCGTT
TAATAATCGGAAAACAGGGAAAAGCcttttcagaaaaagttttaatcaaa
aatcaaagagaCGCGCGGTCGTTCGAAGTCAGACGTTTACCGGCTCTGAT
AAATGGAAGGAAGGACGTAAAAGGTTCAGTTCGACAACTTCACAAGCGTG
GGCCCCTGAAAATCACCCGTATGCAGAAGTTCTTGAGAAGATGTCAGGTG
ACAGTCGTATTGAACGTAAACACACAGTACGTCACCACCCGATCGCAGCA
CGGCAACAAAGTCATGAGCCGCATCCCACACCGAAAGATACGGACCTTCA
ACGGAAAAGCGTCTCCGAAGCTTCTTTAAACACGATTCTCAAAAACGAAA
ATGACCAAGACTCAGATACAGGTGAACATCGAAAGAGTTTGGGTGTAAAG
TTTCAAAACGAGACTGAGTTATTCACTTATGACGAACGAAATAGTTTGAA
CAGTGGTTCCAACAGTCGGCTACCTCTtctaaatgaagaaaaagagaaag
aagaacAGGACAATCGCTTCAAAACGACGAAACTCGAAATGTCACCTTTG
AAAAACGGGGCACGATTTCATAAGAGTGTAGTACCCTCTATGAGCGTGAA
TAGCGCTGATGATGAACTAACGCAAGTCATTGTGGATTCCAGCCCTCCAA
CTAAAGAAGACAATGTCTTCGCttagatatttttttgaatttcttagtTG
ACCTAAGTCCTTTATTTGGAATGTTTTTGAGcggtaattttgaattttga
gaaGGTATGCTCCTTGTGAGAATTTTCACTTGTTTCTTGTTGTACTTCAC
TTGCAAGCAAAGGATTTTGGATTTCTTAACCCGACAAACCGTAGTAACCT
ACTTATTCAAAACCTTTCAAGTCTGAACGAGTctgaaaaaatttcttcct
cACAGTTCACATCTTTTTGACGGTGGTATCAAAACCACAAAAAATTAGTT
TATTAATAAATTTCTTTTCCAAATACCACCTTGTTTGTATA Run BLAST on NCBI transcript from alignment at sc0000051:638248..643634+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005147 ID=TCONS_00005147|Name=TCONS_00005147|organism=Clytia hemisphaerica|type=transcript|length=5387bp|location=Sequence derived from alignment at sc0000051:638248..643634+ (Clytia hemisphaerica)
ttttgaaaatgtgGCGCAAACAGAATAACGGTAAGCATTCATTTTAGACC
CAATAATCTTGAATATCCAAATACGAGGAAagggaaaaaaaacttttgtc
gcTAGGATCATAACGCACAGCACGTTGTTATCTTTGAAAGTTCAAAagca
aaatattgattttctttggattaGCACTAACCAACCACAGAAAACCAAAA
CTATTTCTTAATCTAAAATTATGGTAAATTTGGATACTGTCAGACGAGGT
TAAAAAGAGTTTGAGAGAGATAGGAAGGAAGCGAAGGTCACCAAAAAGAG
GAGAGTAGAATAAAATCTGAAGAGGAGTTATCCAGGATGTGGCGACATGT
CAAACAAACTGCTTCACAAAAGAAATTGAGCTGCACTAGTTATGAAAAAT
CCATGATGAACCACCTCTTTGTAAGGTAAGCATTGGTGAACCCCCCCACC
AGTGGTAAGTCTGATCACGATGCCAGcaatttttttgtcttcaatcacga
tcacgtaaatcagcaagaaattcaaaaaattaggcatcacggctcaaaaa
tcttttgaatcACGATCACGctttgacctctgatcacgcagtcacaaaga
aaaaatttccgaatcacgtaatcacgcaagaaaaaggtcgctatcacgcc
atcacgaaaaccgcttcgTGGGGAACATTGGTAAACCCAATAAATGCTTG
GTTTAACTTAAATGTTCAGAGTATTACCCTTATGAAGCTGTGAAAACCTT
TTAGGCTGCTGACATCCACTAACGAATTCGTGCTCCTATAATACCTGCAG
TTTTGTAAAGGTCTGCGATTCTGACTTAGGGTCACTAGAGGTGTAGTCAA
GGGAAAACCCTTAGTTGACccttaagattttttaaatgcaaattTGATCA
GTTGAAGGAGCTACAGTATCCGTCAATGGTGATGGATGACGTTTTAGATT
TTAATAACATAGGGGAGGGGGTTTCAGGGGTTTAAATTCTACCGTTTACA
GGTCAACACCGATTCTCATATAAAAGTTTGAGTGTCATTCCCAGTGAGCG
AGCTCAAGTTTTTTCGGCACCATATGCTGCCGCTCAAAAATGGAGTGTcc
gcatttttttttctaaaagagtTGAATCATTGATATGGGGTGTAAATGGT
GAAATTGTATTGAGTAGAAGGTGGTACTGTTTAACATCACAACAGAAGAG
CATTTATGTGgtatttttcatgaatttataTATGTACGACTTTTTCATAA
TAAATGATGGATGCTTTGTATCATAATGATAAATCTCTTTTCGCTCACCC
