TCONS_00004938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004938
Unique NameTCONS_00004938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004938 ID=TCONS_00004938|Name=TCONS_00004938|organism=Clytia hemisphaerica|type=transcript|length=1577bp
aaattttcatgtttATTAATGCGTGTTTGACAAGGACTTGATAGTTTTCT
TGCATCATTGTTATCTGAGCTGAACAACAATAttgacattttttgcaata
ataCGAGCCAAAAATATGGATGAAAATAACATGACTGAGCAGAACATCCA
ACCTGATGATTATTTGCTTGGTGAAGAGAAGAAGGGAAAAATGGAGGGGA
AAGAAGTCACTGCTGCAACTGAACGGAGATATGGCTGGAGATCATTTCGA
CCCGATTGTTTACAATTTCTTAACCGTCCAGTCTTCTTTTTGGCTAGCCT
GTGCCTTATTGTCTTTGGACAAGGGCTAGCATGTACGGGAATTAATAATA
CAATGATCACAAGCATCGAAAAACGCTATGGATTTAAAACAACGCAGATT
GGGATTTTTTCGACACTTTTTCACACATCTGTCGGGACGTTTGTCAGCAT
TGTCTGATATTTTGGACATCGTCATCGGCCTTTTACTTTAGGATTAGGAT
GTCTTGCAATTGGACTGGGACTTTTTATCATCACAATTCCACATTATATG
GTGTCAAAATATCAAGCTGGCATTACCTTACTGTCAGATACATGTCGATT
AAACATGAGCAGTACTTCAATAGACACTTGTGAAGAACCAAGTGAAAATG
GAAATcaatattttggtatttttgcaATAGGTTATATCTGTATGGGACTT
GGCGTTACGCCCTTATATAGTCTGGGATACGCCCATTGTGAAGATATTGT
AGGGCGTGGCAAGAGTAGTCTCTATTTGAGCATTATGAGTGCGATCGCAG
CGTTTGGTCCAGCTGCTGGCTTCACAATTGCAAACCCCATTCTCAATGTT
TTCGTTGACTTAAAACAGCCTGAGAATTCCCATCTGACACCAGAAAACAG
GAATTGGGTCGGTGCGTGGTGGCTTGGTTACCTCGTTGGTGCTGGCATCG
TTATTCTTGCTTCAATACCTATGTTAGGATTTCCCTCGCTCTTTGATGAT
ACGGAGCGCGTTCGaaaggagaaaaacaaatttgctgACACAAACAAAGA
AGATCACGATCTCAACCACGATTTGAAGTCATTATGGCCGTCGACGAAAA
GCTTGTTCAAGAATGTTCCCTTCATTTTGATCTGTTTGGGAAACGCAATG
GAGAGTTTTCTGATTGGtggttttgcaatttttcttccAAAGTTCATTGA
GACACAGTTTCATCAGACAGCAGCAAAGTCTGCTCTCCTCACGGGGGTCG
TTATCATTCCAGGAGCGGCAGTTGGCATGTTTACTGGTGCATTTTTTGTG
AAGAAATATAAATGGGATTGTAAAAGAATCATTCGCAATGCATTTATTGT
GTCCCTCCTTTCAACGATTGGCATGTCCAGTGTTTTGATTGGCTGTCAAC
AAAGAACGGTGGTCGGTGGTGACGTGCTTTACGCAAACCAATCAACAATC
TCGTTACAATCAGGGTGTAATGAATATTGTCAATGTTCCACAAGATATTA
TAAACCAGTTTGTTCAGTGGTCGACCAACAGACATATTTTTCACCTTGCC
ACGCTGGATGCTCCGTTAACCATACTG
Run BLAST on NCBI

protein sequence of TCONS_00004938-protein

>TCONS_00004938-protein ID=TCONS_00004938-protein|Name=TCONS_00004938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MVSKYQAGITLLSDTCRLNMSSTSIDTCEEPSENGNQYFGIFAIGYICMG
LGVTPLYSLGYAHCEDIVGRGKSSLYLSIMSAIAAFGPAAGFTIANPILN
VFVDLKQPENSHLTPENRNWVGAWWLGYLVGAGIVILASIPMLGFPSLFD
DTERVRKEKNKFADTNKEDHDLNHDLKSLWPSTKSLFKNVPFILICLGNA
MESFLIGGFAIFLPKFIETQFHQTAAKSALLTGVVIIPGAAVGMFTGAFF
VKKYKWDCKRIIRNAFIVSLLSTIGMSSVLIGCQQRTVVGGDVLYANQST
