TCONS_00004938-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004938-protein
Unique Name	TCONS_00004938-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	343

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004938-protein ID=TCONS_00004938-protein|Name=TCONS_00004938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MVSKYQAGITLLSDTCRLNMSSTSIDTCEEPSENGNQYFGIFAIGYICMG
LGVTPLYSLGYAHCEDIVGRGKSSLYLSIMSAIAAFGPAAGFTIANPILN
VFVDLKQPENSHLTPENRNWVGAWWLGYLVGAGIVILASIPMLGFPSLFD
DTERVRKEKNKFADTNKEDHDLNHDLKSLWPSTKSLFKNVPFILICLGNA
MESFLIGGFAIFLPKFIETQFHQTAAKSALLTGVVIIPGAAVGMFTGAFF
VKKYKWDCKRIIRNAFIVSLLSTIGMSSVLIGCQQRTVVGGDVLYANQST
ISLQSGCNEYCQCSTRYYKPVCSVVDQQTYFSPCHAGCSVNHT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002792	XLOC_002792	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004938	TCONS_00004938	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004156	OA_transporter
IPR002350	Kazal_dom
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 176..289 e-value: 4.4E-15 score: 55.1
None	No IPR available	GENE3D	1.20.1250.20		coord: 21..162 e-value: 1.2E-10 score: 40.5
IPR004156	Organic anion transporter polypeptide OATP	PFAM	PF03137	OATP	coord: 19..330 e-value: 1.8E-78 score: 264.1
IPR002350	Kazal domain	PROSITE	PS51465	KAZAL_2	coord: 301..343 score: 10.565
IPR002350	Kazal domain	SUPERFAMILY	100895	Kazal-type serine protease inhibitors	coord: 304..339
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 39..277 e-value: 2.15439E-7 score: 49.6197
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 39..279

Blast

[Close]

BLAST of TCONS_00004938-protein vs. Swiss-Prot (Human)
Match: SO4C1 (Solute carrier organic anion transporter family member 4C1 OS=Homo sapiens GN=SLCO4C1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.361e-51
Identity = 117/340 (34.41%), Postives = 177/340 (52.06%), Query Frame = 0

Query:    4 KYQAGITLLSDTCRLNMSSTSIDTCEEPSENGNQYFGIFAIGYICMGLGVTPLYSLGYAHCEDIVGRGKSSLYLSIMSAIAAFGPAAGFTIANPILNVFVDLKQPENSHLTPENRNWVGAWWLGYLVGAGIVILASIPMLGFPSLFDDTERVRKEKNKFADTNKEDHDLN--HDLKSLWPSTKSLFKNVPFILICLGNAMESFLIGGFAIFLPKFIETQFHQTAAKSALLTGVVIIPGAAVGMFTGAFFVKKYKWDCKRIIRNAFIVSLLS-TIGMSSVLIGCQQRTVVGGDVLYANQSTI-SLQSGCNEYCQCSTRYYKPVCSVVDQQTYFSPCHAGCS 339
            +Y+ G +L  DTC    +STS  +      N   Y  +F +G + +G G TPLY+LG A  +D V   KSSLY+    A++  GPA G+ +   +L +++D+   E++ +T ++  W+GAWW+G+L+         IP   FP     T  ++  K   A  +  + D+     +K    + K+L KN  F+ + L  + E+ +  GFA FLPKFIE QF  T++ +A L G V+IPGAA+G   G F V K++  CK  ++ A   S ++ T+    +   C+     G    Y     + +L + CN  C CS  YY PVC   D   YFSPC AGCS
Sbjct:  198 EYKLG-SLFEDTCVTTRNSTSCTSSTSSLSN---YLYVFILGQLLLGAGGTPLYTLGTAFLDDSVPTHKSSLYIGTGYAMSILGPAIGYVLGGQLLTIYIDVAMGESTDVTEDDPRWLGAWWIGFLLSWIFAWSLIIPFSCFPKHLPGTAEIQAGKTSQAHQSNSNADVKFGKSIKDFPAALKNLMKNAVFMCLVLSTSSEALITTGFATFLPKFIENQFGLTSSFAATLGGAVLIPGAALGQILGGFLVSKFRMTCKNTMKFALFTSGVALTLSFVFMYAKCENEPFAGVSESYNGTGELGNLIAPCNANCNCSRSYYYPVCG--DGVQYFSPCFAGCS 531

The following BLAST results are available for this feature:

BLAST of TCONS_00004938-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004938-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SO4C1	1.361e-51	34.41	Solute carrier organic anion transporter family me...	[more]

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TCONS_00004938-protein (polypeptide) - C. hemisphaerica