|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005006 ID=TCONS_00005006|Name=TCONS_00005006|organism=Clytia hemisphaerica|type=transcript|length=1910bp
ggttgaaataaaagttggaggaaattttgaaattgatatAAAATGTTTCA
AAGATGTGTTGTGAAACCACATAGCTGGTGTGTCTGTTCTGTGGATCAGA
ACAGAATCTCATAGGAGATCAACCGCACACTAGAACTACAATCAAGAAAA
CTCaacgaacaaaaaaaacatttaacacAAAATACTGGACTGAGAAAGAA
ACACACCGAACAAAGTtgataatttgaaagaaaacacaCTATTCTTATTC
AAGCACATTTACGGACAATTTACGGACGGCTGTTAATATCATCTAGAAGA
TTATTTTTCCTACCCTTCTAATATACTCTGTTAGAAATAATTACTGCTTG
TTAAAACGAAGAAGAGAGCAATCAACGATACAGTAGTCAGTAGAATATCA
CAAGAAGAAACACAACGAAGAAATATCGTAATAGCAAACAGAGGTGGATT
CCATAGGGACAATCTCTTTCATTCTACATACATTATTGAATAATCGATAT
TGCCTTAAATGTTGGATGTGATATTTTGTTACTATATTACACTATCATAA
ATCACGAGTTCGAGAAGAGAACACAATCCCAGCGCTACGAAAGAAAAGAC
ATGGCGATCAGGTACATCTTGGTATTGATTGCAGTATGTCATTTCGCATT
CCTCTTCAATGTAGCGGATGCTGAGCATGATAGACGATGTGTGTTCATCT
GCAGGATGAGATTTAGTCATTGTGACCAGAAGAAGACTATCGACGGTGCT
CCTGTCGGCGGTGGACCAAAATGCGATAAGCCAGAATTACGGCAACAATG
TGTCCAGGACTGTGGTCTGCGATTTAAGTTAGAGAACTTCTGTCGGGGTA
AAGGAAAATCCGACTCGTGGTGCCAAGGTGTCTTCAAAGGATACttaaaa
gcaaaaatgaaaagtttactTTAAAAACTATGATATGGACACCAAATGAA
ATGTTTGCTAATTTTGAAAAGGGTAGTCATTTTGGATAAGGACAGGAGAG
AGGTGATTGGAGTGTATCATTTATCTTGCATCTTGCAATGAAGGGACAAT
TTTTGTTGTTCTTGACGACAGATTGACTTCTACTTTTTATCTTTACGATA
ATAAAAAATGAGCTGTTGTGTTGTCAAGAGAAGGGAAAAGAAGAAACAGA
TGGAAAACCAATGTATAAGTATAAGTATAAGTCCCAAGGGCTAGAAACGA
ATCTTTAacttttctcaggcaagaaaaaatgaagcctATGCGCTGTATTT
TTGACAACGGATTTAATAtagcaattcttttgtttttgagtaatattttt
ttccgaaatttagcggtaaattttagtttcaaacTGGCATTTGTgcaaaa
accaggcgagccgctcaaggccgcgcaactttggtaggatttgttggctt
caaatcctaccaaggagattcgcttctaacccttcgggcttatacttcat
tgtggAAAACCTATACAGTTCTGTATCAAGAAAAATGTCATAGTTTATAA
TATGTCGTTTAtgcttattcatgatattcatgacgtaatgttttctacgg
aaacaaccccgttttagccagtagtgggaaacattatacaacttttgtct
agtttaaatttgccactactggctaaaaccggggtttttccgtagaaaac
attacgtaatgaatatcatgaattctcaTCAGTGCAGTGAAACATCATCA
AATGTTTTCAAGAATGCCATCTCCTTAATTATACTAATTTTCTAATCTAT
GATTGTGGATATACCATTAATTAATATATTGTTATTTTAAATAATTCACA
TTGAATTGTTAGTGTGTAAttcttttggaatttttgaTCAAAAAATGACC
TGCGTTCATTTATTGCTTGAAGTCCAAAGATTTGAATAGAAAAGTTTCCT
GATTTCgtcg Run BLAST on NCBI transcript from alignment at sc0000050:521627..528109+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005006 ID=TCONS_00005006|Name=TCONS_00005006|organism=Clytia hemisphaerica|type=transcript|length=6483bp|location=Sequence derived from alignment at sc0000050:521627..528109+ (Clytia hemisphaerica)
ggttgaaataaaagttggaggaaattttgaaattgatatAAAATGTTTCA
AAGATGTGTTGTGAAACCACATAGCTGGTGTGTCTGTTCTGTGGATCAGA