TGTGCCAGCAGTTGAGATATATTTAAAATGTTGGATGATGAGCTGAGAAA
TCAGTTTTAAATGGTCGTTGAGTTGTTGAGTTATGTAAACTCTTGTCAAG
TGGAGGTCATATTTCAACAGCTTTACAAACATTTGagcaaattctttaaa
aaaaagttgatgttGATTTTGTAGTAAGGTGAAAGGGAAAGTTGGcctaa
agaaatttttgttgttgcGTGAATTTGTTTGAAgtgaatttgttgaaaaa
tgaagattttgtcGAAGCATAAGAAGAAGAATGATGTGAAAACGAAGGAT
GGATTTGTCCAAGACTCTATTGGGATGTAAGTTGTCAATCAATGAAacga
ttatgacgtcactcatccTTTTGGCTTCCGTAATTTTTAATGACGTTTCT
TGTCATTAAGAAATTTAACGAAGAAAAATTCGTCCTCTaaacaatttatt
tttgaaaattgtttttttgaagataGCATTGTCATTCTTGCTTTAGCAGC
GATGGTTTATGTCTTTCAAGAAAATTTAGTTCGAGAGGGAAAATAACCGT
AATTTTTTCTTGGTTCAAAATTTCgtcagaaaataaaagaaagaccaTTG
AATATTAGTttatatttaaaggttttattgttattatttacATTTTGTGA
CGTTGAGTTGATGATAATTAGGACCAGACATTTGTTACTAGGTCAAGAGC
TTAGTTTTAAGGGCTTAGAGCACGAAATTAGATTATAATTAATGTTTTTG
TCTTGAGAAAGACGTGAATAAGCCCGTATAAGGAATTTTTGTTTATCGAA
GGATCTAAGATAAACAGACGAGCATAGCGTTCTATTTGGGTTTTATTGAT
CTGATTTGATGATAAGACGTGATAAGTTCGTTCGCTATGTAGAAGTATCG
CTAAGGAAGAGGTTTCGAAGTGTTGTCAAGAAGCAAAAACAAGGAAAACT
TTCTATGATCTGTGATTCTGAAACGTTCTAAAATCAAGTGGTTTATGTCG
AGATTTCAAAATGGATATTAGCAGGCCGACGTCAAAATATTTCGATTTCG
ATCACTTTATAGGGTATGTAAGAAAAAGCATGGTTGTTGACTATGTAAAA
GAGAAAGTATTTTTAATTAACTTTCGATCAAACAATCTACCGGAATCTGC
TTATATTTCAATGAAATGTGATTTGTCTTGTGAGTTCAAGTTGATATCTT
GTAGTAGAGATCAGATAGTTGTGGCTGTTTAGTTTGGAGTGAGAGTGAGG
CAATCGATACTACTGttttggagaattttttcaGGGAACTATGCAAATAA
AGGAAGATAATGAGGCTGAAAGTCCAAATCAAACCTTTCAGATTATATTC
AGTTAACACGTTAATGTGAAAAACAGTACTTTTCGAATATCAAAATACAT
TGTAAACTTTAAACCAGTTCTTAAAAGTTAATTTGAACACACTTGTTGAA
GGAgggtttttcagaaaattatccAACCTGaatttttgttgaaagtttGT
GATAGATAGCCATGAGGAAGTAAGTGATTACTGTGTGTTCGACTTTGGAT
CGTAAGAAAGTGTTTGATGGGAAAATAGAAAGATTATTGACTTTCACAGC
AAAGAGATACTTGAAAAAATAGCGGAAAATGCCTTTCAGTCAAATTTGTA
CACcgacttttttctattgtttatatgTGACCTTAAAACGTCAAAGTAAA
CCTCAAACTGAGAAGGTTGGGATCTAGCTAAAGGGAAATGCATATAATCT
GGACAAAAGCAAAAGGATCAGTATAAATTCAGGTCTTATTGAAATTATGT
TGTGTCTTCTGAAATGAGCTTGGTACTGAACAAAATGTATTTATTTCTTG
ATAGGATGACTGGCAAAACCCTTGGTATCACCGAATCTNGTTTGGTACTG
AACAAAATGTATTTGTTTCTTGATAGGATGACTGGCAAAACACTTGGTAT
CACCGAATCCGCAAGTCTCTTCAACATGAAGGAGTTTTATAAGTGGGAAT
TCAACGATGACGAAGAATCAGACGACCGCCACATCATTCATAAATGGTCG
CGCGACCGCATCAAGAAAATGCACGGATTACGAAAATCGTACATGAGCTT
TTTGGTGTATTCATTCCATTTAACAACATTGAAAAGTTTCATtgagaatt
tcaatttcatggtGATCCTTCAGATGATCTTAGCTGCTGGTGCCGTTTGG
TTGTTCGATTATTTTGACATTTATTTCAATTTCCATATCGGACTGTTTGT
TTCACCCATCGTATTTCCTCTGGCTTTCTCAATAAACACTGACTTTCAAC
GGAGAGAAAAGGTATTGGACGATTTAGCTAACTTTAAATCTTCATCCATG
GTTTTCTTCTTTTGTATGAGGGAATGGAGAAGTGCTTCAGGTTTGGAGGA
AGCTTGGTTAAAAGACATCAAACAAAAGGTCCATAGTATGATGTTCAACT
TGAGAGAATATTTATTGACAGATAAAATGAAAAGACGTGACATTATAGCA
CGCATAATGTATGAGGACTTCAGTGATATTTCACAATTGATCGAGAAAGT
