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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005010 ID=TCONS_00005010|Name=TCONS_00005010|organism=Clytia hemisphaerica|type=transcript|length=1554bp
GCGAGGTAAAGACATCGTTTATAAACGCTCGATTTACGAcgaagcagcaa
aatttcaagaataaatATAGATAAAGAGAGAGGAGAATCGTTAAGCTAAA
AAAAGGGGGGAGAGTAATTAAAACCGGTCAATTATTAAAAGATtgctttt
aaatttcttttggattaaaaaaagaCAATAGTAGTCTCGGTTGATCGATC
ATCAATATAAAAGAGAGTAACATCCTTCGATACCGGTCAGTTATCTTACG
AGCAATGTTAAATACAGACCATTATTCAGCAGCTAATACTGTTAATAAAA
TGTGCTACCAAATGTATCCTCCAATAGAAGACGAATATCCATGTTTCAAC
CGTCTCTCATTGTGGAGTTTCATCTTCAACCTACTGGAAGACCAGCATAC
ACCTTGCGTCCGATGGACTGATCGAGAAAAACTGGAATTCAAAATCGAAG
ACACTGAAGGATTAGCTCAAGAATGGGGCCAACGTAAGGGCAAGAATACA
ATGACTTGGGCTAAATTCGCCAGAGCTATGCGATATTATTACGGTAAAGA
CGTCTTAGAGAAAGTCGAACGTAAACGATTCACCTATAAATTTATCGATT
CGCCCAAAACGCGATCAGTGATCAGATCAACTAACAGAGCTGGCAGATCA
ACAAATCCTTCACCGGTTTCACCAGCAATGTCGTCTACAGATTCCTCCAC
ACAATCCATCATCTCTGAAGAAGATTATGCCAATATCTCAACAGCAATTG
ATATTATGAATCCACCAACTATCACAACAGCTTCTGATGGAAACCTCCTC
ACAAACAACACCATCAGGATCAACAACAACACTTCTGCTTATACCAATGA
CAGCAAAGACTATGAACAAGTCAAAATTgaccaaatcaaaaaagaacTTG
AAATCTGTGTCACACAATGTCAGCACGCAGAACAGAATTCATATACACAA
CAACAATCAacaaactctctttacaattcAAACTCGTCTTTCAATACACA
GACTACAAATGCCAACATACAAAACCGTTTTTATAACCACCACCAAAATG
CTGTTTTCAATCTACCAACATTAAACGCGAATTACCAACCAACTGCATTC
AACTCGTCATCAAATGACCAAAAGGTTCCAAACGGGTATTCAGCTTCTAA
CTTCACTGATTATTTTGCCGAAGAAGACTTCTCACCTAGATCGAGTAACT
CACCACAACAGAGTTACTCCCCACAACCGAGTTACTCCCCACAACCGAGT
TATATTGAACGACAAAACTCGTTAACTGCTTGTGAAAGAGCAATCTTAGC
ATCACTTGTTGATACTTtccaataaaaagagacaattTTTCGACAACATT
ACAAAGACGCGTTATAAAAAACTAaattattttcagaaaaagttacaaca
acaaaaaaaacaaagagaaaatttATATTTGTAGGTAATGTTTATGTAGT
TTAGGTATTATATTATGGACTGTAAATATCAGAGTACTTGTAAATAATAT
TCGGGATATACAAAGGATTTAGAAAAAGATATCAATttaaaaataacatt
gaaa Run BLAST on NCBI protein sequence of TCONS_00005010-protein >TCONS_00005010-protein ID=TCONS_00005010-protein|Name=TCONS_00005010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MLNTDHYSAANTVNKMCYQMYPPIEDEYPCFNRLSLWSFIFNLLEDQHTP
CVRWTDREKLEFKIEDTEGLAQEWGQRKGKNTMTWAKFARAMRYYYGKDV
LEKVERKRFTYKFIDSPKTRSVIRSTNRAGRSTNPSPVSPAMSSTDSSTQ
SIISEEDYANISTAIDIMNPPTITTASDGNLLTNNTIRINNNTSAYTNDS
KDYEQVKIDQIKKELEICVTQCQHAEQNSYTQQQSTNSLYNSNSSFNTQT
TNANIQNRFYNHHQNAVFNLPTLNANYQPTAFNSSSNDQKVPNGYSASNF
TDYFAEEDFSPRSSNSPQQSYSPQPSYSPQPSYIERQNSLTACERAILAS
LVDTFQ Run BLAST on NCBI transcript from alignment at sc0000050:537622..539460+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005010 ID=TCONS_00005010|Name=TCONS_00005010|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at sc0000050:537622..539460+ (Clytia hemisphaerica)