ISLQSGCNEYCQCSTRYYKPVCSVVDQQTYFSPCHAGCSVNHT
Run BLAST on NCBI

transcript from alignment at sc0000049:716815..721647-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004938 ID=TCONS_00004938|Name=TCONS_00004938|organism=Clytia hemisphaerica|type=transcript|length=4833bp|location=Sequence derived from alignment at sc0000049:716815..721647- (Clytia hemisphaerica)
AAATTTTCATGTTTATTAATGCGTGTTTGACAAGGACTTGATAGTTTTCT
TGCATCATTGTTATCTGAGCTGAACAACAATATTGACATTTTTTGCAATA
ATACGAGCCAAAAATATGGATGAAAATAACATGACTGAGCAGAACATCCA
ACCTGATGATTATTTGCTTGGTGAAGAGAAGAAGGGAAAAATGGAGGGGA
AAGAAGTCACTGCTGCAACTGAACGGAGATATGGCTGGAGATCATTTCGA
CCCGATTGTTTACAATTTCTTAACCGTCCAGTCTTCTTTTTGGCTAGCCT
GTGCCTTATTGTCTTTGGACAAGGGCTAGCATGTACGGGAATTAATAATA
CAATGATCACAAGCATCGAAAAACGCTATGGATTTAAAACAACGCAGATT
GGGATTTTTTCGACACTTTTTCACACATCTGTCGGGACGTTTGTCAGCAT
TGTCTGATATTTTGGACATCGTCATCGGCCTTTTACTTTAGGATTAGGAT
GTCTTGCAATTGGACTGGGACTTTTTATCATCACAATTCCACATTATATG
GTGTCAAAATATCAAGCTGGCATTACCTTACTGTCAGATACATGTCGATT
AAACATGAGCAGTACTTCAATAGACACTTGTGAAGAACCAAGTGAAAATG
GAAATCAATATTTTGGTATTTTTGCAATAGGTTATATCTGTATGGGACTT
GGCGTTACGCCCTTATATAGTCTGGGATACGCCCATTGTGAAGATATTGT
AGGGCGTGGCAAGAGTAGTCTCTATTTGAGCATTATGAGTGCGATCGCAG
CGTTTGGTCCAGCTGCTGGCTTCACAATTGCAAACCCCATTCTCAATGTT
TTCGTTGACTTAAAACAGGTGAGGTTTGACATTCTTGCCACGTCAATTCT
TGATAGAGCCAACGGCCGTTTAATGTATAATTTTTCGCGTTATAAAAAAA
GTTCATGTTTTTATAACTAGAGATAACGAGGTTTCAACATTTTTAAAACG
TGGACCTACCTATTCTCACCCAGATGCAGTAGGATTTTTCCAGCCAGTGG
GGGTAAAATAACACACTGAAACTCGATGGGGGGGAGTATTCTCATGTTTT
TTATTGCTGAGAAATTCGAATCCCATTGTCAAGTCAAAAAAATCAACGCG
GTAGATAGAGGTTCCACCGGGTCTTTGAGAAAGGGATGTCCTATCCTAGC
TGTGATGTTCTGATCAGACTTTGTGACATCATATCACAGCATACCCTCCC
GATAGATTTTCCTTTTAACAAAAGTAAATCTTAAGTTTCCTGTCTCTGTC
TTTTTAGCCTGAGAATTCCCATCTGACACCAGAAAACAGGAATTGGGTCG
GTGCGTGGTGGCTTGGTTACCTCGTTGGTGCTGGCATCGTTATTCTTGCT
TCAATACCTATGTTAGGATTTCCCTCGCTCTTTGATGATACGGAGCGCGT
TCGAAAGGAGAAAAACAAATTTGCTGACACAAACAAAGAAGATCACGATC
TCAACCACGATTTGAAGTCATTATGGCCGTCGACGAAAAGCTTGTTCAAG
AATGTTCCCTTCATTTTGATCTGTTTGGGAAACGCAATGGAGAGTTTTCT
GATTGGTGGTTTTGCAATTTTTCTTCCAAAGTTCATTGAGACACAGTTTC
ATCAGACAGCAGCAAAGTCTGCTCTCCTCACGGGGGTCGTTATCATTCCA
GGTAAGTTACACGTGAGGTCTTTTGATCAGTATCCACTTTGCTGAACTCA
CAACCCATCTCTATTTTCTTTGCGTCTTTTCCACATTACTTATATCTTTG
TCAATGCGTAACTATGTTTTTGTTGCTTTCAATTCACAATTTATGTCAAT
CCTACAAATTCAGTTTAAGCTTAGCTTTACAGTTTCAGTTTCATGTTAAT
ACATTTTTGGTTCTGTGCATCAGTTTGGTTCTACCTTACCGTCGTTCTTT
GTTAAAGCCCTAAAAAAACTCTTCTCCAATAAAGAATGCATATTTCTTGA
