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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005142 ID=TCONS_00005142|Name=TCONS_00005142|organism=Clytia hemisphaerica|type=transcript|length=3743bpRun BLAST on NCBI protein sequence of TCONS_00005142-protein >TCONS_00005142-protein ID=TCONS_00005142-protein|Name=TCONS_00005142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=781bp MDEIKVEVRNQQNGSFMPAEIKNIHSEEATIAFEHSPDKWIRVPLTDVRKRun BLAST on NCBI transcript from alignment at sc0000051:569765..591852+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005142 ID=TCONS_00005142|Name=TCONS_00005142|organism=Clytia hemisphaerica|type=transcript|length=22088bp|location=Sequence derived from alignment at sc0000051:569765..591852+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:569765..591852+ >TCONS_00005142 ID=TCONS_00005142|Name=TCONS_00005142|organism=Clytia hemisphaerica|type=CDS|length=21114bp|location=Sequence derived from alignment at sc0000051:569765..591852+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005142 vs. Swiss-Prot (Human)
Match: FXR1 (Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=1 SV=3) HSP 1 Score: 318.931 bits (816), Expect = 1.686e-94 Identity = 169/383 (44.13%), Postives = 255/383 (66.58%), Query Frame = 2
Query: 608 MDEIKVEVRNQQNGSFMPAEIKNIHSEEATIAFEHSPDKWIRVPLTDVRKPSGNPLKEAYQYYEGEEVEIFSQEDTGEPMGWWLGKIFQRRGGFFVVQFKGLDEAYKEIRPLEQIRPIGYCYPVTRSMYFKCMIDVPQDLKEICGT-DVHQAFCDQTKASSVFYHADLNVLVVLSLREESIKKAAILSEMHFRSLRTKLLLISRNEEAEKQLGSAKKQSLQSPVYEQLTLPEDLVGLXXXXXXXXXXXXXXIPGILSVEVDEALCTFNILGENRECVAEAKKLLDFGEKQVHVPRVYVGKVIGKNGRIVQDIVDKSGVVRVKIDPEPEQNKSEEEKQKDVPFLFIGTQENISNAQMMLEYHLAHLKDVERLRDQKENIDSELR 1753
M E+ VEVR NG+F IK++H + T+ FE++ +VP +VR P +K+ + EG+EVE++S+ + EP GWWL K+ +G F+V+++ D Y EI E++RP+ V ++ +FKC +DVP+DL+E C + H+ F A +FYH + L++LS E ++K+ ILS+MH RS+RTKL+L+SRNEEA K L K+ L + +E+ + EDL+GLAIG G+NIQ AR++PG+ ++E+DE TF I GE+ + V +A+ L+F E + VPR VGKVIGKNG+++Q+IVDKSGVVRV+I+ + E E+ VPF+F+GT+E+I N Q++LEYH+A+LK+VE+LR ++ ID +LR
Sbjct: 1 MAELTVEVRGS-NGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKK--EISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQ--LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENKLPREDGM--VPFVFVGTKESIGNVQVLLEYHIAYLKEVEQLRMERLQIDEQLR 376 The following BLAST results are available for this feature:
BLAST of TCONS_00005142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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