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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005004 ID=TCONS_00005004|Name=TCONS_00005004|organism=Clytia hemisphaerica|type=transcript|length=2188bp
cgccgaccgaccgaccctctttttgggGTAGCTTgacccgtaaaacaaca
aattaaatttgtctcgcctaatatcataataatatatgaCACGGGTTAAA
TGaacattatatttatttttaattaattgtgATGGATATAGTGTAAAAGA
TGGTATTATTTACAGTTTTTTAATCATTCCAATAAATATAAAGatcagtg
gcgtggtggcaaGGGGGGCCAGGTGGGCCAGGCCCCAccagcggagccct
tttgagaaggggcgccAAGAAGGATTTTCCAGACGCCCCTATCAAAAGAT
TGGCAACTGAAAAGCCAAAAATCGCGCCCCTTATCACcttaaaatttctt
tggctcgcttcgctcgcacactctTCTACTAAATGTATATAGAGAGAGGG
CaccgaaaacaaaaaaatctccaaaaaggGCGCCAAATTCTGCTTGGCCa
ccccagaaaaattttcccaccacgccactgaaAGATTCTTGATAATATGG
GCCAATTCAAgttcgaaatggatcatgggtaatcagagCCGATTCCACAC
TGGGCAGGTGAAAAAACTACAAAATGTTTAACCAATAGGAAGAGACCATT
GGTCCTGAttccctttttttcttttctaccgTGAAATTCAATTCTTGATA
ttgatgacgtaatgttttatatggAAACACACAAAAACGCGTATGACAAC
AGTTTCATTGTTCtaaatcaaaatgtttttcGGGTGTTcggtataaaaga
ttacgtcatgaataacAAGAAGTGACCTGTAGCGAATAGCGTCTAATAAA
GATGGCCAAGTACTGCAGTTGgattctctttaactcgaacctgtATATAA
CTCGAACGTCTCCTTCACTCGAGAAAAAGTTTTATCATCCCTTCTGTTAA
CCAAGCATTGTGTACAccttccataactcgaaatttccttaactcgaaca
aaattGTGTTCCcagtgcgtgttcgagttatggagactccactgtagtaA
CCTAGtgattactctcgggtacctaatagtcgGGAGGGTTGGAAtaaggg
ggggttggaaaaatctcaaaacttaataagcagggggggggtcggaaTAG
AAATTATGGGTGGTAAATCTTTttaaaggaggctaatacaacAAAAGAGg
ggactttcaaaaatattttaataagcgggggggtttggaataacaatgtc
ctgggtggaaaattttcgaataaTCAGCGGGGgtgacggctattaggtac
ccccAGAGTAAAACGACGAATAGCTGTGTTTTTAGGAATCAATTTTATGT
TTGATACCCAATTTGATAGCTCGTATCATCATTAAATGTGTGTCTGTAAA
ATTACTATTCTGAAGTTCCGGCATCAACGGTTGTAATTCTCTGGCTGGTT
CCAATAAGGTTTTTCGAGGAGTTGGTAAAAGTGTTTTACGTTTCTGGTAA
CTTTGGTGTAATAAATGGTCCTTTATTGATAATTGAGATTCTAAGATATG
GTGATTGTTGTGGTATGGTAATAATGTCTTTGGTTGCTTCCAGTATGGTT
TTCTTTTGttgatcaattttttaaaagtttgaatCTTTTCAGTGTAAGTG
CTCGTAGATTCTCTTTGGTTCTGTTGTGAGTATCTTGGATGATATAATGA
GTTTGATGAATGAATCTTTACGGAGACGATTGGTGAGTGTGTTGTACTGT
TTGTTAAAATAGTATGTCCAGTTCTAGAATCTAATAACGTCCGACCTTTT
GAATTCCTGTTATAATTTTGATGTGAGTATGTTGTGAGTTTGGAAGTTTG
GAGTCTTGTTGACGTTGAGTTAGTGCATTGTTTATAGTCCATTGTTTGAA
TGGCGCTTGTTTCTTGATTTTGTATAGCGTTTATTGAAGATGGAAAAGAA
ATACAGTTTTTCACTATACGGTTCAATGGTTGTTGTTTCTCATTTGAAGG
AGACTTCTTGGTGGCTAAAGACCAAGGATCTGTTACATTCAGGTTTGAAT
CTTTATCATTGCCAATCTCCATGGTGACACCAAAAATACGAGATTGACAG
ACAAAATATGCCTTCCAATGGAAGTAAAATATTGTATCTTCAATTGTATC
AGTTCTAGTGTATCCTCAAGAAACAAACTCTCAATTTTTAATCCATAGAA
ACTTCCTAAAGGAAAGTAAGTAACTTTTATCTTTATCc Run BLAST on NCBI transcript from alignment at sc0000050:478067..480456+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005004 ID=TCONS_00005004|Name=TCONS_00005004|organism=Clytia hemisphaerica|type=transcript|length=2390bp|location=Sequence derived from alignment at sc0000050:478067..480456+ (Clytia hemisphaerica)
cgccgaccgaccgaccctctttttgggGTAGCTTgacccgtaaaacaaca
aattaaatttgtctcgcctaatatcataataatatatgaCACGGGTTAAA
TGaacattatatttatttttaattaattgtgATGGATATAGTGTAAAAGA
TGGTATTATTTACAGTTTTTTAATCATTCCAATAAATATAAAGatcagtg
gcgtggtggcaaGGGGGGCCAGGTGGGCCAGGCCCCAccagcggagccct
tttgagaaggggcgccAAGAAGGATTTTCCAGACGCCCCTATCAAAAGAT
TGGCAACTGAAAAGCCAAAAATCGCGCCCCTTATCACcttaaaatttctt
