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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005007 ID=TCONS_00005007|Name=TCONS_00005007|organism=Clytia hemisphaerica|type=transcript|length=1335bp
GTCTCACTTTGTTTTTGGCATTTGGTATTTTGAAAGGTACATCTTGGTAT
TGATTGCAGTATGTCATTTCGCATTCCTCTTCAATGTAGCGGATGCTGAG
CATGATAGACGATGTGTGTTCATCTGCAGGATGAGATTTAGTCATTGTGA
CCAGAAGAAGACTATCGACGGTGCTCCTGTCGGCGGTGGACCAAAATGCG
ATAAGCCAGAATTACGGCAACAATGTGTCCAGGACTGTGGTCTGCGATTT
AAGTTAGAGAACTTCTGTCGGGGTAAAGGAAAATCCGACTCGTGGTGCCA
AGGTGTCTTCAAAGGATACttaaaagcaaaaatgaaaagtttactTTAAA
AACTATGATATGGACACCAAATGAAATGTTTGCTAATTTTGAAAAGGGTA
GTCATTTTGGATAAGGACAGGAGAGAGGTGATTGGAGTGTATCATTTATC
TTGCATCTTGCAATGAAGGGACAATTTTTGTTGTTCTTGACGACAGATTG
ACTTCTACTTTTTATCTTTACGATAATAAAAAATGAGCTGTTGTGTTGTC
AAGAGAAGGGAAAAGAAGAAACAGATGGAAAACCAATGTATAAGTATAAG
TATAAGTCCCAAGGGCTAGAAACGAATCTTTAacttttctcaggcaagaa
aaaatgaagcctATGCGCTGTATTTTTGACAACGGATTTAATAtagcaat
tcttttgtttttgagtaatatttttttccgaaatttagcggtaaatttta
gtttcaaacTGGCATTTGTgcaaaaaccaggcgagccgctcaaggccgcg
caactttggtaggatttgttggcttcaaatcctaccaaggagattcgctt
ctaacccttcgggcttatacttcattgtggAAAACCTATACAGTTCTGTA
TCAAGAAAAATGTCATAGTTTATAATATGTCGTTTAtgcttattcatgat
attcatgacgtaatgttttctacggaaacaaccccgttttagccagtagt
gggaaacattatacaacttttgtctagtttaaatttgccactactggcta
aaaccggggtttttccgtagaaaacattacgtaatgaatatcatgaattc
tcaTCAGTGCAGTGAAACATCATCAAATGTTTTCAAGAATGCCATCTCCT
TAATTATACTAATTTTCTAATCTATGATTGTGGATATACCATTAATTAAT
ATATTGTTATTTTAAATAATTCACATTGAATTGTTAGTGTGTAAttcttt
tggaatttttgaTCAAAAAATGACCTGCGTTCATTTATTGCTTGAAGTCC
AAAGATTTGAATAGAAAAGTTTCCTGATTTCgtcg Run BLAST on NCBI protein sequence of TCONS_00005007-protein >TCONS_00005007-protein ID=TCONS_00005007-protein|Name=TCONS_00005007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
SHFVFGIWYFERYILVLIAVCHFAFLFNVADAEHDRRCVFICRMRFSHCD
QKKTIDGAPVGGGPKCDKPELRQQCVQDCGLRFKLENFCRGKGKSDSWCQ
GVFKGYLKAKMKSLL Run BLAST on NCBI transcript from alignment at sc0000050:524536..528109+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005007 ID=TCONS_00005007|Name=TCONS_00005007|organism=Clytia hemisphaerica|type=transcript|length=3574bp|location=Sequence derived from alignment at sc0000050:524536..528109+ (Clytia hemisphaerica)
GTCTCACTTTGTTTTTGGCATTTGGTATTTTGAAAGGTAAGACCATAGTG
CATTCTTAAAGACTTGGAAATTTCCAAAATCCGGCAATATACTTTCCTCT
CTTTCGCTATTAACAAAGCTTAAAATGATCAACTCTTTACGAGTTATGAG
AATGAAAAGTGTCAGAGTTTTTGCATTTCTAGTCCATACACCTTTTCGCC
CGTAGCCGCCCATTGCCGCGCGttcattttttaccaccctaagGCCGTCC
CAGTtattttttcgcacctatagacaataatagaaaaaaagactggggcg
GTTTTATGGTGGTAagacggacaaaaaaatgcccacgcggcaattggcgg
ctacggtcgaaaagttgTATTGCAGTCATGTGAATCCGTATCTGTCGAGA
