XLOC_002925 (gene) - C. hemisphaerica

Overview
NameXLOC_002925
Unique NameXLOC_002925
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000051:306410..315912+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002925 ID=XLOC_002925|Name=XLOC_002925|organism=Clytia hemisphaerica|type=gene|length=9503bp|location=Sequence derived from alignment at sc0000051:306410..315912+ (Clytia hemisphaerica)
AAAATattgaaccaaataaaaaaaatagtcTGGCgcctactttcgttttc
atttcCAAGAAATACAATTACATTGGTCACATCACCTAGGTTAAACTTTA
GTTTCTGAAAGGATTAATCAGTATTGGCCGTCTGACCACGAATTCTACTT
TTACTCGACTTATGTAACAAAGTCACCAAAAGCTTCAGTAAAGTTCAACC
AAGATGGCGTCGACAGCAGTGCTTCGAAATTTAGTTCGCCAATCATCAAA
ACGAGTAGCCAAGAGAAATGTTCCAAACCAAGTCTTTGCAAGgtatattc
aatttctatttgatAGTTAGAATATGTACCATCTTCAAGAactatttttt
ttgctttaggtAGACTCTAGGTGGACGAAGAGCTCTGGGTGACTGGACAT
GATGAAAATtcccctcatttttttttttttttgaaaaacagacttattca
ttttgaagaattatcTTAAATTAGCACAGTTTGCTTCAGTACAAGCTGTA
CATTTGTTGAATTACTGAACATTTTAGATGCTGTTCTCTGGCTGAAAAGT
TGCTCAACGACAACTTTTCAAACGCACAAtgcaatgggccattccagaat
ttgtctgtaacaggccagggaggaccctcccggcgcCGTTATTTTGTGCT
CTGGAGCACCGGAAGATTCAGGAGTACTTCCAGTGTTCCGGAGCACGATT
TTCGGTGATTGGCGGTATGCATCGGAACTCTCTGGAACGTTCTGGTCCGG
TGcacccagtttgcagagtatggcagAAATTGTCGAGATCTCGGGGGCAg
agatagaccttttcgcctttccatccgccatattgaattgtatgcaaaaa
ttatagTGGCTGAATTGCCgcggtgaaattcccttagaaagtatgcaaaa
catatgcaaaaagaaagtattattataaaacttacatgcataattgtcat
tatattaaagtgcaatcttgtagaagaaagattaaatttgcttcttttga
aaactagaaataatcaaatttgctcatctcttagaacaagcacttcaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgttgttctg
taaatatttctttttggattaagaaatcccatcttttattgttctaatga
ttataatatttctttataagatgctttgttgtctttttaatctttatgTA
AACTTGCATATATTGCAtactaaatccaaccacagctttttcgttcctct
tttttgcatacaattcaagatggcggatggaaaggcgaaaaggtctacag
ctagttttcaatgattttgatATTGCTCACTTTTCAAGGGCAGGGACaga
attttgataatatctACCTATCAGGggcaaaatcattgaaaactaGCTAA
NTATTGCTCACTTTTCAAGGGCAGAGACagaattttgataatatctACCT
ATCAGGggcaaaatcattgaaaactaGCTAATTTCACAAGTTTTTCTGGC
TTTTTTGTGGTGGAAATAGATCTCAGGGGGATACTTTTGATGTTGGAAAT
TTTCCTTGGGGGCAACCATCACATACTCTGAAAACTGGCAGTGCACTTCA
GCTAACTGCGCATGCgcgtatttaaaaaaaatcagccGACTCATGGTAGT
TTCAATATTTTGACCAGCCATGCTATGGAATATAGCtaatgtgacaaatt
caatttcatatcATCCTCAAAGTATTTTATTTGACCAAAGTGTCCATAAC
GtggggacaaatattttttgtaaccatGTTTAAACGGTTTTTTAGAAACt
gataaaaatcacttgctccgGAAGCACCAGAAGAGCTCCAGAACTTTCcg
gagagaaaaatagtgtttttttagctgctccGGAAAACTGCGCTGGGAGG
GTCCTGgccggacgacacaggatttccgagggcaaaagttttcaccaaaa
tccaaaatttccaaggcaagagaagaaaatgaatgaatttccatggcaat
tgaattaaaaaagacaaaaaagagtGGAAATTTCCGACGCATTTTGTGAA
TTCCATCAGAATTTccaaccaccactggaaaaaaaattatttccaaagct