TATTTTGTATTACTTTCTAACAGTTCTGGCTTTTTGCAATAGAGTTTTTA
AGTAAATTGTGAAATTCACTTATTCTTCAGGAGCGGCAGTTGGCATGTTT
ACTGGTGCATTTTTTGTGAAGAAATATAAATGGGATTGTAAAAGAATCAT
TCGCAATGCATTTATTGTGTCCCTCCTTTCAACGATTGGCATGTCCAGTG
TTTTGATTGGCTGTCAACAAAGAACGGTGGTCGGTGGTGACGTGCTTTAC
GCAAACCAGTAAGTGTCGGTAATTATCCTTCAGAAATACNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNATCTTGCAATTGACATTGTTATGATTATAC
AATTTATTATAGAATTCTTTAAATATTATATTGCTGCGGTGGCATGTTAG
TGTAAGCTATGTACTAGTTCAGTATTGAAAGGAGCTAAATGACATAAACG
CTGATGGGGATACTTAGTTGCCAGGCTTCCAAATTTTTTATTGTTGACGT
TTTCAATTAGATAGAAATTTTGGTTTTGAATCTTCACAAATGATGATTTA
TTTTCGGTAATCTTTCCAATTTAGGTATTATATCGGTTATAAAGACCGAT
TTCTTACCCCTCTTAGTCACTGAATTCTTTTAGTTTTTACTTCCAGATCA
ACAATCTCGTTACAATCAGGGTGTAATGAATATTGTCAATGTTCCACAAG
ATATTATAAACCAGTTTGTTCAGTGGTCGACCAACAGACATATTTTTCAC
CTTGCCACGCTGGATGCTCCGTTAACCATACTG

Coding sequence (CDS) from alignment at sc0000049:716815..721647-

>TCONS_00004938 ID=TCONS_00004938|Name=TCONS_00004938|organism=Clytia hemisphaerica|type=CDS|length=4116bp|location=Sequence derived from alignment at sc0000049:716815..721647- (Clytia hemisphaerica)
ATCAACAATCTCGTTACAATCAGGGTGTAATGAATATTGTCAATGTTCCA
CAAGATATTATAAACCAGTTTGTTCAGTGGTCGACCAACAGACATATTTT
TCACCTTGCCACGCTGGATGCTCCGTTAACCATACTGAGCGGCAGTTGGC
ATGTTTACTGGTGCATTTTTTGTGAAGAAATATAAATGGGATTGTAAAAG
AATCATTCGCAATGCATTTATTGTGTCCCTCCTTTCAACGATTGGCATGT
CCAGTGTTTTGATTGGCTGTCAACAAAGAACGGTGGTCGGTGGTGACGTG
CTTTACGCAAACCACCTGAGAATTCCCATCTGACACCAGAAAACAGGAAT
TGGGTCGGTGCGTGGTGGCTTGGTTACCTCGTTGGTGCTGGCATCGTTAT
TCTTGCTTCAATACCTATGTTAGGATTTCCCTCGCTCTTTGATGATACGG
AGCGCGTTCGAAAGGAGAAAAACAAATTTGCTGACACAAACAAAGAAGAT
CACGATCTCAACCACGATTTGAAGTCATTATGGCCGTCGACGAAAAGCTT
GTTCAAGAATGTTCCCTTCATTTTGATCTGTTTGGGAAACGCAATGGAGA
GTTTTCTGATTGGTGGTTTTGCAATTTTTCTTCCAAAGTTCATTGAGACA
CAGTTTCATCAGACAGCAGCAAAGTCTGCTCTCCTCACGGGGGTCGTTAT
CATTCCAGATGGTGTCAAAATATCAAGCTGGCATTACCTTACTGTCAGAT
ACATGTCGATTAAACATGAGCAGTACTTCAATAGACACTTGTGAAGAACC
AAGTGAAAATGGAAATCAATATTTTGGTATTTTTGCAATAGGTTATATCT
GTATGGGACTTGGCGTTACGCCCTTATATAGTCTGGGATACGCCCATTGT
GAAGATATTGTAGGGCGTGGCAAGAGTAGTCTCTATTTGAGCATTATGAG
TGCGATCGCAGCGTTTGGTCCAGCTGCTGGCTTCACAATTGCAAACCCCA
TTCTCAATGTTTTCGTTGACTTAAAACAGATCAACAATCTCGTTACAATC
AGGGTGTAATGAATATTGTCAATGTTCCACAAGATATTATAAACCAGTTT
GTTCAGTGGTCGACCAACAGACATATTTTTCACCTTGCCACGCTGGATGC
TCCGTTAACCATACTGAGCGGCAGTTGGCATGTTTACTGGTGCATTTTTT
GTGAAGAAATATAAATGGGATTGTAAAAGAATCATTCGCAATGCATTTAT