AAGCGATTTTCCACAGTTTCCAAAGCCAGTCAGGTTAAAGAGAAATGGTT
TTTCCAAATGACGTCAACCTATTCTTCTCAACATTCAGGAACTTTGAAAT
ATGTTCAATAAACTGCATTTAATGTAAAAAGAATGCTAAATTTTAGGATG
CGATTTGTTACATTTCATTTCAATGGAATGCACACAGACAAGGGAAATAA
TAGACCATACCCAAGTGACGTCAAACCATTCAGGAACTTTGCAaatgttt
tcaatttcattttcataaatATGACATCGCTTTTTTGTGTAGTTTTCAAA
GACAAGGATATTCAGCTTTTCTTGGATTTCTATGgtatttcagtcccatt
cacaaattttgtaaaagttttaaaaaaggaAGAGTCCCACAACGTAGGGT
CTATTTTTTCGGACCTCAGCAGCACACTCCACTCGGTCGACAAGGATAAT
ACCCCCGGAAGTTCCAAGTGACGTGTTTCTAAAGGAGATGGATTCTCCAT
AATGGAGGTAAAAGAAAAGTACCCACTAGCAGCAAATCCCCACACCCCTT
TTTGTCTAAGTCCCCCCCCATACCCGGGCCTGGAACACACCGTAAAATCA
ATATCTATTCTATTTAACACATAAATCGTCAAACAATGACGATAAAAGGA
CAGAGACTCTTCTCTCTGTTATACAGTTGCTAAAGCCATCGTCATGACAC
AAAACCCGGTAAGATCGGATTCAACAAACGGGTTTCTCTCTCCAGGTTTC
CGAGTTAAGACATTTCTTGTTGCTTAGAGAAACCCAAAATTGTCAAGTCA
ATGAAAATATGACATTAAAATAACATCcaaatataattttataatgatAA
TCCTTCAAACCACAACCTTTGTGTTTCAATTAAAATGGAGAAGTGTTTGG
CGGGTTAGAGCGCTAGTGTATTACATGGGTGAGCTTCGTATTAAAGACAT
TGAGACATTCTATCGATTGATCCCACGTGTTGTAGGGACAATCGGATCTT
CAAACCCTCTTAACTGCATTGACATGAAAGGGGTCAGTAATTTGAACCTC
TGGTTTATACAGCAGTAGCAATTGCTTAGGAAGCCAGATATGGTATAAAC
CCACAGGCAGAATTTGCGATGGTTTCTAAGCTAAAACAAGCAGGGAAACC
ACCACTGAAAGATATCCAGCCCTAAAAAACTACCACTCCGTAACttcaag
ttttcaaatatttgcgATTTCAAATTCGCGTACACACCCTAACTAAGAAA
AAATGCCAATCGCCTACCGGCGCAGGGCCGAAAAAATCTCGTAGGTATTA
TGCCAGTGGCACTTCAAGGGTTAACAACAGCAAACTGCTATACGTCACGA
TCTAAACATGGCACTCAGAGAGCGAAGCTCATACGTAGAAAACTTCACGA
GTGTATTGTATATACTTGTATCACATGAGCTAGTCAAAGGCTAGAGACGA
ACCATCAACCTTTTTAAAGCAAGCAAATGTGGTGCCTTTAAATTTGCGAT
GCATTTCAGAAGACAGATCGAATATACcgttttcatttgttttggggttt
tgaattttcaaattctggTGGTAAATGTTACTTCTAATCCAGCGTTTGTA
GGAAAAGCATGCAGACCGTGGGCACAACTTATGTAGGAAAAAAGTGTCTT
CAGATCCTATAGGAGATTTGAATTAACCACTTCAATATAAAGCTTAAAGA
AGGCTACGTGCAATTTATGAGTGGATTAGAATCCCTACTTTTCTTTACAT
CCCAAAAAACCGTTACTATTCAGCTCTATTTCCCTTGAGGTTTTGTTAGG
CTTAAAGTAATTTTAAACAGTTCACAGgaaagtaaaagtaaaacttAACG
ACTCACTATTTCTAATCTCTCATAGGTACATCTTGGTATTGATTGCAGTA
TGTCATTTCGCATTCCTCTTCAATGTAGCGGATGCTGAGCATGATAGACG
ATGTGTGTTCATCTGCAGGATGAGATTTAGTCATTGTGACCAGAAGAAGA
CTATCGACGGTGCTCCTGTCGGCGGTGGACCAAAATGCGATAAGCCAGAA
TTACGGCAACAATGTGTCCAGGACTGTGGTCTGCGATTTAAGTTAGAGAA
CTTCTGTCGGGGTAAAGGAAAATCCGACTCGTGGTGCCAAGGTGTCTTCA
AAGGATACttaaaagcaaaaatgaaaagtttactTTAAAAACTATGATAT
GGACACCAAATGAAATGTTTGCTAATTTTGAAAAGGGTAGTCATTTTGGA
TAAGGACAGGAGAGAGGTGATTGGAGTGTATCATTTATCTTGCATCTTGC
AATGAAGGGACAATTTTTGTTGTTCTTGACGACAGATTGACTTCTACTTT
TTATCTTTACGATAATAAAAAATGAGCTGTTGTGTTGTCAAGAGAAGGGA
AAAGAAGAAACAGATGGAAAACCAATGTATAAGTATAAGTATAAGTCCCA
AGGGCTAGAAACGAATCTTTAacttttctcaggcaagaaaaaatgaagcc
tATGCGCTGTATTTTTGACAACGGATTTAATAtagcaattcttttgtttt
tgagtaatatttttttccgaaatttagcggtaaattttagtttcaaacTG
