TCONS_00005142-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005142-protein
Unique NameTCONS_00005142-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005142-protein ID=TCONS_00005142-protein|Name=TCONS_00005142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=781bp
MDEIKVEVRNQQNGSFMPAEIKNIHSEEATIAFEHSPDKWIRVPLTDVRK
PSGNPLKEAYQYYEGEEVEIFSQEDTGEPMGWWLGKIFQRRGGFFVVQFK
GLDEAYKEIRPLEQIRPIGYCYPVTRSMYFKCMIDVPQDLKEICGTDVHQ
AFCDQTKASSVFYHADLNVLVVLSLREESIKKAAILSEMHFRSLRTKLLL
ISRNEEAEKQLGSAKKQSLQSPVYEQLTLPEDLVGLAIGAQGANIQAARR
IPGILSVEVDEALCTFNILGENRECVAEAKKLLDFGEKQVHVPRVYVGKV
IGKNGRIVQDIVDKSGVVRVKIDPEPEQNKSEEEKQKDVPFLFIGTQENI
SNAQMMLEYHLAHLKDVERLRDQKENIDSELRTYGVNPPTGPFFPPPAEM
RRQHALSLCSQSDMVRDRTQTIDSYAGDLAELPVYTSNTSNKSNSSWNIR
VRTHSETEVLKKEEKGRSSPHGKSENIPQTIPEADAEYTQDLSHDNSSNT
TNTHHTTTSNRGKGSRRGSFHGNKSQSTNNGHGRTRVNSESERMTANEDL
NWRNHRPEEEDQVTAEHFQQQQRRRTKSEGEPLVEPKVLIKKRAATNATA
SQSNTKNTNSKNGHKNDHQKANQKHAPGKATQQHNNNAASQKQQKHHGNH
HHNNQQQQQLRTGQPREHRKILRNNNNASNTANNPNKQHVQQTKHQKQNE
MPLTNGVEETSNNTTDEKPPVKEEGCGDCKSNPSVLKDDNKNEISVEEKI
CVEGQTKTDNVTVLKSSQDTPAMPVEVAQES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002933XLOC_002933Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005142TCONS_00005142Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR008395Agenet-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 221..288
e-value: 0.25
score: 20.4
coord: 289..362
e-value: 3.5E-4
score: 29.9
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 289..358
e-value: 1.2E-9
score: 37.7
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 287..365
e-value: 3.0E-16
score: 58.3
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 220..283
e-value: 2.3E-6
score: 26.9
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 218..284
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 289..365
NoneNo IPR availableGENE3D2.30.30.140coord: 53..129
e-value: 5.4E-11
score: 42.0
NoneNo IPR availableGENE3D2.30.30.140coord: 4..52
e-value: 8.2E-5
score: 21.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 457..743
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 285..357
score: 13.481
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 222..283
score: 11.888
NoneNo IPR availableCDDcd00105KH-Icoord: 289..358
e-value: 2.02664E-8
score: 51.0215
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 58..124
IPR008395Agenet-like domainPFAMPF05641Agenetcoord: 65..118
e-value: 3.8E-5
score: 24.0
IPR008395Agenet-like domainPROSITEPS51641AGENET_LIKEcoord: 2..51
score: 10.17
IPR008395Agenet-like domainPROSITEPS51641AGENET_LIKEcoord: 66..118
score: 12.709

Blast
[Close]
BLAST of TCONS_00005142-protein vs. Swiss-Prot (Human)
Match: FXR1 (Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=1 SV=3)

HSP 1 Score: 347.436 bits (890), Expect = 1.318e-109
Identity = 169/383 (44.13%), Postives = 255/383 (66.58%), Query Frame = 0 
Query:    1 MDEIKVEVRNQQNGSFMPAEIKNIHSEEATIAFEHSPDKWIRVPLTDVRKPSGNPLKEAYQYYEGEEVEIFSQEDTGEPMGWWLGKIFQRRGGFFVVQFKGLDEAYKEIRPLEQIRPIGYCYPVTRSMYFKCMIDVPQDLKEICGTD-VHQAFCDQTKASSVFYHADLNVLVVLSLREESIKKAAILSEMHFRSLRTKLLLISRNEEAEKQLGSAKKQSLQSPVYEQLTLPEDLVGLAIGAQGANIQAARRIPGILSVEVDEALCTFNILGENRECVAEAKKLLDFGEKQVHVPRVYVGKVIGKNGRIVQDIVDKSGVVRVKIDPEPEQNKSEEEKQKDVPFLFIGTQENISNAQMMLEYHLAHLKDVERLRDQKENIDSELR 382
            M E+ VEVR   NG+F    IK++H +  T+ FE++     +VP  +VR P    +K+  +  EG+EVE++S+ +  EP GWWL K+   +G F+V+++   D  Y EI   E++RP+     V ++ +FKC +DVP+DL+E C  +  H+ F     A  +FYH +   L++LS  E ++K+  ILS+MH RS+RTKL+L+SRNEEA K L   K+  L +  +E+  + EDL+GLAIG  G+NIQ AR++PG+ ++E+DE   TF I GE+ + V +A+  L+F E  + VPR  VGKVIGKNG+++Q+IVDKSGVVRV+I+ + E     E+    VPF+F+GT+E+I N Q++LEYH+A+LK+VE+LR ++  ID +LR
Sbjct:    1 MAELTVEVRGS-NGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKK--EISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQ--LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENKLPREDGM--VPFVFVGTKESIGNVQVLLEYHIAYLKEVEQLRMERLQIDEQLR 376
The following BLAST results are available for this feature:
BLAST of TCONS_00005142-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXR11.318e-10944.13Fragile X mental retardation syndrome-related prot... [more]
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