TGTGTCCCTCCTTTCAACGATTGGCATGTCCAGTGTTTTGATTGGCTGTC
AACAAAGAACGGTGGTCGGTGGTGACGTGCTTTACGCAAACCACCTGAGA
ATTCCCATCTGACACCAGAAAACAGGAATTGGGTCGGTGCGTGGTGGCTT
GGTTACCTCGTTGGTGCTGGCATCGTTATTCTTGCTTCAATACCTATGTT
AGGATTTCCCTCGCTCTTTGATGATACGGAGCGCGTTCGAAAGGAGAAAA
ACAAATTTGCTGACACAAACAAAGAAGATCACGATCTCAACCACGATTTG
AAGTCATTATGGCCGTCGACGAAAAGCTTGTTCAAGAATGTTCCCTTCAT
TTTGATCTGTTTGGGAAACGCAATGGAGAGTTTTCTGATTGGTGGTTTTG
CAATTTTTCTTCCAAAGTTCATTGAGACACAGTTTCATCAGACAGCAGCA
AAGTCTGCTCTCCTCACGGGGGTCGTTATCATTCCAGATGGTGTCAAAAT
ATCAAGCTGGCATTACCTTACTGTCAGATACATGTCGATTAAACATGAGC
AGTACTTCAATAGACACTTGTGAAGAACCAAGTGAAAATGGAAATCAATA
TTTTGGTATTTTTGCAATAGGTTATATCTGTATGGGACTTGGCGTTACGC
CCTTATATAGTCTGGGATACGCCCATTGTGAAGATATTGTAGGGCGTGGC
AAGAGTAGTCTCTATTTGAGCATTATGAGTGCGATCGCAGCGTTTGGTCC
AGCTGCTGGCTTCACAATTGCAAACCCCATTCTCAATGTTTTCGTTGACT
TAAAACAGATCAACAATCTCGTTACAATCAGGGTGTAATGAATATTGTCA
ATGTTCCACAAGATATTATAAACCAGTTTGTTCAGTGGTCGACCAACAGA
CATATTTTTCACCTTGCCACGCTGGATGCTCCGTTAACCATACTGAGCGG
CAGTTGGCATGTTTACTGGTGCATTTTTTGTGAAGAAATATAAATGGGAT
TGTAAAAGAATCATTCGCAATGCATTTATTGTGTCCCTCCTTTCAACGAT
TGGCATGTCCAGTGTTTTGATTGGCTGTCAACAAAGAACGGTGGTCGGTG
GTGACGTGCTTTACGCAAACCACCTGAGAATTCCCATCTGACACCAGAAA
ACAGGAATTGGGTCGGTGCGTGGTGGCTTGGTTACCTCGTTGGTGCTGGC
ATCGTTATTCTTGCTTCAATACCTATGTTAGGATTTCCCTCGCTCTTTGA
TGATACGGAGCGCGTTCGAAAGGAGAAAAACAAATTTGCTGACACAAACA
AAGAAGATCACGATCTCAACCACGATTTGAAGTCATTATGGCCGTCGACG
AAAAGCTTGTTCAAGAATGTTCCCTTCATTTTGATCTGTTTGGGAAACGC
AATGGAGAGTTTTCTGATTGGTGGTTTTGCAATTTTTCTTCCAAAGTTCA
TTGAGACACAGTTTCATCAGACAGCAGCAAAGTCTGCTCTCCTCACGGGG
GTCGTTATCATTCCAGATGGTGTCAAAATATCAAGCTGGCATTACCTTAC
TGTCAGATACATGTCGATTAAACATGAGCAGTACTTCAATAGACACTTGT
GAAGAACCAAGTGAAAATGGAAATCAATATTTTGGTATTTTTGCAATAGG
TTATATCTGTATGGGACTTGGCGTTACGCCCTTATATAGTCTGGGATACG
CCCATTGTGAAGATATTGTAGGGCGTGGCAAGAGTAGTCTCTATTTGAGC
ATTATGAGTGCGATCGCAGCGTTTGGTCCAGCTGCTGGCTTCACAATTGC
AAACCCCATTCTCAATGTTTTCGTTGACTTAAAACAGATCAACAATCTCG
TTACAATCAGGGTGTAATGAATATTGTCAATGTTCCACAAGATATTATAA
ACCAGTTTGTTCAGTGGTCGACCAACAGACATATTTTTCACCTTGCCACG
CTGGATGCTCCGTTAACCATACTGAGCGGCAGTTGGCATGTTTACTGGTG
CATTTTTTGTGAAGAAATATAAATGGGATTGTAAAAGAATCATTCGCAAT
GCATTTATTGTGTCCCTCCTTTCAACGATTGGCATGTCCAGTGTTTTGAT
TGGCTGTCAACAAAGAACGGTGGTCGGTGGTGACGTGCTTTACGCAAACC
ACCTGAGAATTCCCATCTGACACCAGAAAACAGGAATTGGGTCGGTGCGT
GGTGGCTTGGTTACCTCGTTGGTGCTGGCATCGTTATTCTTGCTTCAATA
CCTATGTTAGGATTTCCCTCGCTCTTTGATGATACGGAGCGCGTTCGAAA
GGAGAAAAACAAATTTGCTGACACAAACAAAGAAGATCACGATCTCAACC