GCATTTGTgcaaaaaccaggcgagccgctcaaggccgcgcaactttggta
ggatttgttggcttcaaatcctaccaaggagattcgcttctaacccttcg
ggcttatacttcattgtggAAAACCTATACAGTTCTGTATCAAGAAAAAT
GTCATAGTTTATAATATGTCGTTTAtgcttattcatgatattcatgacgt
aatgttttctacggaaacaaccccgttttagccagtagtgggaaacatta
tacaacttttgtctagtttaaatttgccactactggctaaaaccggggtt
tttccgtagaaaacattacgtaatgaatatcatgaattctcaTCAGTGCA
GTGAAACATCATCAAATGTTTTCAAGAATGCCATCTCCTTAATTATACTA
ATTTTCTAATCTATGATTGTGGATATACCATTAATTAATATATTGTTATT
TTAAATAATTCACATTGAATTGTTAGTGTGTAAttcttttggaatttttg
aTCAAAAAATGACCTGCGTTCATTTATTGCTTGAAGTCCAAAGATTTGAA
TAGAAAAGTTTCCTGATTTCgtcg Coding sequence (CDS) from alignment at sc0000050:524536..528109+ >TCONS_00005007 ID=TCONS_00005007|Name=TCONS_00005007|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000050:524536..528109+ (Clytia hemisphaerica)
TCTCACTTTGTTTTTGGCATTTGGTATTTTGAAAGGTACATCTTGGTATT
GATTGCAGTATGTCATTTCGCATTCCTCTTCAATGTAGCGGATGCTGAGC
ATGATAGACGATGTGTGTTCATCTGCAGGATGAGATTTAGTCATTGTGAC
CAGAAGAAGACTATCGACGGTGCTCCTGTCGGCGGTGGACCAAAATGCGA
TAAGCCAGAATTACGGCAACAATGTGTCCAGGACTGTGGTCTGCGATTTA
AGTTAGAGAACTTCTGTCGGGGTAAAGGAAAATCCGACTCGTGGTGCCAA
GGTGTCTTCAAAGGATACttaaaagcaaaaatgaaaagtttactTTAATC
TCACTTTGTTTTTGGCATTTGGTATTTTGAAAGGTACATCTTGGTATTGA
TTGCAGTATGTCATTTCGCATTCCTCTTCAATGTAGCGGATGCTGAGCAT
GATAGACGATGTGTGTTCATCTGCAGGATGAGATTTAGTCATTGTGACCA
GAAGAAGACTATCGACGGTGCTCCTGTCGGCGGTGGACCAAAATGCGATA
AGCCAGAATTACGGCAACAATGTGTCCAGGACTGTGGTCTGCGATTTAAG
TTAGAGAACTTCTGTCGGGGTAAAGGAAAATCCGACTCGTGGTGCCAAGG
TGTCTTCAAAGGATACttaaaagcaaaaatgaaaagtttactTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005007-exon-sc0000050-1491911889:524536..524571 | TCONS_00005007-exon-sc0000050-1491911889:524536..524571 | Clytia hemisphaerica | exon |
| TCONS_00005007-exon-sc0000050-1510915933:524536..524571 | TCONS_00005007-exon-sc0000050-1510915933:524536..524571 | Clytia hemisphaerica | exon |
| TCONS_00005007-exon-sc0000050-1575043694:524536..524571 | TCONS_00005007-exon-sc0000050-1575043694:524536..524571 | Clytia hemisphaerica | exon |
| TCONS_00005007-exon-sc0000050-1491911889:526811..528109 | TCONS_00005007-exon-sc0000050-1491911889:526811..528109 | Clytia hemisphaerica | exon |
| TCONS_00005007-exon-sc0000050-1510915933:526811..528109 | TCONS_00005007-exon-sc0000050-1510915933:526811..528109 | Clytia hemisphaerica | exon |
| TCONS_00005007-exon-sc0000050-1575043694:526811..528109 | TCONS_00005007-exon-sc0000050-1575043694:526811..528109 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:524536..528109 + |
Blast
The following BLAST results are available for this feature:
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