TCONS_00005010-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005010-protein
Unique NameTCONS_00005010-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005010-protein ID=TCONS_00005010-protein|Name=TCONS_00005010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MLNTDHYSAANTVNKMCYQMYPPIEDEYPCFNRLSLWSFIFNLLEDQHTP
CVRWTDREKLEFKIEDTEGLAQEWGQRKGKNTMTWAKFARAMRYYYGKDV
LEKVERKRFTYKFIDSPKTRSVIRSTNRAGRSTNPSPVSPAMSSTDSSTQ
SIISEEDYANISTAIDIMNPPTITTASDGNLLTNNTIRINNNTSAYTNDS
KDYEQVKIDQIKKELEICVTQCQHAEQNSYTQQQSTNSLYNSNSSFNTQT
TNANIQNRFYNHHQNAVFNLPTLNANYQPTAFNSSSNDQKVPNGYSASNF
TDYFAEEDFSPRSSNSPQQSYSPQPSYSPQPSYIERQNSLTACERAILAS
LVDTFQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002839XLOC_002839Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005010TCONS_00005010Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 208..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..332
IPR000418Ets domainPRINTSPR00454ETSDOMAINcoord: 34..47
score: 40.51
coord: 77..95
score: 46.32
coord: 96..114
score: 39.87
coord: 58..76
score: 37.68
IPR000418Ets domainSMARTSM00413etsneu2coord: 33..118
e-value: 2.4E-34
score: 130.1
IPR000418Ets domainPFAMPF00178Etscoord: 36..114
e-value: 1.7E-27
score: 95.6
IPR000418Ets domainPROSITEPS50061ETS_DOMAIN_3coord: 34..114
score: 24.15
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 24..135
e-value: 3.7E-29
score: 100.6
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 25..123

Blast
[Close]
BLAST of TCONS_00005010-protein vs. Swiss-Prot (Human)
Match: ELF2 (ETS-related transcription factor Elf-2 OS=Homo sapiens GN=ELF2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.951e-20
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 0 
Query:   36 LWSFIFNLLEDQHTPC---VRWTDREKLEFKIEDTEGLAQEWGQRKGKNTMTWAKFARAMRYYYGKDVLEKVERKRFTYKFIDSPKTRSVI 123
            LW F+ +LL+D++T C   ++WT REK  FK+ D++ +++ WG+ K K  M +    RA+RYYY + +L KVE +R  Y+F D PK   VI
Sbjct:  210 LWEFLLDLLQDKNT-CPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVI 299
The following BLAST results are available for this feature:
BLAST of TCONS_00005010-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELF25.951e-2042.86ETS-related transcription factor Elf-2 OS=Homo sap... [more]
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