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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005141 ID=TCONS_00005141|Name=TCONS_00005141|organism=Clytia hemisphaerica|type=transcript|length=1178bp
aataaaacgaGATGTCATCACAGCAGAAAGATGAGCAAGTCTTGGAACAA
ACAGAACAGATCTGGCGATTCTTGGACGAAATGTCATTGAAGGATCCAAA
AGAATACGAAACATTTATTCAGAAGGTGTTAAAAGATGGAGAGAATGAAA
ATATGGGACCCCCTATCCCTTCATTTGTAGTCCAAACAGAAAAGGTTCCT
CAAGTGATTCCAATACGAAAATATTTCATTAATTTCACTAAATGGCATCA
GCTTCCAAAACCTGAAAACGAGACTAGTCCTGTTGCCATGACAActtcaa
acattcgaaaagagATCATCGACAAAGAATGGGCTTACATCATCGACGTC
ACTCTGAACCCTGAGGTTTATCCAAGTGATACTTCGCCCAACCAACTACA
AAGATGTGCGCTTGTCGAACTCGTTTTTCGACACATCGAGTCAAAACACT
CTTTGCAATTTTCACGAAAGTTTGAATTTTGTGAAGAAAAATACATTGGA
AATAGAGACAGCTTGCTCGACTTTATTTGTCCTAGTGCtgtcaaaaataa
attgaacAATGCTCTGAATGGTACTGAAAATAACCTGACGTTAGATCAAA
TCCGTAACCTATCCAAAGGAAAAGAGAACAATAAAATAGTGACAGGTAAC
CAAACGAAGTCAGGAATGTCAAAGAAGTCACAACCAACTCCGGCATCTGT
TGAAACCATCAAAACATCGTCTGGTGAGTCTGTAGATTCTATGAAAGAAT
TGAAAACGAAGACGTTAGGAAGTCACCATGGCAACAAGACAAGATTGCCG
GCACCGAAGGTTGAGATGATGGTGAATAAAGATGGTGGAAATATCGAATT
GAGGATTGAGTTGCCGAAGGTTGACTCTGTTGCTGAATGTGATCTGGAAA
TTACTGAGaattgtGTGATGTTAGAAGTGCCACAGAAATACAAACTGGAT
TTCACCTTCCCACTAAAAGTAGACTTTGATGAAGCCAATGCGAAATTTAT
CAAGGACCGAAAAGTCTTGCTGATTATTGCACCGATCGACAAATGAGCGA
GCTTTCAAACGATAAATTGATATGGagaaacaaagtcaaaatggaGTTGC
TGCTACCGGAAATTATTCTCGAGAATGATATTTTAGAAGCAGAGAGACTT
AAATATAAGACTTTACATCAAAATAGTT Run BLAST on NCBI protein sequence of TCONS_00005141-protein >TCONS_00005141-protein ID=TCONS_00005141-protein|Name=TCONS_00005141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MSSQQKDEQVLEQTEQIWRFLDEMSLKDPKEYETFIQKVLKDGENENMGP
PIPSFVVQTEKVPQVIPIRKYFINFTKWHQLPKPENETSPVAMTTSNIRK
EIIDKEWAYIIDVTLNPEVYPSDTSPNQLQRCALVELVFRHIESKHSLQF
SRKFEFCEEKYIGNRDSLLDFICPSAVKNKLNNALNGTENNLTLDQIRNL
SKGKENNKIVTGNQTKSGMSKKSQPTPASVETIKTSSGESVDSMKELKTK
TLGSHHGNKTRLPAPKVEMMVNKDGGNIELRIELPKVDSVAECDLEITEN
CVMLEVPQKYKLDFTFPLKVDFDEANAKFIKDRKVLLIIAPIDK Run BLAST on NCBI transcript from alignment at sc0000051:557081..559364+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005141 ID=TCONS_00005141|Name=TCONS_00005141|organism=Clytia hemisphaerica|type=transcript|length=2284bp|location=Sequence derived from alignment at sc0000051:557081..559364+ (Clytia hemisphaerica)
aataaaacgaGATGTCATCACAGCAGAAAGATGAGCAAGTCTTGGAACAA
ACAGAACAGATCTGGCGATTCTTGGACGAAATGTCATTGAAGGATCCAAA
AGAATACGAAACATTTATTCAGAAGGTGTTAAAAGATGGAGAGAATGAAA
