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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005132 ID=TCONS_00005132|Name=TCONS_00005132|organism=Clytia hemisphaerica|type=transcript|length=1739bpRun BLAST on NCBI protein sequence of TCONS_00005132-protein >TCONS_00005132-protein ID=TCONS_00005132-protein|Name=TCONS_00005132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp MASTAVLRNLVRQSSKRVAKRNVPNQVFARTITQVDPKIPMKEFEKMKLPRun BLAST on NCBI transcript from alignment at sc0000051:306410..315912+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005132 ID=TCONS_00005132|Name=TCONS_00005132|organism=Clytia hemisphaerica|type=transcript|length=9503bp|location=Sequence derived from alignment at sc0000051:306410..315912+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:306410..315912+ >TCONS_00005132 ID=TCONS_00005132|Name=TCONS_00005132|organism=Clytia hemisphaerica|type=CDS|length=19656bp|location=Sequence derived from alignment at sc0000051:306410..315912+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005132 vs. Swiss-Prot (Human)
Match: NDUS2 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2) HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0 Identity = 321/418 (76.79%), Postives = 365/418 (87.32%), Query Frame = 3
Query: 366 EYTGHVMYPDEFTGQWDKEQF-----VAEKGVTNMTLNFGPQHPAAHGVLRLVLELNGEVVERADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQVYSLAVEKLLNVQIPERAKWIRVMFGEITRILNHIMGITTHALDVGAMTPFFWMFEEREKLMEFYERASGARMHAAYVRPGGVSQDLPLGLMDDIHDFMTKFGQRIDEVEEMLTHNRIWKQRLVDIGVVTQEQALSFGMSGVMLRGSGFKWDLRKVQPYDAYDQVDFDVPIGKNGDCYDRYLCRMEEMRQSMRIVFQCLNKMPPGEIKIDDAKVSPPKRSEMKESMEALIHHFKLYTEGYTVPPGETYTAIEAPKGEMGVYLVSDGSSKPYRCKIRAPGFYHLASMDYMSRGHMLADVVAIIGTQDIVFGEVDR 1604
++ G VMYP + T W + + V N+TLNFGPQHPAAHGVLRLV+EL+GE+V + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ YSLAVEKLLN++ P RA+WIRV+FGEITR+LNHIM +TTHALD+GAMTPFFW+FEEREK+ EFYER SGARMHAAY+RPGGV QDLPLGLMDDI+ F F R+DE+EE+LT+NRIW+ R +DIGVVT E+AL++G SGVMLRGSG +WDLRK QPYD YDQV+FDVP+G GDCYDRYLCR+EEMRQS+RI+ QCLNKMPPGEIK+DDAKVSPPKR+EMK SME+LIHHFKLYTEGY VPPG TYTAIEAPKGE GVYLVSDGSS+PYRCKI+APGF HLA +D MS+GHMLADVVAIIGTQDIVFGEVDR
Sbjct: 46 QFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463 The following BLAST results are available for this feature:
BLAST of TCONS_00005132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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