agaaaaaaaaaaaaatgaacgtcgtccgacggggggtaacaaaaattttc
tggaatggcccaatgggaaaagattttcagggtggtaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNggggggggggggggggtaacaaaagttttctggaat
ggcccaatgggaaaagattttcagggtggtataatatcatgaatagattg
aacatactaaaatttacATACTTGTACAAGATCAACACCACAGATAGGTT
AAACAACAAACAGACAAAGCAAACAAGTTCAAAGAGAAAATTATCAAGAC
AAACGACAAGTAAAGTATCAATATGTTagtcaaaaaacacaaattttcaa
aaagttgacCCAGAACCACCAGGTTAGAAACCCAAAGGCCAAAGTGCAGT
GCAGATGGCTGTGTGGgaaagaacaaaaaagaaaactaaCACCAATACAT
GATAgaaaaaatgttgtaaaaagGCAGTTGCACTACAAAATGATTTAAAG
ATTCCCCAAATTTCATGaaagtctctggaaatctatCACAACATTTTACA
ATCATTTGTAAAACATTTCTCAACTCAGCTCAGCTCAGCTCAGCTCCCTT
ATTGAGCATGGATTTGAACAGTTCTGAAATTCTGGGCAGAACATCTTCAA
ATAGAAGAATTCACCTAACAATGCGTAGGACCTCAGAATATATAGAAATA
TATAGAAGAACTGTAAAAGATGAGGATGGTAAATTACTTATCTTTATGTA
CTAATATTATACTACTTATATATACTAATGGTGCCAGGTGGGGCTTTCAT
GTAAATCTTGGTACCATTTTCGATTCCCCCCTACTTATCCTAAAACAGTT
ATCCAATTAGAAAATAattgaggaaatgtgtgtagcattttagctgaaaa
aaagTGGGGAATGACCACTGCTGCAGATTTTACTGTATGTTTTTATTGAG
TGGAGCTACTTCTTTCAATTAAAAAGGGGCTAAACAAAGAATGAAAAGAC
cttcaatattaaaaaatagaatcataattttgaatgaaaataagaaagta
AAAAAGATGTGCTTCTCATCAAAACAATATTTggcacctaaaaattttca
catctTAATTAAGCATGATAACAtctctgacagtaaggtgttataaaaat
tgacaaattcctgttccaaatttattttttatgtcaagtATATTGTTCAA
ATTGTAACCGATTCTCTTTTGGCAGCACCAGCttacattttagaaaatat
ttcccTTGATGCCATTTCAATGTGGTGGCTGACAGCCTTGTgtgaaataa
taaaatcaatcaCATTTATATATTTCTAGGACCATCACTCAAGTTGATCC
TAAGATCCCCATGAAAGAATTTGAGAAGATGAAATTGCCTGACGAACTGG
CAGAGTATACAGGTCATGTAATGTATCCTGATGAGTTTACCGGACAGTGG
GACAAGGAACGTAAGTCATATTGTAGTTCATCCTCTTTTATGAACAGTAC
ATGTTTAGCATAATATTTGCAAGCATGTCGAGACCAAGACTTGTGATCAG
ATAAGATATAAGCATATTGGTGAACTTAGATCATTTATTTCctagtttga
aaaaaataaactggTATCAGCTatgtttttttgttataaatattATCAGA
TTGTATGTTATCAGGTGATATTTCTTCTCTTCCACCATCTGCTTCCATAG
TGCATTCTACCTATGAATCATGGCTTTAGAAGAGTCTGGATGTTGGATAC
CAACcttattaattttgttttcataGAGTTTGTTGCAGAAAAGGGAGTCA
CCAATATGACATTAAACTTTGGACCACAACATCCTGCAGCTCACGGTGTA
TTACGATTAGTTTTGGAGCTCAACGGAGAGGTTTGTACGTTTCTTTGCAG
ATGtttttgtaacgttgcaagtaTATAGAAGGCAAAAGGGTTTTTTTAGA
TGTAATTTCTTAAACTTAGATTTATGATCATtcttataatatttttaaag
aaatgttTTTGCTACTTTGCTAAAACTATATTTGTGCAGTAATCTTCTAA
GTTGaagatttttctctttttatttaCAGGTTGTTGAACGGGCAGATCCT
CACGTTGGTCTTCTCCATCGGGGAACAGAAAAACTGATTGAATATAAAAC
TTACCTACAGGTAATTCTCATAGTTTTATTGAGAGGTGGTTTAAGTATAT
CTCACATTATTTACCCCTTTTGCAGGCATTTATTTAGCCTCACCACAGTC
GGCCGTATAAAAAactctggtctggaagcttattgctTTAACTTTTcgtt
agctttttcctttgttaatatcaaaagataaaaatcgatttgctcagttt
ttgatcacgttacgaagtattcctcttgggattggttcaagatttaatca
catgatcaaaaaaggattaaaacaaactaatttctcaaacgCAAGTCTAT