ATATGGGACCCCCTATCCCTTCATTTGTAGTCCAAACAGAAAAGGTTCGT
CTCAGGATTATCTTATCCTTTATTGCGAGCTTCCAATAATCATATCATTT
TGAGTATAGTTGAAATCTAATCGTCTTAGTGTACAGTTGACCTCGCTCAT
TCGAACTCAAACTTGTTCGAATAAcaaagagattcgaattatagagggtA
TTTTCAAGAGGGTTTCTCACTGACGGAAACTGACAATAAGTTCGAATCat
ggaaagatttgaataatagaagttcgaataagcctGAGTCAACTGTACTT
CACGGAAGAGGTCTCAGCAAAAGGTAGCTCTGATATTCGCACTGTTCATA
TATCTGTCAAATATTGACCAGGGATACACCTATCAACTCTCAAAGCTGAT
GGGGACTGGGTTTGAGTTTACAGGGGAAGAGCGACGTCTTCAAAATGTCT
GAAgtcaatgtttttatttcataGACACGTCATTTtggcttcattttttc
ttggTAGACTGGACCCGATCCCTTTGAAGCATTTAGGATTGATAGATATG
TTTTGATGTTTAATTCTTCTTTCACATTCGCAGGTTCCTCAAGTGATTCC
AATACGAAAATATTTCATTAATTTCACTAAATGGCATCAGCTTCCAAAAC
CTGAAAACGAGACTAGTCCTGTTGCCATGACAActtcaaacattcgaaaa
gagATCATCGACAAAGAATGGGCTTACATCATCGACGTCACTCTGAACCC
TGAGGTTTATCCAAGTGATACTTCGCCCAACCAACTACAAAGATGTGCGC
TTGTCGAACTCGTTTTTCGACACATCGAGTCAAAACACTCTTTGCAATTT
TCACGAAAGTTTGAATTTTGTGAAGAAAATTACATTGGAAATAGAGACAG
CTTGCTCGACTTTATTTGTCCGAGTGCtgtcaaaaataaattgaacAATG
CTCTGAATGGTACTGAAAATAACCTGACGTTAGATCAAATCCGTAACCTA
TCCAAAGGaaaagagaacaataacataGTGACAGGTAACCAAACGAAGAC
GGGGATGTCGAGGAAGTCACAAACAACTCCGGCATCTGTTGAAACCATNG
AACTCGTTTTTCGACACATCGAGTCAAAACACTCTTTGCAATTTTCACGA
AAGTTTGAATTTTGTGAAGAAAAATACATTGGAAATAGAGACAGCTTGCT
CGACTTTATTTGTCCTAGTGCtgtcaaaaataaattgaacAATGCTCTGA
ATGGTACTGAAAATAACCTGACGTTAGATCAAATCCGTAACCTATCCAAA
GGAAAAGAGAACAATAAAATAGTGACAGGTAACCAAACGAAGTCAGGAAT
GTCAAAGAAGTCACAACCAACTCCGGCATCTGTTGAAACCATCAAAACAT
CGTCTGGTGAGTCTGTAGATTCTATGAAAGAATTGAAAACGAAGACGTTA
GGAAGTCACCATGGCAACAAGACAAGATTGCCGGCACCGAAGGTTGAGAT
GATGGTGAATAAAGATGGTGGAAATATCGAATTGAGGATTGAGTTGCCGA
AGGTTGACTCTGTTGCTGAATGTGATCTGGAAATTACTGAGGTGAGCTTT
ACTTTCATGGAAACTAAAACTGTTATTTGGATTTATTCATTGTAGGAGTT
CTGAGGACCTTTGAAAAATCTAGTGATCTTAGTGCGGGAATGGGAATCTT
ACGCAAAACGATTTGGATTTGGGCGACCATTCTATCATTGGTCAGACTGT
TTCAAGTTTCATATTCTAATCTTTCGACCATTATCATTTATTTCAACTGC
TTCGGTGAAATCCAGCTCCTTTCACGGCTGTTTGGTGgcaacatttattt
ttcttttttttcagaattgtGTGATGTTAGAAGTGCCACAGAAATACAAA
CTGGATTTCACCTTCCCACTAAAAGTAGACTTTGATGAAGCCAATGCGAA
ATTTATCAAGGACCGAAAAGTCTTGCTGATTATTGCACCGATCGACAAAT
GAGCGAGCTTTCAAACGATAAATTGATATGGagaaacaaagtcaaaatgg
aGTTGCTGCTACCGGAAATTATTCTCGAGAATGATATTTTAGAAGCAGAG
AGACTTAAATATAAGACTTTACATCAAAATAGTT Coding sequence (CDS) from alignment at sc0000051:557081..559364+ >TCONS_00005141 ID=TCONS_00005141|Name=TCONS_00005141|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at sc0000051:557081..559364+ (Clytia hemisphaerica)
ATGTCATCACAGCAGAAAGATGAGCAAGTCTTGGAACAAACAGAACAGAT