ACAGAATCTCATAGGAGATCAACCGCACACTAGAACTACAATCAAGAAAA
CTCaacgaacaaaaaaaacatttaacacAAAATACTGGACTGAGAAAGAA
ACACACCGAACAAAGTtgataatttgaaagaaaacacaCTATTCTTATTC
AAGCACATTTACGGACAATTTACGGACGGCTGTTAATATCATCTAGAAGA
TTATTTTTCCTACCCTTCTAATATACTCTGTTAGAAATAATTACTGCTTG
TTAAAACGAAGAAGAGAGCAATCAACGATACAGTAGTCAGTAGAATATCA
CAAGAAGAAACACAACGAAGAAATATCGTAATAGCAAACAGAGGTGGATT
CCATAGGGACAATCTCTTTCATTCTACATACATTATTGAATAATCGATAT
TGCCTTAAATGTTGGATGTGATATTTTGTTACTATATTACACTATCATAA
ATCACGAGTTCGAGAAGAGAACACAATCCCAGCGCTACGAAAGAAAAGAC
ATGGCGATCAGGTAAAGAATTTAATCTGTTTTAATTGCGACTGTTATATC
TTATCGAAGCTTAAGGCAGGTATTCTTCTATGACACATCTAGGAGTTTAA
GTTTTATACGCTAAAAGTTGGGAAAATCAGCTTGAATGGGCGAAGAGAAA
GTTTTGGTTTTGAGAGGCCTTTTCATAGATtgtctcgttttgaaaccatt
accaaggtgagGTGATTAAACTCCTTGAGTGCTCAATCGTTATTTGTATA
AATATAGAGTAGACTTCTTAGgaactcctctgggaatcaattaccatagg
AATATTTTGAACACGAGGCAAGAGTTGCtggtgacgtaatttatgaaaag
gtctatatacACCTTGTATTTATTCTGACTCcattggagtttgaaaagtg
gacgcTGTCAGGTACGAATGTTCGGTAAAATTGGGATCCTCTATTGTTTA
TTTGCCACCCCAAAAGTTgtctaaaatgaccaaaagcCGAACTTGTCAGA
TACACATCGtgaaattagtaaatttgggaccctgtaagctatcttcagag
cctaaagaAGAGATCCTCACCAGCGGACCATCTCCGTTGTCAATTTTGAT
GATTGTAGAAAtatcataattttatttgtcaGTAAAAAATTACACTACTG
TCAGTTTCACGCTGAACGATTGTCAAGAACGATTGTAGAAATAAGGATTT
TGGCGTCACGTTGCCAGTGAATATTAGATAAGAAAGTACGCGAGCTAAGC
GGGGGAGAAATTCGGACTGAAAAACTGCTATTTTAGGGGAAGGAAAAGCG
ACGCTAAAATGAGCGATCCAGTATCATTATGACACTTGTCATTCAGTTCC
TCCAAAAATGTGGGAGGCATCATCCTGCCACCATACGTCACCTCACTACT
GCTAAATTATCCCGCAAAAATCGAAAAGCTGTATCTTAGCGAAAtcttta
ttttgttgttgagtgaCGTACTAAAGGGTCCAACGAAATAGGGGAAGAAT
GATTTCAACACAAGAAATAAAACATTGTTATTTATAGAAAATAGCAACAT
TCTTGATTAAAAGTATGAAGACGTGACAGGATAATTTCAATTGTTTCTCC
TGACAAATAGACAATAACTTGATGACGAAAAAAGAAGAACATGGGAAGTC
CACAAATAGTAAGGGGATGGAAATTAATTTGACTTGCGAGAGATATCCAT
GATAAAATTTCCTTtaattttctataagaataatCGTATCAAAAATGTTA
TTTCGAGAAATAAAAGAGTTTTTAAAgcaattcgatcttcaagggaacAA
GAACTGTAtccgaattagagaaaaattcgaattacagagagtatttcATA
TTGCTTTCCAACTGAAGGGACTAATTATTTACTTCGAAtcatagaaagat
tcaaataatagaaaatCGAGTAAGTTCGCATTAGCGTAGATAGGAGggac
gcaaaatttgtgtaggagagcagatttttatgacactgtgattatctatt
cataatataaaagaataattacagtgtcacaaaaatctgctctccttcAC
AAATTTTGaccttgtctacgctactggttGGAGAGTCTGCTGTAGTAATT
TGAAGCTTTATAAGCCAAAACGTTTGCCAGTGTTTCTTACAATGTCAACT
ACCGGAACGCCAACTGCATTCACGCACAGACATGAATAAAAGGGGAGGTG
TATTCTCATTAGAATTCACATCATTGAAAATGAGGAAATCCTGGACATGT
TGTCTTAGATATCCTCTCTCCACCTACACATCATGGATGAGATAATGTGT
ATTGCACTAATATGACGCAAGAGAAGGATCTTTATATTATTCTTTACAGT
TTCAAAGAGTGGACACTTAGCAGTATGTGTAGATTTTCTTATTAGACTAT
GCATAGTCTAaaacgaatcactatctaagaaataagcccaaagccgaaga