GTAAGAAACAAtggggttttttatacggactatggccTCACAAGATATCT
GACTGAAAAAACCTCGCTGTACAAACAAAAGATAAGTTAAATGTTGacat
taatttaagttttaaaaaACTTCTTTATTTCGAATTATCAGGCCCTTCCC
TATTTCGATCGATTGGACTATGTATCAATGATGACAAACGAACAAGTTTA
TTCATTGGCtgttgaaaaattattaaatgtCCAAATTCCTGAACGTGCTA
AATGGATCAGAGGTCGGTATCATTATTATGATTGTCGTGGCTCACTTTTT
CACCCGTGGTTTATATTGACAACAGTTTAGTTGACAGTTTGGCAGCTAAC
ATTTACAGATTCGCCGATCAAATTCCTCGATACAAAGATTCTtcataaaa
gaatatttaacaGCTCAATTTGCTTTAATTTTCTGTCTGGTTCTCGAGTG
GTCACATCTGCTCCCTGTTCtcaattgatttttcttttccagtgatGTTT
GGAGAGATCACACGTATTTTGAACCACATCATGGGAATCACGACTCACGC
TTTGGATGTCGGTGCCATGACCCCTTTCTTCTGGATGTtcgaagaaagag
aaaaagtaaGTCTAAATTATGCCTCGAGATGATTCCATCATGCTCCAACG
ATAAGAaggaataaaaaaatgaaagcatTTATTTCGACTGGaatgtcatt
tttcaattaaaTGAATTCACTGTTTCTTGTTTTAGTTGATGGAATTTTAC
GAGCGTGCATCAGGCGCCCGAATGCACGCTGCATATGTTCGACCGGGTGG
TGTATCGCAggtaaagtttttgtttgttttgagtttttaacatagattta
taaagcgcGAAGGGCTAGATGGTGTACTttagctgaaaagtgtgccgtgg
ttaggtaggaaatcctacctaagtcgtgtgatattacaatagaatttctg
cgcttgaccaatcagaagcttcgcggggtTTTccaaaacaatagcagcaa
tattttttccgatattcactttctTTTGCTCGCAATgacttaaagcacga
catctagcccttcgggctttataaatctatggtttcGAATAATGACCTGT
TTGCTGGGAAGAGACTTAAAGTCTCGAATATATAAGCTTTGTAGTATATA
CCAACAACACTGAACCAGATGGTGTGTCGCATGTAAATGAAGGAGCCTTT
TGATATCGATAATTATTTTCAGGATTTACCGCTGGGTTTAATGGATGATA
TTCACGATTTCATGACGAAATTTGGACAACGTATTGATGAAGTCGAAGAG
GTATGGTTCTTCACCAATCAATTGTTTAAAGATTCCTATTGGGGTCTCAT
GGGAGTTGAAATATGACGCGAGAAGACCAAGATAATCTCTCAGATTCTTA
AGACAAATTCTTTATGTAAGACCTGTATTGCCTTAAGGAGTTGCCTCTCT
CAGCATGGacaaatcttctttttttttttttgctttctcggattcttttc
aagaaaagttttttttattttgctaatGATTTTGTGATTTAGATGTTGAC
ACATAACCGTATTTGGAAACAACGTCTGGTGGACATCGGAGTGGTCACAC
AAGAACAAGCCTTATCTTTCGGCATGTCGTAAGTTTGTCACACAAATCCT
CTGCGACTTTTGGTATCCGTAGTGAGGTCATTATAACACATTACCATGTT
GCAAAGAGAAACTTCACTGTATAGGTCTTAATATGACTTCCCCAAGGATA
TCGAAGATGTGTTTGGCATcaaattcattcaaattcaTTGCTCTAAATTT
TTAAGCCACTAAACCAAAAccattctttttttctaaaaaaggccTCACCT
CATATTTATTAACATTTCTGCAATGGCGAAATCTTGTGCGCATGATCATA
TTTGATAATCCTCAGCTTAAGTAGATTAGTTGAAATGAAAAAGTGAATAC
CATTTCAATGACTTTCTTTCAGAGGTGTCATGCTTCGAGGATCGGGCTTC
AAATGGGATTTAAGGAAAGTTCAACCCTATGATGCTTACGATCAAGTGGA
CTTTGATGTCCCCATCGGAAAGAATGGTGATTGCTACGACAGGTTATTTT
CCTTGAATAATCATTCTCTTGGGAATTGAGTGGGGTCAAATCGTGTGAAG
TATAATGATAACAGTCTCCCACCAGTTTTGTTTTTCGTATATTACGTCAG
CAGTTTGTGCCATTTGTAATTTTATCTAATCTCATGACAACACGCTTATT
TAGTCTGGGTCATTGCTAACCTATTCTCGACATTAATATTTTGGGTAGCT
TGTGGTTTGAAACAATGATATTTGCACGTTACGAGTATTTACCCGTATGG
TGTATTTGTTACGGGTATGAAGCGTTCACACTAacttcggaacgtttcgg
agaaGTTTCGTTCCGATGCAAATAGTGGAGCGAAAGCGTTTCGTTCTGTT
tcgctttgtaacgtcttctccTTTGATGTTTCGAACTCTGACGTTCACAC
