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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004962 ID=TCONS_00004962|Name=TCONS_00004962|organism=Clytia hemisphaerica|type=transcript|length=2073bpRun BLAST on NCBI protein sequence of TCONS_00004962-protein >TCONS_00004962-protein ID=TCONS_00004962-protein|Name=TCONS_00004962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp MSESDHDYALVVMLNESESTGDRLTFTVQKVNQADLDPEQTRVAIIENEGRun BLAST on NCBI transcript from alignment at sc0000049:514837..516909 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004962 ID=TCONS_00004962|Name=TCONS_00004962|organism=Clytia hemisphaerica|type=transcript|length=2073bp|location=Sequence derived from alignment at sc0000049:514837..516909 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:514837..516909 >TCONS_00004962 ID=TCONS_00004962|Name=TCONS_00004962|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000049:514837..516909 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004962 vs. Swiss-Prot (Human)
Match: ZNF45 (Zinc finger protein 45 OS=Homo sapiens GN=ZNF45 PE=1 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 7.540e-77 Identity = 132/313 (42.17%), Postives = 180/313 (57.51%), Query Frame = -2
Query: 459 KLFKCNACDSTYTTKYSLNIHARIHTGDKPFKCTECDASFIRRSYLKYHMQNHTGVKLYQCTMCEMSYTSGSSLKNHLRSHTGEKPYKCTDCGEAFPRKAYLNHHQIIAHQCSMPYKCDKCDKVYKTKSSLRMHAKTHITPDENHPNQCKDCKKTFTRQHDLKRHVLSVHEKASHKCDICGTCYTAKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEVCGTGFTVMSSLTQHMLRHNGEKPFACDVCDAKFFRQRSVVE-HRRVHTGEKPYSCQLCDKKFAWRCDMRRHKKFHQNE 1394
K +KCNAC +++ LNIH RIHTG+KP+KC EC F S+L+ H +HTG K Y+C C + S+L +H R HTGEKPY+C CG+ F R + N H H PYKC++C K + S+L H + H P +C C K F+R DL H + +KC+ CG ++ +SL +H R HTGEKP+ C C F+ + L+ H+ H +KP CE CG GF S+ H H GEKP+ CDVC K FRQRS ++ H+RVHTGE+PY C+ C K F+W ++ H++ H E
Sbjct: 330 KPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIH-FRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEK---PYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVC-GKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSSYLQAHQRVHTGE 637 HSP 2 Score: 213.001 bits (541), Expect = 4.956e-59 Identity = 112/312 (35.90%), Postives = 169/312 (54.17%), Query Frame = -2
Query: 459 KLFKCNACDSTYTTKYSLNIHARIHTGDKPFKCTECDASFIRRSYLKYHMQNHTGVKLYQCTMCEMSYTSGSSLKNHLRSHTGEKPYKCTDCGEAFPRKAYLNHHQIIAHQCSMPYKCDKCDKVYKTKSSLRMHAKTHITPDENHPNQCKDCKKTFTRQHDLKRHVLSVHEKASHKCDICGTCYTAKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEVCGTGFTVMSSLTQHMLRHNGEKPFACDVCDAKFFRQRSVVEHRRVHTGEKPYSCQLCDKKFAWRCDMRRHKKFHQNE 1394
K +K C +++ L I+ R H G+KP+KC +CD +F R S L+ H + H+ K Y S++ S L +H R TGE PYK +CG + ++ +I H PYKC++C + +S L++H K H P +C++C K+F+ + L+ H + +KC+ CG ++ + L IH R HTGEKP+ C+ C F+ ++L+ H+++H +KP CE CG GF S+L H H GEKP+ CD C F R H RVHTGEKPY C+ C K F+ ++ H++ H E
Sbjct: 162 KPYKGEHCVKSFSWSSHLQINQRAHAGEKPYKCEKCDNAFRRFSSLQAHQRVHSRAKSYTNDASYRSFSQRSHLPHHQRVPTGENPYKYEECGRNVGKSSHCQA-PLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKK---PYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGE 469 HSP 3 Score: 211.075 bits (536), Expect = 2.434e-58 Identity = 106/282 (37.59%), Postives = 151/282 (53.55%), Query Frame = -2
Query: 549 KLFKCNACDSTYTTKYSLNIHARIHTGDKPFKCTECDASFIRRSYLKYHMQNHTGVKLYQCTMCEMSYTSGSSLKNHLRSHTGEKPYKCTDCGEAFPRKAYLNHHQIIAHQCSMPYKCDKCDKVYKTKSSLRMHAKTHITPDENHPNQCKDCKKTFTRQHDLKRHVLSVHEKASHKCDICGTCYTAKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEVCGTGFTVMSSLTQHMLRHNGEKPFACDVCDAKFFRQRSVVEHRRVHT 1394
K +KC C + +L H R HTG+KP++C C F R S H + HTG K Y+C C ++ S+L H R HTGEKPYKC CG+ F R + LN H I H PYKC++C K + SSL++H + H P QC +C K F+ L+ H + ++C+ CG + ++ + H HTGEKP+ CD+C +F + +YL+ H+ H ++P CE CG F+ S L H H GEKP+ C+ C F S++ H+RVH
Sbjct: 386 KPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRI-HTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEK---PYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVCGKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSSYLQAHQRVHTGEKPYKCEECGKGFSWSSSLIIHQRVHA 663 HSP 4 Score: 91.6633 bits (226), Expect = 3.790e-19 Identity = 53/179 (29.61%), Postives = 84/179 (46.93%), Query Frame = -2
Query: 459 LKRHVLSVHEKASHKCDICGTCYTAKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEVCGTGFTVMSSLTQH----------------------------MLRHNGEKPFACDVCDAKFFRQRSVVEHRRVHTGEKPYSCQLCDKKFAWRCDMRRHKKFHQNE 911
L+ H + EK +K + C ++ + L I+ R+H GEKP+ C+ CD F R + L+ H+ H K T + F+ S L H ++ H GEKP+ C+ C F ++ + H +VHTG+KPY C+ C K F+WR ++ H++ H E
Sbjct: 152 LQVHRVHTGEKP-YKGEHCVKSFSWSSHLQINQRAHAGEKPYKCEKCDNAFRRFSSLQAHQRVHSRAKSYTNDASYRSFSQRSHLPHHQRVPTGENPYKYEECGRNVGKSSHCQAPLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRSRLQAHERIHTGE 329 The following BLAST results are available for this feature:
BLAST of TCONS_00004962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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