ACGATTTGAAGTCATTATGGCCGTCGACGAAAAGCTTGTTCAAGAATGTT
CCCTTCATTTTGATCTGTTTGGGAAACGCAATGGAGAGTTTTCTGATTGG
TGGTTTTGCAATTTTTCTTCCAAAGTTCATTGAGACACAGTTTCATCAGA
CAGCAGCAAAGTCTGCTCTCCTCACGGGGGTCGTTATCATTCCAGATGGT
GTCAAAATATCAAGCTGGCATTACCTTACTGTCAGATACATGTCGATTAA
ACATGAGCAGTACTTCAATAGACACTTGTGAAGAACCAAGTGAAAATGGA
AATCAATATTTTGGTATTTTTGCAATAGGTTATATCTGTATGGGACTTGG
CGTTACGCCCTTATATAGTCTGGGATACGCCCATTGTGAAGATATTGTAG
GGCGTGGCAAGAGTAGTCTCTATTTGAGCATTATGAGTGCGATCGCAGCG
TTTGGTCCAGCTGCTGGCTTCACAATTGCAAACCCCATTCTCAATGTTTT
CGTTGACTTAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002792XLOC_002792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004938-exon-sc0000049-1575043694:720780..721647TCONS_00004938-exon-sc0000049-1575043694:720780..721647Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1575043694:719947..720340TCONS_00004938-exon-sc0000049-1575043694:719947..720340Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1575043694:719390..719567TCONS_00004938-exon-sc0000049-1575043694:719390..719567Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1575043694:716815..716951TCONS_00004938-exon-sc0000049-1575043694:716815..716951Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1510915933:720780..721647TCONS_00004938-exon-sc0000049-1510915933:720780..721647Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1510915933:719947..720340TCONS_00004938-exon-sc0000049-1510915933:719947..720340Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1510915933:719390..719567TCONS_00004938-exon-sc0000049-1510915933:719390..719567Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1510915933:716815..716951TCONS_00004938-exon-sc0000049-1510915933:716815..716951Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1491911889:720780..721647TCONS_00004938-exon-sc0000049-1491911889:720780..721647Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1491911889:719947..720340TCONS_00004938-exon-sc0000049-1491911889:719947..720340Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1491911889:719390..719567TCONS_00004938-exon-sc0000049-1491911889:719390..719567Clytia hemisphaericaexon