aaattcgcaagcggtttttttttgccgaaaagagtttacagtcggtagag
tttgccagtcttcgaaactctcctgccgatttttttttccgtatacgacc
atattttcccgcctttactatcactgtaacggacgatatcATCGTCCAAC
TTTTTATATGACGTCagcaaataattttcaaatctgCGTTTTCAGGATAT
TTTCTAGTTGCAGAAAAAGTGGATCTTGTACATTTTGCATTCATTGCCCT
TGTAAAAGTGAGTGTTAGAGTCTTCAAGATGGGGTACTCCGAAAGGCACT
TGTAAAGTTGTAACTTCACAGTGTTGCCGAATCAGAAGAAGTTTATACAG
CCTATGCAGGTCTCACTTTGTTTTTGGCATTTGGTATTTTGAAAGGTAAG
ACCATAGTGCATTCTTAAAGACTTGGAAATTTCCAAAATCCGGCAATATA
CTTTCCTCTCTTTCGCTATTAACAAAGCTTAAAATGATCAACTCTTTACG
AGTTATGAGAATGAAAAGTGTCAGAGTTTTTGCATTTCTAGTCCATACAC
CTTTTCGCCCGTAGCCGCCCATTGCCGCGCGttcattttttaccacccta
agGCCGTCCCAGTtattttttcgcacctatagacaataatagaaaaaaag
actggggcgGTTTTATGGTGGTAagacggacaaaaaaatgcccacgcggc
aattggcggctacggtcgaaaagttgTATTGCAGTCATGTGAATCCGTAT
CTGTCGAGAAAGCGATTTTCCACAGTTTCCAAAGCCAGTCAGGTTAAAGA
GAAATGGTTTTTCCAAATGACGTCAACCTATTCTTCTCAACATTCAGGAA
CTTTGAAATATGTTCAATAAACTGCATTTAATGTAAAAAGAATGCTAAAT
TTTAGGATGCGATTTGTTACATTTCATTTCAATGGAATGCACACAGACAA
GGGAAATAATAGACCATACCCAAGTGACGTCAAACCATTCAGGAACTTTG
CAaatgttttcaatttcattttcataaatATGACATCGCTTTTTTGTGTA
GTTTTCAAAGACAAGGATATTCAGCTTTTCTTGGATTTCTATGgtatttc
agtcccattcacaaattttgtaaaagttttaaaaaaggaAGAGTCCCACA
ACGTAGGGTCTATTTTTTCGGACCTCAGCAGCACACTCCACTCGGTCGAC
AAGGATAATACCCCCGGAAGTTCCAAGTGACGTGTTTCTAAAGGAGATGG
ATTCTCCATAATGGAGGTAAAAGAAAAGTACCCACTAGCAGCAAATCCCC
ACACCCCTTTTTGTCTAAGTCCCCCCCCATACCCGGGCCTGGAACACACC
GTAAAATCAATATCTATTCTATTTAACACATAAATCGTCAAACAATGACG
ATAAAAGGACAGAGACTCTTCTCTCTGTTATACAGTTGCTAAAGCCATCG
TCATGACACAAAACCCGGTAAGATCGGATTCAACAAACGGGTTTCTCTCT
CCAGGTTTCCGAGTTAAGACATTTCTTGTTGCTTAGAGAAACCCAAAATT
GTCAAGTCAATGAAAATATGACATTAAAATAACATCcaaatataatttta
taatgatAATCCTTCAAACCACAACCTTTGTGTTTCAATTAAAATGGAGA
AGTGTTTGGCGGGTTAGAGCGCTAGTGTATTACATGGGTGAGCTTCGTAT
TAAAGACATTGAGACATTCTATCGATTGATCCCACGTGTTGTAGGGACAA
TCGGATCTTCAAACCCTCTTAACTGCATTGACATGAAAGGGGTCAGTAAT
TTGAACCTCTGGTTTATACAGCAGTAGCAATTGCTTAGGAAGCCAGATAT
GGTATAAACCCACAGGCAGAATTTGCGATGGTTTCTAAGCTAAAACAAGC
AGGGAAACCACCACTGAAAGATATCCAGCCCTAAAAAACTACCACTCCGT
AACttcaagttttcaaatatttgcgATTTCAAATTCGCGTACACACCCTA
ACTAAGAAAAAATGCCAATCGCCTACCGGCGCAGGGCCGAAAAAATCTCG
TAGGTATTATGCCAGTGGCACTTCAAGGGTTAACAACAGCAAACTGCTAT
ACGTCACGATCTAAACATGGCACTCAGAGAGCGAAGCTCATACGTAGAAA
ACTTCACGAGTGTATTGTATATACTTGTATCACATGAGCTAGTCAAAGGC
TAGAGACGAACCATCAACCTTTTTAAAGCAAGCAAATGTGGTGCCTTTAA
ATTTGCGATGCATTTCAGAAGACAGATCGAATATACcgttttcatttgtt
ttggggttttgaattttcaaattctggTGGTAAATGTTACTTCTAATCCA
GCGTTTGTAGGAAAAGCATGCAGACCGTGGGCACAACTTATGTAGGAAAA
AAGTGTCTTCAGATCCTATAGGAGATTTGAATTAACCACTTCAATATAAA
GCTTAAAGAAGGCTACGTGCAATTTATGAGTGGATTAGAATCCCTACTTT