GCGAGGTAAAGACATCGTTTATAAACGCTCGATTTACGAcgaagcagcaa
aatttcaagaataaatATAGATAAAGAGAGAGGAGAATCGTTAAGCTAAA
AAAAGGGGGGAGAGTAATTAAAACCGGTCAATTATTAAAAGATtgctttt
aaatttcttttggattaaaaaaagaCAATAGTAGTCTCGGTTGATCGATC
ATCAATATAAAAGAGAGTAACATCCTTCGATACCGGTCAGTTATCTTACG
AGCAATGTTAAATACAGACCATTATTCAGCAGCTAATACTGTTAATAAAA
TGTGCTACCAAATGTATCCTCCAATAGGTTAGTATCAatgtattttgttg
ttcttTCGTATACTCTCATCTTCGTCAACCATGATAATAAAGCATTGAAA
GAAACGTGCATTGTTGCATTCGCTCTTACATTTTTCGTATTGCAAAATTt
ctaaacttaatttttttaattttcattataGAAGACGAATATCCATGTTT
CANCttatttttcaatataaaaGCATTGAGGAAAACGTGCATTGTTGCAT
TCGCTCTTACATTTTTCGTATTGCAAAATTtctaaacttaatttttttaa
ttttcattataGAAGACGAATATCCATGTTTCAACCGTCTCTCATTGTGG
AGTTTCATCTTCAACCTACTGGAAGACCAGCATACACCTTGCGTCCGATG
GACTGATCGAGAAAAACTGGAATTCAAAATCGAAGACACTGAAGGATTAG
CTCAAGAATGGGGCCAACGTAAGGGCAAGAATACAATGACTTGGGCTAAA
TTCGCCAGAGCTATGCGATATTATTACGGTAAAGACGTCTTAGAGAAAGT
CGAACGTAAACGATTCACCTATAAATTTATCGATTCGCCCAAAACGCGAT
CAGTGATCAGATCAACTAACAGAGCTGGCAGATCAACAAATCCTTCACCG
GTTTCACCAGCAATGTCGTCTACAGATTCCTCCACACAATCCATCATCTC
TGAAGAAGATTATGCCAATATCTCAACAGCAATTGATATTATGAATCCAC
CAACTATCACAACAGCTTCTGATGGAAACCTCCTCACAAACAACACCATC
AGGATCAACAACAACACTTCTGCTTATACCAATGACAGCAAAGACTATGA
ACAAGTCAAAATTgaccaaatcaaaaaagaacTTGAAATCTGTGTCACAC
AATGTCAGCACGCAGAACAGAATTCATATACACAACAACAATCAacaaac
tctctttacaattcAAACTCGTCTTTCAATACACAGACTACAAATGCCAA
CATACAAAACCGTTTTTATAACCACCACCAAAATGCTGTTTTCAATCTAC
CAACATTAAACGCGAATTACCAACCAACTGCATTCAACTCGTCATCAAAT
GACCAAAAGGTTCCAAACGGGTATTCAGCTTCTAACTTCACTGATTATTT
TGCCGAAGAAGACTTCTCACCTAGATCGAGTAACTCACCACAACAGAGTT
ACTCCCCACAACCGAGTTACTCCCCACAACCGAGTTATATTGAACGACAA
AACTCGTTAACTGCTTGTGAAAGAGCAATCTTAGCATCACTTGTTGATAC
TTtccaataaaaagagacaattTTTCGACAACATTACAAAGACGCGTTAT
AAAAAACTAaattattttcagaaaaagttacaacaacaaaaaaaacaaag
agaaaatttATATTTGTAGGTAATGTTTATGTAGTTTAGGTATTATATTA
TGGACTGTAAATATCAGAGTACTTGTAAATAATATTCGGGATATACAAAG
GATTTAGAAAAAGATATCAATttaaaaataacattgaaa Coding sequence (CDS) from alignment at sc0000050:537622..539460+ >TCONS_00005010 ID=TCONS_00005010|Name=TCONS_00005010|organism=Clytia hemisphaerica|type=CDS|length=3213bp|location=Sequence derived from alignment at sc0000050:537622..539460+ (Clytia hemisphaerica)
ATGTTAAATACAGACCATTATTCAGCAGCTAATACTGTTAATAAAATGTG
CTACCAAATGTATCCTCCAATAGAAGACGAATATCCATGTTTCAACCGTC
TCTCATTGTGGAGTTTCATCTTCAACCTACTGGAAGACCAGCATACACCT
TGCGTCCGATGGACTGATCGAGAAAAACTGGAATTCAAAATCGAAGACAC
TGAAGGATTAGCTCAAGAATGGGGCCAACGTAAGGGCAAGAATACAATGA