GGTGTTTAGAGCAATACGATACCGTAAAGACTGAAAGACCAAAACCTTCT
TTTCGTGAATGGGCTAACGCCTTTAAAGACGAAGAACTGTGCACGCATTC
AATcgataaaaatctaaaataaaaattgaaatgttttgtTCGTATATATA
ACTTCAGATACCTGTGTCGCATGGAAGAGATGAGACAAAGTATGAGAATC
GTCTTCCAATGTTTGAACAAGATGCCACCTGGAGAGATCAAGATCGATGA
TGCCAAAGTGTCTCCTCCAAAACGTTCAGAGATGAAGGAATCTATGGAAG
CCCTCATTCATCACTTCAAACTTTACACCGAAGGCTACACTGTACCTCCT
GGTGAAACTTACACCGCTATCGAAGCTCCCAAGGTAGGTGGAAGGTTTCC
AATGATTTTGATTTGAGCCAATAAAAGAAGACTAGCGTATTCTTGCATAA
ACCATCTTTTATTCGCTCATACAAACTTCTCTTCACAACTTTAGGGTGAG
ATGGGCGTATATTTGGTATCAGATGGCTCAAGCAAACCGTACCGATGCAA
AATTCGTGCACCTGGTTTCTATCATCTCGTAAGTTAACATTTCATTCCCT
AATATTTTTAGCTCACAAAAAGGTGATGGAGGCAGTCCGGTTTTTTTGTG
TTAGCTTGTAATAAATCACATCCTTGAATGGTTTTAAATTAATATtaaaa
ttttcgataaattctttaaaatgatttATCCCGTTGCGATGATTACTCTC
TACTCTAATGTAAAACTCCACATTTAAGCTTTCACTTCAATATTAATTTG
TGGTTATTTTTTGCAGAGAAATCccctttttatcaaatattatgactttg
taTGTTCCAAAAGTTAATTGTTTctaattcttcttctttttcattctcCT
CACGATGACAGGCGAGCATGGATTACATGTCACGCGGACACATGTTAGCT
GATGTCGTAGCAATTATCGGTAAGTGAAAATATCCGTCGTCTTATTCTTG
CAAAGACGTTTCCTAACTTGGCCTGGAACAGCAGATTAGCCTTACAATTT
TAAGATTAGAATTTAGTCCTTCAGTGTTTCAGCCCTAGAATTTTGTTCTT
AGAGTTTCAGCCTTAGAATTTTGTCCTTAGAATTCGATTCAACAAGATGC
TCTTCCTCAAGAATTTACGTATTGACGTCCTTGAGACTATGTAGAGTTTC
GAACTACGGCGAGAGTTTATCTATCCTTCATGTGACCTCGACACACGATC
TAGAGGTTTTTATTTATATCCTAATTCGCTTCGCTCAAACGGATataact
tattttctttttgaacaaaCTAGGGAATCAAAGTATTCAATATGGATTGC
CGTGTATTTCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATACGATGAAAAATGGC
TGTTAAGGTACCTCTGGGAATTATATATATATCTATAAATCAATATAACT
TATATCCATATGGGACTACTGTATTGAGAAACCGTGAGATCATATAGTTA
TTAAGGTACCTTGGAGAATATATATTATTATCTGTTAGCCATAAAGCTTC
TATTCATGGGAGTAATGTTAGAGAGAATTAGCTAAAATGTTTGTAACTAT
TCCCTAGTGTATTCATAACAGAAAATACATTTAACGGTGACTGAGAAATT
GTGGTAAACtagtctttttgtttttgttttcaggaACTCAAGATATCGTG
TTCGGTGAAGTCGATCGTTAGACGAACGAGAGATtggaaataatattttt
aacaacaattattttttgttaCTTTTAATTGTTCAAcgaacaaaaacacc
aaaatgttTGTAATGCAATTTGTACATAAGAATCAAACTTATTAACTCGA
GAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005132TCONS_00005132Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005132-proteinTCONS_00005132-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:306410..315912 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
NDUFS2NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform 1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
228.59	223.61	275.83	279.21	96.84	77.34	129	137.4	139.52	129.61	125.94	134	101.4	102.39	102.95	114.65	257.49	262.06	64.46	73.56	194.89	204.32	137.77	137.03	192.84	181.73	108.64	88.09	97.95	90.86