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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00004962-protein ID=TCONS_00004962-protein|Name=TCONS_00004962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp MSESDHDYALVVMLNESESTGDRLTFTVQKVNQADLDPEQTRVAIIENEG VQTKIALPTSLVAPLPEGDEDTTTYLQNVVLQGLESVAKVKPDCIESLEE SSNNINIVLQENEEPSEVEKSAEDKDGENGQNNDENDDGKENNTESYIFE DLSVIQNMLSSLKDKGSKEDATYPVEIEGEPVPVCIQLSEEAEIKSEDDE TIEKMICEEAEPKFTKLFKCNACDSTYTTKYSLNIHARIHTGDKPFKCTE CDASFIRRSYLKYHMQNHTGVKLYQCTMCEMSYTSGSSLKNHLRSHTGEK PYKCTDCGEAFPRKAYLNHHQIIAHQCSMPYKCDKCDKVYKTKSSLRMHA KTHITPDENHPNQCKDCKKTFTRQHDLKRHVLSVHEKASHKCDICGTCYT AKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEV CGTGFTVMSSLTQHMLRHNGEKPFACDVCDAKFFRQRSVVEHRRVHTGEK PYSCQLCDKKFAWRCDMRRHKKFHQNEDMNSKKEDVNENNESAMDEDESP VQSDEEKIIQDMQEQVEASIEINFTDSTQEEDEDDRLECDEQDESVVEET QIFAALDPNEKEQTPTITDTEAD Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 526..546 |
None | No IPR available | GENE3D | 2.30.30.380 | | coord: 265..280 e-value: 5.3E-6 score: 26.0 coord: 229..247 e-value: 3.4E-10 score: 39.4 |
None | No IPR available | GENE3D | 3.30.160.60 | | coord: 371..387 e-value: 8.5E-5 score: 22.0 |
None | No IPR available | GENE3D | 3.30.160.60 | | coord: 412..428 e-value: 1.2E-12 score: 47.2 coord: 187..228 e-value: 1.0E-6 score: 28.3 coord: 295..321 e-value: 1.2E-13 score: 50.4 |
None | No IPR available | GENE3D | 3.30.160.60 | | coord: 344..370 e-value: 6.0E-11 score: 42.0 coord: 457..480 e-value: 4.5E-14 score: 52.1 |
None | No IPR available | GENE3D | 3.30.160.60 | | coord: 429..456 e-value: 1.9E-16 score: 59.4 |
None | No IPR available | GENE3D | 3.30.160.60 | | coord: 322..343 e-value: 2.0E-6 score: 27.2 |
None | No IPR available | GENE3D | 2.20.25.10 | | coord: 495..509 e-value: 5.7E-6 score: 25.8 |
None | No IPR available | GENE3D | 3.30.160.60 | | coord: 510..538 e-value: 6.2E-6 score: 25.6 |
None | No IPR available | PFAM | PF12874 | zf-met | coord: 418..436 e-value: 0.0039 score: 17.4 coord: 274..297 e-value: 3.7E-4 score: 20.7 |
None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 390..412 e-value: 3.6E-4 score: 20.7 coord: 331..353 e-value: 4.3E-5 score: 23.6 coord: 447..468 e-value: 0.0025 score: 18.1 coord: 218..240 e-value: 0.0075 score: 16.6 coord: 246..268 e-value: 2.1E-4 score: 21.5 coord: 363..385 e-value: 1.0E-4 score: 22.4 coord: 302..325 e-value: 4.1E-5 score: 23.7 |
None | No IPR available | GENE3D | 3.30.160.60 | | coord: 481..494 e-value: 1.7E-10 score: 40.2 coord: 281..294 e-value: 1.1E-10 score: 40.7 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 105..143 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 526..623 |
IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 474..496 e-value: 0.025 score: 23.7 coord: 446..468 e-value: 0.014 score: 24.5 coord: 418..440 e-value: 0.079 score: 22.1 coord: 502..524 e-value: 0.018 score: 24.2 coord: 390..412 e-value: 0.0054 score: 26.0 coord: 302..325 e-value: 0.006 score: 25.8 coord: 218..240 e-value: 0.014 score: 24.6 coord: 246..268 e-value: 8.1E-4 score: 28.7 coord: 331..353 e-value: 2.7E-4 score: 30.3 coord: 274..296 e-value: 0.0013 score: 28.0 coord: 362..385 e-value: 0.011 score: 24.9 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 420..440 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 304..325 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 392..412 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 504..524 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 276..296 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 333..353 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 476..496 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 248..268 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 448..468 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 220..240 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 390..417 score: 14.627 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 274..301 score: 15.189 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 502..529 score: 11.863 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 331..358 score: 11.697 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 362..390 score: 10.159 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 418..445 score: 12.653 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 474..501 score: 14.586 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 246..273 score: 12.965 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 446..473 score: 13.713 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 218..245 score: 14.274 |
IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 302..330 score: 12.424 |
IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 468..520 |
IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 254..311 |
IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 330..381 |
IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 399..455 |
IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 216..268 |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 248..264 e-value: 4.6E-12 score: 45.5 |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 388..411 e-value: 7.1E-11 score: 41.5 |
Blast
BLAST of TCONS_00004962-protein vs. Swiss-Prot (Human)
Match: ZNF45 (Zinc finger protein 45 OS=Homo sapiens GN=ZNF45 PE=1 SV=2) HSP 1 Score: 263.077 bits (671), Expect = 9.771e-79 Identity = 132/313 (42.17%), Postives = 180/313 (57.51%), Query Frame = 0
Query: 216 KLFKCNACDSTYTTKYSLNIHARIHTGDKPFKCTECDASFIRRSYLKYHMQNHTGVKLYQCTMCEMSYTSGSSLKNHLRSHTGEKPYKCTDCGEAFPRKAYLNHHQIIAHQCSMPYKCDKCDKVYKTKSSLRMHAKTHITPDENHPNQCKDCKKTFTRQHDLKRHVLSVHEKASHKCDICGTCYTAKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEVCGTGFTVMSSLTQHMLRHNGEKPFACDVCDAKFFRQRSVVE-HRRVHTGEKPYSCQLCDKKFAWRCDMRRHKKFHQNE 527
K +KCNAC +++ LNIH RIHTG+KP+KC EC F S+L+ H +HTG K Y+C C + S+L +H R HTGEKPY+C CG+ F R + N H H PYKC++C K + S+L H + H P +C C K F+R DL H + +KC+ CG ++ +SL +H R HTGEKP+ C C F+ + L+ H+ H +KP CE CG GF S+ H H GEKP+ CDVC K FRQRS ++ H+RVHTGE+PY C+ C K F+W ++ H++ H E
Sbjct: 330 KPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIH-FRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEK---PYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVC-GKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSSYLQAHQRVHTGE 637 HSP 2 Score: 212.231 bits (539), Expect = 5.318e-60 Identity = 112/312 (35.90%), Postives = 169/312 (54.17%), Query Frame = 0
Query: 216 KLFKCNACDSTYTTKYSLNIHARIHTGDKPFKCTECDASFIRRSYLKYHMQNHTGVKLYQCTMCEMSYTSGSSLKNHLRSHTGEKPYKCTDCGEAFPRKAYLNHHQIIAHQCSMPYKCDKCDKVYKTKSSLRMHAKTHITPDENHPNQCKDCKKTFTRQHDLKRHVLSVHEKASHKCDICGTCYTAKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEVCGTGFTVMSSLTQHMLRHNGEKPFACDVCDAKFFRQRSVVEHRRVHTGEKPYSCQLCDKKFAWRCDMRRHKKFHQNE 527
K +K C +++ L I+ R H G+KP+KC +CD +F R S L+ H + H+ K Y S++ S L +H R TGE PYK +CG + ++ +I H PYKC++C + +S L++H K H P +C++C K+F+ + L+ H + +KC+ CG ++ + L IH R HTGEKP+ C+ C F+ ++L+ H+++H +KP CE CG GF S+L H H GEKP+ CD C F R H RVHTGEKPY C+ C K F+ ++ H++ H E
Sbjct: 162 KPYKGEHCVKSFSWSSHLQINQRAHAGEKPYKCEKCDNAFRRFSSLQAHQRVHSRAKSYTNDASYRSFSQRSHLPHHQRVPTGENPYKYEECGRNVGKSSHCQA-PLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKK---PYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGE 469 HSP 3 Score: 211.075 bits (536), Expect = 1.591e-59 Identity = 106/282 (37.59%), Postives = 151/282 (53.55%), Query Frame = 0
Query: 216 KLFKCNACDSTYTTKYSLNIHARIHTGDKPFKCTECDASFIRRSYLKYHMQNHTGVKLYQCTMCEMSYTSGSSLKNHLRSHTGEKPYKCTDCGEAFPRKAYLNHHQIIAHQCSMPYKCDKCDKVYKTKSSLRMHAKTHITPDENHPNQCKDCKKTFTRQHDLKRHVLSVHEKASHKCDICGTCYTAKASLVIHMRSHTGEKPFACDLCDAKFARNTYLKTHKLTHQAKKPLTCEVCGTGFTVMSSLTQHMLRHNGEKPFACDVCDAKFFRQRSVVEHRRVHT 497
K +KC C + +L H R HTG+KP++C C F R S H + HTG K Y+C C ++ S+L H R HTGEKPYKC CG+ F R + LN H I H PYKC++C K + SSL++H + H P QC +C K F+ L+ H + ++C+ CG + ++ + H HTGEKP+ CD+C +F + +YL+ H+ H ++P CE CG F+ S L H H GEKP+ C+ C F S++ H+RVH
Sbjct: 386 KPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRI-HTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEK---PYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVCGKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSSYLQAHQRVHTGEKPYKCEECGKGFSWSSSLIIHQRVHA 663
The following BLAST results are available for this feature:
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