TCGCGCCAGCAAATTACCCGCCAATCCTGCCATTGTATCAAGGTCCGTAC
ATTTATTGAACATGTTATGTCTGTCATTCGAACGTTTACGAGTCATTCGA
GAATATCGATCTCCAAGATCCATTCGATCTTTCAACAAAGTGTTAATTTT
ACTTTTACCCATAATCCTTTGCCCATATTTCGTTTATTTGGGACGATTGG
GTAAGAAGGAGATTAGCATCGGAAACTGGGGGCCTTACTACATCGCAGTG
CTCGTTGCAACAGTATTCGGTGCACTACAAGGAGTCCAAGACAAATTGGA
CGACCCTTTTGATGGAATGTCAGAGGACGATATAAACTTGGACACAATTG
ATGAATGGACTTTCAACTCCTTGAAGTCAGCTGCCGAGAGAAGCATTTAT
ACTATTGGTAGATTTCAAGTGAAGAAAGAACAGACCGAGAAACCACGATC
GAAGAGTATTGTTCAAATGTTACACGAGTTAGAAGCTGAAGAATGCCCGG
AGTCTGACTATGAAGCTCCAATTCTGAAAGCGTCGAAAAGCCCGTTTAAT
AATCGGAAAACAGGGAAAAGCcttttcagaaaaagttttaatcaaaaatc
aaagagaCGCGCGGTCGTTCGAAGTCAGACGTTTACCGGCTCTGATAAAT
GGAAGGAAGGACGTAAAAGGTTCAGTTCGACAACTTCACAAGCGTGGGCC
CCTGAAAATCACCCGTATGCAGAAGTTCTTGAGAAGATGTCAGGTGACAG
TCGTATTGAACGTAAACACACAGTACGTCACCACCCGATCGCAGCACGGC
AACAAAGTCATGAGCCGCATCCCACACCGAAAGATACGGACCTTCAACGG
AAAAGCGTCTCCGAAGCTTCTTTAAACACGATTCTCAAAAACGAAAATGA
CCAAGACTCAGATACAGGTGAACATCGAAAGAGTTTGGGTGTAAAGTTTC
AAAACGAGACTGAGTTATTCACTTATGACGAACGAAATAGTTTGAACAGT
GGTTCCAACAGTCGGCTACCTCTtctaaatgaagaaaaagagaaagaaga
acAGGACAATCGCTTCAAAACGACGAAACTCGAAATGTCACCTTTGAAAA
ACGGGGCACGATTTCATAAGAGTGTAGTACCCTCTATGAGCGTGAATAGC
GCTGATGATGAACTAACGCAAGTCATTGTGGATTCCAGCCCTCCAACTAA
AGAAGACAATGTCTTCGCttagatatttttttgaatttcttagtTGACCT
AAGTCCTTTATTTGGAATGTTTTTGAGcggtaattttgaattttgagaaG
GTATGCTCCTTGTGAGAATTTTCACTTGTTTCTTGTTGTACTTCACTTGC
AAGCAAAGGATTTTGGATTTCTTAACCCGACAAACCGTAGTAACCTACTT
ATTCAAAACCTTTCAAGTCTGAACGAGTctgaaaaaatttcttcctcACA
GTTCACATCTTTTTGACGGTGGTATCAAAACCACAAAAAATTAGTTTATT
AATAAATTTCTTTTCCAAATACCACCTTGTTTGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005147-exon-sc0000051-1491911889:638248..638277 | TCONS_00005147-exon-sc0000051-1491911889:638248..638277 | Clytia hemisphaerica | exon |
| TCONS_00005147-exon-sc0000051-1510915933:638248..638277 | TCONS_00005147-exon-sc0000051-1510915933:638248..638277 | Clytia hemisphaerica | exon |
| TCONS_00005147-exon-sc0000051-1575043694:638248..638277 | TCONS_00005147-exon-sc0000051-1575043694:638248..638277 | Clytia hemisphaerica | exon |
| TCONS_00005147-exon-sc0000051-1491911889:641474..643634 | TCONS_00005147-exon-sc0000051-1491911889:641474..643634 | Clytia hemisphaerica | exon |
| TCONS_00005147-exon-sc0000051-1510915933:641474..643634 | TCONS_00005147-exon-sc0000051-1510915933:641474..643634 | Clytia hemisphaerica | exon |
| TCONS_00005147-exon-sc0000051-1575043694:641474..643634 | TCONS_00005147-exon-sc0000051-1575043694:641474..643634 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:638248..643634 + |
Blast
The following BLAST results are available for this feature:
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