TCONS_00004938-exon-sc0000049-1491911889:716815..716951TCONS_00004938-exon-sc0000049-1491911889:716815..716951Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004938-proteinTCONS_00004938-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:716815..721647 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0786076	0.10228	0	0.0300853	0.571337	0.232739	2.70057	2.25602	1.75739	1.72181	4.32799	1.62644	17.0625	22.8005	8.47592	13.4888	4.79054	6.81422	22.5444	18.0897	7.06555	6.08244	2.07412	1.75018	5.24744	2.65191	2.09393	2.30742	1.36449	1.14995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004156OA_transporter
IPR002350Kazal_dom
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00004938 vs. Swiss-Prot (Human)
Match: SO4C1 (Solute carrier organic anion transporter family member 4C1 OS=Homo sapiens GN=SLCO4C1 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.096e-71
Identity = 158/453 (34.88%), Postives = 236/453 (52.10%), Query Frame = 2 
Query:  221 ERRYGWRSFRPDCLQFLNRPVFFLASLCLIVFGQGLACTGINNTMITSIEKRYGFKTTQIGIFSTLFHTSVGTFVSIV*YFGHR-HRPFTXXXXXXXXXXXXXXXTIPHYMVSKYQAGITLLSDTCRLNMSSTSIDTCEEPSENGNQYFGIFAIGYICMGLGVTPLYSLGYAHCEDIVGRGKSSLYLSIMSAIAAFGPAAGFTIANPILNVFVDLKQPENSHLTPENRNWVGAWWLGYLVGAGIVILASIPMLGFPSLFDDTERVRKEKNKFADTNKEDHDLN--HDLKSLWPSTKSLFKNVPFILICLGNAMESFLIGGFAIFLPKFIETQFHQTAAKSALLTGVVIIPGAAVGMFTGAFFVKKYKWDCKRIIRNAFIVSLLS-TIGMSSVLIGCQQRTVVGGDVLYANQSTI-SLQSGCNEYCQCSTRYYKPVCSVVDQQTYFSPCHAGCS 1564
            E  YGWR+F P CLQ  N P  FL   CL+   QG+   G+ N  I+++EKRY  K++  G+ S+ +  S       V +FG R H+P  L      IGLG  + ++P +   +Y+ G +L  DTC    +STS  +      N   Y  +F +G + +G G TPLY+LG A  +D V   KSSLY+    A++  GPA G+ +   +L +++D+   E++ +T ++  W+GAWW+G+L+         IP   FP     T  ++  K   A  +  + D+     +K    + K+L KN  F+ + L  + E+ +  GFA FLPKFIE QF  T++ +A L G V+IPGAA+G   G F V K++  CK  ++ A   S ++ T+    +   C+     G    Y     + +L + CN  C CS  YY PVC   D   YFSPC AGCS
Sbjct:   85 EGSYGWRNFHPQCLQRCNTPGGFLLHYCLLAVTQGIVVNGLVNISISTVEKRYEMKSSLTGLISSSYDISFCLLSLFVSFFGERGHKPRWLAFAAFMIGLGALVFSLPQFFSGEYKLG-SLFEDTCVTTRNSTSCTSSTSSLSN---YLYVFILGQLLLGAGGTPLYTLGTAFLDDSVPTHKSSLYIGTGYAMSILGPAIGYVLGGQLLTIYIDVAMGESTDVTEDDPRWLGAWWIGFLLSWIFAWSLIIPFSCFPKHLPGTAEIQAGKTSQAHQSNSNADVKFGKSIKDFPAALKNLMKNAVFMCLVLSTSSEALITTGFATFLPKFIENQFGLTSSFAATLGGAVLIPGAALGQILGGFLVSKFRMTCKNTMKFALFTSGVALTLSFVFMYAKCENEPFAGVSESYNGTGELGNLIAPCNANCNCSRSYYYPVCG--DGVQYFSPCFAGCS 531
The following BLAST results are available for this feature:
BLAST of TCONS_00004938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SO4C11.096e-7134.88Solute carrier organic anion transporter family me... [more]
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