CTGGCGATTCTTGGACGAAATGTCATTGAAGGATCCAAAAGAATACGAAA
CATTTATTCAGAAGGTGTTAAAAGATGGAGAGAATGAAAATATGGGACCC
CCTATCCCTTCATTTGTAGTCCAAACAGAAAAGGTTCCTCAAGTGATTCC
AATACGAAAATATTTCATTAATTTCACTAAATGGCATCAGCTTCCAAAAC
CTGAAAACGAGACTAGTCCTGTTGCCATGACAActtcaaacattcgaaaa
gagATCATCGACAAAGAATGGGCTTACATCATCGACGTCACTCTGAACCC
TGAGGTTTATCCAAGTGATACTTCGCCCAACCAACTACAAAGATGTGCGC
TTGTCGAACTCGTTTTTCGACACATCGAGTCAAAACACTCTTTGCAATTT
TCACGAAAGTTTGAATTTTGTGAAGAAAAATACATTGGAAATAGAGACAG
CTTGCTCGACTTTATTTGTCCTAGTGCtgtcaaaaataaattgaacAATG
CTCTGAATGGTACTGAAAATAACCTGACGTTAGATCAAATCCGTAACCTA
TCCAAAGGAAAAGAGAACAATAAAATAGTGACAGGTAACCAAACGAAGTC
AGGAATGTCAAAGAAGTCACAACCAACTCCGGCATCTGTTGAAACCATCA
AAACATCGTCTGGTGAGTCTGTAGATTCTATGAAAGAATTGAAAACGAAG
ACGTTAGGAAGTCACCATGGCAACAAGACAAGATTGCCGGCACCGAAGGT
TGAGATGATGGTGAATAAAGATGGTGGAAATATCGAATTGAGGATTGAGT
TGCCGAAGGTTGACTCTGTTGCTGAATGTGATCTGGAAATTACTGAGaat
tgtGTGATGTTAGAAGTGCCACAGAAATACAAACTGGATTTCACCTTCCC
ACTAAAAGTAGACTTTGATGAAGCCAATGCGAAATTTATCAAGGACCGAA
AAGTCTTGCTGATTATTGCACCGATCGACAAATGAATGTCATCACAGCAG
AAAGATGAGCAAGTCTTGGAACAAACAGAACAGATCTGGCGATTCTTGGA
CGAAATGTCATTGAAGGATCCAAAAGAATACGAAACATTTATTCAGAAGG
TGTTAAAAGATGGAGAGAATGAAAATATGGGACCCCCTATCCCTTCATTT
GTAGTCCAAACAGAAAAGGTTCCTCAAGTGATTCCAATACGAAAATATTT
CATTAATTTCACTAAATGGCATCAGCTTCCAAAACCTGAAAACGAGACTA
GTCCTGTTGCCATGACAActtcaaacattcgaaaagagATCATCGACAAA
GAATGGGCTTACATCATCGACGTCACTCTGAACCCTGAGGTTTATCCAAG
TGATACTTCGCCCAACCAACTACAAAGATGTGCGCTTGTCGAACTCGTTT
TTCGACACATCGAGTCAAAACACTCTTTGCAATTTTCACGAAAGTTTGAA
TTTTGTGAAGAAAAATACATTGGAAATAGAGACAGCTTGCTCGACTTTAT
TTGTCCTAGTGCtgtcaaaaataaattgaacAATGCTCTGAATGGTACTG
AAAATAACCTGACGTTAGATCAAATCCGTAACCTATCCAAAGGAAAAGAG
AACAATAAAATAGTGACAGGTAACCAAACGAAGTCAGGAATGTCAAAGAA
GTCACAACCAACTCCGGCATCTGTTGAAACCATCAAAACATCGTCTGGTG
AGTCTGTAGATTCTATGAAAGAATTGAAAACGAAGACGTTAGGAAGTCAC
CATGGCAACAAGACAAGATTGCCGGCACCGAAGGTTGAGATGATGGTGAA
TAAAGATGGTGGAAATATCGAATTGAGGATTGAGTTGCCGAAGGTTGACT
CTGTTGCTGAATGTGATCTGGAAATTACTGAGaattgtGTGATGTTAGAA
GTGCCACAGAAATACAAACTGGATTTCACCTTCCCACTAAAAGTAGACTT
TGATGAAGCCAATGCGAAATTTATCAAGGACCGAAAAGTCTTGCTGATTA
TTGCACCGATCGACAAATGAATGTCATCACAGCAGAAAGATGAGCAAGTC
TTGGAACAAACAGAACAGATCTGGCGATTCTTGGACGAAATGTCATTGAA
GGATCCAAAAGAATACGAAACATTTATTCAGAAGGTGTTAAAAGATGGAG
AGAATGAAAATATGGGACCCCCTATCCCTTCATTTGTAGTCCAAACAGAA
AAGGTTCCTCAAGTGATTCCAATACGAAAATATTTCATTAATTTCACTAA
ATGGCATCAGCTTCCAAAACCTGAAAACGAGACTAGTCCTGTTGCCATGA
CAActtcaaacattcgaaaagagATCATCGACAAAGAATGGGCTTACATC