CTTGGGCTAAATTCGCCAGAGCTATGCGATATTATTACGGTAAAGACGTC
TTAGAGAAAGTCGAACGTAAACGATTCACCTATAAATTTATCGATTCGCC
CAAAACGCGATCAGTGATCAGATCAACTAACAGAGCTGGCAGATCAACAA
ATCCTTCACCGGTTTCACCAGCAATGTCGTCTACAGATTCCTCCACACAA
TCCATCATCTCTGAAGAAGATTATGCCAATATCTCAACAGCAATTGATAT
TATGAATCCACCAACTATCACAACAGCTTCTGATGGAAACCTCCTCACAA
ACAACACCATCAGGATCAACAACAACACTTCTGCTTATACCAATGACAGC
AAAGACTATGAACAAGTCAAAATTgaccaaatcaaaaaagaacTTGAAAT
CTGTGTCACACAATGTCAGCACGCAGAACAGAATTCATATACACAACAAC
AATCAacaaactctctttacaattcAAACTCGTCTTTCAATACACAGACT
ACAAATGCCAACATACAAAACCGTTTTTATAACCACCACCAAAATGCTGT
TTTCAATCTACCAACATTAAACGCGAATTACCAACCAACTGCATTCAACT
CGTCATCAAATGACCAAAAGGTTCCAAACGGGTATTCAGCTTCTAACTTC
ACTGATTATTTTGCCGAAGAAGACTTCTCACCTAGATCGAGTAACTCACC
ACAACAGAGTTACTCCCCACAACCGAGTTACTCCCCACAACCGAGTTATA
TTGAACGACAAAACTCGTTAACTGCTTGTGAAAGAGCAATCTTAGCATCA
CTTGTTGATACTTtccaataaATGTTAAATACAGACCATTATTCAGCAGC
TAATACTGTTAATAAAATGTGCTACCAAATGTATCCTCCAATAGAAGACG
AATATCCATGTTTCAACCGTCTCTCATTGTGGAGTTTCATCTTCAACCTA
CTGGAAGACCAGCATACACCTTGCGTCCGATGGACTGATCGAGAAAAACT
GGAATTCAAAATCGAAGACACTGAAGGATTAGCTCAAGAATGGGGCCAAC
GTAAGGGCAAGAATACAATGACTTGGGCTAAATTCGCCAGAGCTATGCGA
TATTATTACGGTAAAGACGTCTTAGAGAAAGTCGAACGTAAACGATTCAC
CTATAAATTTATCGATTCGCCCAAAACGCGATCAGTGATCAGATCAACTA
ACAGAGCTGGCAGATCAACAAATCCTTCACCGGTTTCACCAGCAATGTCG
TCTACAGATTCCTCCACACAATCCATCATCTCTGAAGAAGATTATGCCAA
TATCTCAACAGCAATTGATATTATGAATCCACCAACTATCACAACAGCTT
CTGATGGAAACCTCCTCACAAACAACACCATCAGGATCAACAACAACACT
TCTGCTTATACCAATGACAGCAAAGACTATGAACAAGTCAAAATTgacca
aatcaaaaaagaacTTGAAATCTGTGTCACACAATGTCAGCACGCAGAAC
AGAATTCATATACACAACAACAATCAacaaactctctttacaattcAAAC
TCGTCTTTCAATACACAGACTACAAATGCCAACATACAAAACCGTTTTTA
TAACCACCACCAAAATGCTGTTTTCAATCTACCAACATTAAACGCGAATT
ACCAACCAACTGCATTCAACTCGTCATCAAATGACCAAAAGGTTCCAAAC
GGGTATTCAGCTTCTAACTTCACTGATTATTTTGCCGAAGAAGACTTCTC
ACCTAGATCGAGTAACTCACCACAACAGAGTTACTCCCCACAACCGAGTT
ACTCCCCACAACCGAGTTATATTGAACGACAAAACTCGTTAACTGCTTGT
GAAAGAGCAATCTTAGCATCACTTGTTGATACTTtccaataaATGTTAAA
TACAGACCATTATTCAGCAGCTAATACTGTTAATAAAATGTGCTACCAAA
TGTATCCTCCAATAGAAGACGAATATCCATGTTTCAACCGTCTCTCATTG
TGGAGTTTCATCTTCAACCTACTGGAAGACCAGCATACACCTTGCGTCCG
ATGGACTGATCGAGAAAAACTGGAATTCAAAATCGAAGACACTGAAGGAT
TAGCTCAAGAATGGGGCCAACGTAAGGGCAAGAATACAATGACTTGGGCT
AAATTCGCCAGAGCTATGCGATATTATTACGGTAAAGACGTCTTAGAGAA
AGTCGAACGTAAACGATTCACCTATAAATTTATCGATTCGCCCAAAACGC
GATCAGTGATCAGATCAACTAACAGAGCTGGCAGATCAACAAATCCTTCA
CCGGTTTCACCAGCAATGTCGTCTACAGATTCCTCCACACAATCCATCAT
CTCTGAAGAAGATTATGCCAATATCTCAACAGCAATTGATATTATGAATC
CACCAACTATCACAACAGCTTCTGATGGAAACCTCCTCACAAACAACACC