TCTTTACATCCCAAAAAACCGTTACTATTCAGCTCTATTTCCCTTGAGGT
TTTGTTAGGCTTAAAGTAATTTTAAACAGTTCACAGgaaagtaaaagtaa
aacttAACGACTCACTATTTCTAATCTCTCATAGGTACATCTTGGTATTG
ATTGCAGTATGTCATTTCGCATTCCTCTTCAATGTAGCGGATGCTGAGCA
TGATAGACGATGTGTGTTCATCTGCAGGATGAGATTTAGTCATTGTGACC
AGAAGAAGACTATCGACGGTGCTCCTGTCGGCGGTGGACCAAAATGCGAT
AAGCCAGAATTACGGCAACAATGTGTCCAGGACTGTGGTCTGCGATTTAA
GTTAGAGAACTTCTGTCGGGGTAAAGGAAAATCCGACTCGTGGTGCCAAG
GTGTCTTCAAAGGATACttaaaagcaaaaatgaaaagtttactTTAAAAA
CTATGATATGGACACCAAATGAAATGTTTGCTAATTTTGAAAAGGGTAGT
CATTTTGGATAAGGACAGGAGAGAGGTGATTGGAGTGTATCATTTATCTT
GCATCTTGCAATGAAGGGACAATTTTTGTTGTTCTTGACGACAGATTGAC
TTCTACTTTTTATCTTTACGATAATAAAAAATGAGCTGTTGTGTTGTCAA
GAGAAGGGAAAAGAAGAAACAGATGGAAAACCAATGTATAAGTATAAGTA
TAAGTCCCAAGGGCTAGAAACGAATCTTTAacttttctcaggcaagaaaa
aatgaagcctATGCGCTGTATTTTTGACAACGGATTTAATAtagcaattc
ttttgtttttgagtaatatttttttccgaaatttagcggtaaattttagt
ttcaaacTGGCATTTGTgcaaaaaccaggcgagccgctcaaggccgcgca
actttggtaggatttgttggcttcaaatcctaccaaggagattcgcttct
aacccttcgggcttatacttcattgtggAAAACCTATACAGTTCTGTATC
AAGAAAAATGTCATAGTTTATAATATGTCGTTTAtgcttattcatgatat
tcatgacgtaatgttttctacggaaacaaccccgttttagccagtagtgg
gaaacattatacaacttttgtctagtttaaatttgccactactggctaaa
accggggtttttccgtagaaaacattacgtaatgaatatcatgaattctc
aTCAGTGCAGTGAAACATCATCAAATGTTTTCAAGAATGCCATCTCCTTA
ATTATACTAATTTTCTAATCTATGATTGTGGATATACCATTAATTAATAT
ATTGTTATTTTAAATAATTCACATTGAATTGTTAGTGTGTAAttcttttg
gaatttttgaTCAAAAAATGACCTGCGTTCATTTATTGCTTGAAGTCCAA
AGATTTGAATAGAAAAGTTTCCTGATTTCgtcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005006-exon-sc0000050-1491911889:521627..522237 | TCONS_00005006-exon-sc0000050-1491911889:521627..522237 | Clytia hemisphaerica | exon |
| TCONS_00005006-exon-sc0000050-1510915933:521627..522237 | TCONS_00005006-exon-sc0000050-1510915933:521627..522237 | Clytia hemisphaerica | exon |
| TCONS_00005006-exon-sc0000050-1575043694:521627..522237 | TCONS_00005006-exon-sc0000050-1575043694:521627..522237 | Clytia hemisphaerica | exon |
| TCONS_00005006-exon-sc0000050-1491911889:526811..528109 | TCONS_00005006-exon-sc0000050-1491911889:526811..528109 | Clytia hemisphaerica | exon |
| TCONS_00005006-exon-sc0000050-1510915933:526811..528109 | TCONS_00005006-exon-sc0000050-1510915933:526811..528109 | Clytia hemisphaerica | exon |
| TCONS_00005006-exon-sc0000050-1575043694:526811..528109 | TCONS_00005006-exon-sc0000050-1575043694:526811..528109 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:521627..528109 + |
Blast
The following BLAST results are available for this feature:
|