ATCGACGTCACTCTGAACCCTGAGGTTTATCCAAGTGATACTTCGCCCAA
CCAACTACAAAGATGTGCGCTTGTCGAACTCGTTTTTCGACACATCGAGT
CAAAACACTCTTTGCAATTTTCACGAAAGTTTGAATTTTGTGAAGAAAAA
TACATTGGAAATAGAGACAGCTTGCTCGACTTTATTTGTCCTAGTGCtgt
caaaaataaattgaacAATGCTCTGAATGGTACTGAAAATAACCTGACGT
TAGATCAAATCCGTAACCTATCCAAAGGAAAAGAGAACAATAAAATAGTG
ACAGGTAACCAAACGAAGTCAGGAATGTCAAAGAAGTCACAACCAACTCC
GGCATCTGTTGAAACCATCAAAACATCGTCTGGTGAGTCTGTAGATTCTA
TGAAAGAATTGAAAACGAAGACGTTAGGAAGTCACCATGGCAACAAGACA
AGATTGCCGGCACCGAAGGTTGAGATGATGGTGAATAAAGATGGTGGAAA
TATCGAATTGAGGATTGAGTTGCCGAAGGTTGACTCTGTTGCTGAATGTG
ATCTGGAAATTACTGAGaattgtGTGATGTTAGAAGTGCCACAGAAATAC
AAACTGGATTTCACCTTCCCACTAAAAGTAGACTTTGATGAAGCCAATGC
GAAATTTATCAAGGACCGAAAAGTCTTGCTGATTATTGCACCGATCGACA
AATGAATGTCATCACAGCAGAAAGATGAGCAAGTCTTGGAACAAACAGAA
CAGATCTGGCGATTCTTGGACGAAATGTCATTGAAGGATCCAAAAGAATA
CGAAACATTTATTCAGAAGGTGTTAAAAGATGGAGAGAATGAAAATATGG
GACCCCCTATCCCTTCATTTGTAGTCCAAACAGAAAAGGTTCCTCAAGTG
ATTCCAATACGAAAATATTTCATTAATTTCACTAAATGGCATCAGCTTCC
AAAACCTGAAAACGAGACTAGTCCTGTTGCCATGACAActtcaaacattc
gaaaagagATCATCGACAAAGAATGGGCTTACATCATCGACGTCACTCTG
AACCCTGAGGTTTATCCAAGTGATACTTCGCCCAACCAACTACAAAGATG
TGCGCTTGTCGAACTCGTTTTTCGACACATCGAGTCAAAACACTCTTTGC
AATTTTCACGAAAGTTTGAATTTTGTGAAGAAAAATACATTGGAAATAGA
GACAGCTTGCTCGACTTTATTTGTCCTAGTGCtgtcaaaaataaattgaa
cAATGCTCTGAATGGTACTGAAAATAACCTGACGTTAGATCAAATCCGTA
ACCTATCCAAAGGAAAAGAGAACAATAAAATAGTGACAGGTAACCAAACG
AAGTCAGGAATGTCAAAGAAGTCACAACCAACTCCGGCATCTGTTGAAAC
CATCAAAACATCGTCTGGTGAGTCTGTAGATTCTATGAAAGAATTGAAAA
CGAAGACGTTAGGAAGTCACCATGGCAACAAGACAAGATTGCCGGCACCG
AAGGTTGAGATGATGGTGAATAAAGATGGTGGAAATATCGAATTGAGGAT
TGAGTTGCCGAAGGTTGACTCTGTTGCTGAATGTGATCTGGAAATTACTG
AGaattgtGTGATGTTAGAAGTGCCACAGAAATACAAACTGGATTTCACC
TTCCCACTAAAAGTAGACTTTGATGAAGCCAATGCGAAATTTATCAAGGA
CCGAAAAGTCTTGCTGATTATTGCACCGATCGACAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005141-exon-sc0000051-1491911889:557081..557274 | TCONS_00005141-exon-sc0000051-1491911889:557081..557274 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1510915933:557081..557274 | TCONS_00005141-exon-sc0000051-1510915933:557081..557274 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1575043694:557081..557274 | TCONS_00005141-exon-sc0000051-1575043694:557081..557274 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1491911889:557814..558053 | TCONS_00005141-exon-sc0000051-1491911889:557814..558053 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1510915933:557814..558053 | TCONS_00005141-exon-sc0000051-1510915933:557814..558053 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1575043694:557814..558053 | TCONS_00005141-exon-sc0000051-1575043694:557814..558053 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1491911889:558348..558821 | TCONS_00005141-exon-sc0000051-1491911889:558348..558821 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1510915933:558348..558821 | TCONS_00005141-exon-sc0000051-1510915933:558348..558821 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1575043694:558348..558821 | TCONS_00005141-exon-sc0000051-1575043694:558348..558821 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1491911889:559095..559364 | TCONS_00005141-exon-sc0000051-1491911889:559095..559364 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1510915933:559095..559364 | TCONS_00005141-exon-sc0000051-1510915933:559095..559364 | Clytia hemisphaerica | exon |
| TCONS_00005141-exon-sc0000051-1575043694:559095..559364 | TCONS_00005141-exon-sc0000051-1575043694:559095..559364 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:557081..559364 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00005141 vs. Swiss-Prot (Human)
Match: PIHD2 (PIH1 domain-containing protein 2 OS=Homo sapiens GN=PIH1D2 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.021e-31 Identity = 86/338 (25.44%), Postives = 158/338 (46.75%), Query Frame = 3
Query: 39 VLEQTEQIWRFLDEMSLKDPKEYETFIQKVLKDGENENMGPPIPSFVVQTEKVPQVIPIRK-YFINFTKWHQLPKPENETSPVAMTTSNIRKEIIDKEWAYIIDVTLNPEVYPSDTSPNQLQRCALVELVFRHIESKHSLQFSRKFEFCEEKYIGNRDSLLDFICPSAVKNKLNNALNGTENNLTLDQIRNLSKGKENNKIVTGNQTKSGMSKKSQPTPASVETIKTSSGESVDSMKELKTKTLGSHHGNKTRLPAPKVEMMVNKDGG----NIELRIELPKVDSVAECDLEITENCVMLEVPQKYKLDFTFPLKVDFDEANAKFIKDRKVLLIIAPI 1037
+L Q Q W LD+++ DP+ YE FIQ+ LK+G+ P P +QT + P K FIN +W ++P P++ T PV +T + +IDV NP+V + +Q+++ L+++ + IE K S + K ++ ++ + NL Q ++ ++ + +T Q +S P + SG++V ++E+ + + + + P E+ + D IEL++ELP ++SV+ CDL ++E+ +++EV +KY+L P +D + AKFIK++ L+I P+
Sbjct: 8 LLTQVTQFWNLLDDLAQSDPEGYEKFIQQQLKEGKQLCAAPE-PQLCLQTRILK---PKEKILFINLCQWTRIPAPQSTTHPVPLTVGKPEDTTEISDAYTVIDVAYNPDVLHA-AEKDQVKKNQLIQMAMKCIEEKFQFTLSHSYHI--------------------TKFRIKGSIQRMKQNLMGIQTDSIDLREKMRRELTLGQIRSSTMSNPDHFPQLLLPKDQVSGKAVCLIEEISSTEI------QVEMKMPAYELKIVHDHSEKPLKIELKVELPGINSVSLCDLSVSEDDLLIEVSEKYRLHLNLPKLIDTEMTTAKFIKEKSTLIITMPL 314
The following BLAST results are available for this feature:
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