ATCAGGATCAACAACAACACTTCTGCTTATACCAATGACAGCAAAGACTA
TGAACAAGTCAAAATTgaccaaatcaaaaaagaacTTGAAATCTGTGTCA
CACAATGTCAGCACGCAGAACAGAATTCATATACACAACAACAATCAaca
aactctctttacaattcAAACTCGTCTTTCAATACACAGACTACAAATGC
CAACATACAAAACCGTTTTTATAACCACCACCAAAATGCTGTTTTCAATC
TACCAACATTAAACGCGAATTACCAACCAACTGCATTCAACTCGTCATCA
AATGACCAAAAGGTTCCAAACGGGTATTCAGCTTCTAACTTCACTGATTA
TTTTGCCGAAGAAGACTTCTCACCTAGATCGAGTAACTCACCACAACAGA
GTTACTCCCCACAACCGAGTTACTCCCCACAACCGAGTTATATTGAACGA
CAAAACTCGTTAACTGCTTGTGAAAGAGCAATCTTAGCATCACTTGTTGA
TACTTtccaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005010-exon-sc0000050-1491911889:537622..537948 | TCONS_00005010-exon-sc0000050-1491911889:537622..537948 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1510915933:537622..537948 | TCONS_00005010-exon-sc0000050-1510915933:537622..537948 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1575043694:537622..537948 | TCONS_00005010-exon-sc0000050-1575043694:537622..537948 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1491911889:538103..538117 | TCONS_00005010-exon-sc0000050-1491911889:538103..538117 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1510915933:538103..538117 | TCONS_00005010-exon-sc0000050-1510915933:538103..538117 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1575043694:538103..538117 | TCONS_00005010-exon-sc0000050-1575043694:538103..538117 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1491911889:538249..539460 | TCONS_00005010-exon-sc0000050-1491911889:538249..539460 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1510915933:538249..539460 | TCONS_00005010-exon-sc0000050-1510915933:538249..539460 | Clytia hemisphaerica | exon |
| TCONS_00005010-exon-sc0000050-1575043694:538249..539460 | TCONS_00005010-exon-sc0000050-1575043694:538249..539460 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:537622..539460 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00005010 vs. Swiss-Prot (Human)
Match: ELF2 (ETS-related transcription factor Elf-2 OS=Homo sapiens GN=ELF2 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 3.328e-18 Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 3
Query: 360 LWSFIFNLLEDQHTPC---VRWTDREKLEFKIEDTEGLAQEWGQRKGKNTMTWAKFARAMRYYYGKDVLEKVERKRFTYKFIDSPKTRSVI 623
LW F+ +LL+D++T C ++WT REK FK+ D++ +++ WG+ K K M + RA+RYYY + +L KVE +R Y+F D PK VI
Sbjct: 210 LWEFLLDLLQDKNT-CPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVI 299
The following BLAST results are available for this feature:
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