tggctcgcttcgctcgcacactctTCTACTAAATGTATATAGAGAGAGGG
CaccgaaaacaaaaaaatctccaaaaaggGCGCCAAATTCTGCTTGGCCa
ccccagaaaaattttcccaccacgccactgaaAGATTCTTGATAATATGG
GCCAATTCAAgttcgaaatggatcatgggtaatcagagCCGATTCCACAC
TGGGCAGGTGAAAAAACTACAAAATGTTTAACCAATAGGAAGAGACCATT
GGTCCTGAttccctttttttcttttctaccgTGAAATTCAATTCTTGATA
ttgatgacgtaatgttttatatggAAACACACAAAAACGCGTATGACAAC
AGTTTCATTGTTCtaaatcaaaatgtttttcGGGTGTTcggtataaaaga
ttacgtcatgaataacAAGAAGTGACCTGTAGCGAATAGCGTCTAATAAA
GATGGCCAAGTACTGCAGTTGgattctctttaactcgaacctgtATATAA
CTCGAACGTCTCCTTCACTCGAGAAAAAGTTTTATCATCCCTTCTGTTAA
CCAAGCATTGTGTACAccttccataactcgaaatttccttaactcgaaca
aaattGTGTTCCcagtgcgtgttcgagttatggagactccactgtagtaA
CCTAGtgattactctcgggtacctaatagtcgGGAGGGTTGGAAtaaggg
ggggttggaaaaatctcaaaacttaataagcagggggggggtcggaaTAG
AAATTATGGGTGGTAAATCTTTttaaaggaggctaatacaacAAAAGAGg
ggactttcaaaaatattttaataagcgggggggtttggaataacaatgtc
ctgggtggaaaattttcgaataaTCAGCGGGGgtgacggctattaggtac
ccccAGAGTAAAACGACGAATAGCTGTGTTTTTAGGAATCAATTTTATGT
TTGATACCCAATTTGATAGCTCGTATCATCATTAAATGTGTGTCTGTAAA
ATTACTATTCTGAAGTTCCGGCATCAACGGTTGTAATTCTCTGGCTGGTT
CCAATAAGGTTTTTCGAGGAGTTGGTAAAAGTGTTTTACGTTTCTGGTAA
CTTTGGTGTAATAAATGGTCCTTTATTGATAATTGAGATTCTAAGATATG
GTGATTGTTGTGGTATGGTAATAATGTCTTTGGTTGCTTCCAGTATGGTT
TTCTTTTGttgatcaattttttaaaagtttgaatCTTTTCAGTGTAAGTG
CTCGTAGATTCTCTTTGGTTCTGTTGTGAGTATCTTGGATGATGTAATGA
GTTTGATGAATGAACCTTTACGGAGACGATTGGTGAATGCGTTGTACTGT
TTGTTAAAATAGTATGTCCAGTTTTAGAATCTAATAACGTCCGAATTTTT
GAGTAACGGTTATTATTTCCATGTGAGTATGTTGTGGATTTGGAAGCTTG
GAGACTTGTTGACGTTGAGTTAGTGCATTGTNCATCTTGGATGATATAAT
GAGTTTGATGAATGAATCTTTACGGAGACGATTGGTGAGTGTGTTGTACT
GTTTGTTAAAATAGTATGTCCAGTTCTAGAATCTAATAACGTCCGACCTT
TTGAATTCCTGTTATAATTTTGATGTGAGTATGTTGTGAGTTTGGAAGTT
TGGAGTCTTGTTGACGTTGAGTTAGTGCATTGTTTATAGTCCATTGTTTG
AATGGCGCTTGTTTCTTGATTTTGTATAGCGTTTATTGAAGATGGAAAAG
AAATACAGTTTTTCACTATACGGTTCAATGGTTGTTGTTTCTCATTTGAA
GGAGACTTCTTGGTGGCTAAAGACCAAGGATCTGTTACATTCAGGTTTGA
ATCTTTATCATTGCCAATCTCCATGGTGACACCAAAAATACGAGATTGAC
AGACAAAATATGCCTTCCAATGGAAGTAAAATATTGTATCTTCAATTGTA
TCAGTTCTAGTGTATCCTCAAGAAACAAACTCTCAATTTTTAATCCATAG
AAACTTCCTAAAGGAAAGTAAGTAACTTTTATCTTTATCc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005004-exon-sc0000050-1491911889:478067..479697 | TCONS_00005004-exon-sc0000050-1491911889:478067..479697 | Clytia hemisphaerica | exon |
| TCONS_00005004-exon-sc0000050-1510915933:478067..479697 | TCONS_00005004-exon-sc0000050-1510915933:478067..479697 | Clytia hemisphaerica | exon |
| TCONS_00005004-exon-sc0000050-1575043694:478067..479697 | TCONS_00005004-exon-sc0000050-1575043694:478067..479697 | Clytia hemisphaerica | exon |
| TCONS_00005004-exon-sc0000050-1491911889:479900..480456 | TCONS_00005004-exon-sc0000050-1491911889:479900..480456 | Clytia hemisphaerica | exon |
| TCONS_00005004-exon-sc0000050-1510915933:479900..480456 | TCONS_00005004-exon-sc0000050-1510915933:479900..480456 | Clytia hemisphaerica | exon |
| TCONS_00005004-exon-sc0000050-1575043694:479900..480456 | TCONS_00005004-exon-sc0000050-1575043694:479900..480456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:478067..480456 + |
Blast
The following BLAST results are available for this feature:
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