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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004872 ID=TCONS_00004872|Name=TCONS_00004872|organism=Clytia hemisphaerica|type=transcript|length=2565bpRun BLAST on NCBI protein sequence of TCONS_00004872-protein >TCONS_00004872-protein ID=TCONS_00004872-protein|Name=TCONS_00004872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=677bp MTTNRSGYVAKRKIVVSYTLRDEFEPQNRLGINALQFDNKVNRLFTAGRDRun BLAST on NCBI transcript from alignment at sc0000049:527114..535573+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004872 ID=TCONS_00004872|Name=TCONS_00004872|organism=Clytia hemisphaerica|type=transcript|length=8460bp|location=Sequence derived from alignment at sc0000049:527114..535573+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:527114..535573+ >TCONS_00004872 ID=TCONS_00004872|Name=TCONS_00004872|organism=Clytia hemisphaerica|type=CDS|length=36612bp|location=Sequence derived from alignment at sc0000049:527114..535573+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004872 vs. Swiss-Prot (Human)
Match: WDR48 (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1) HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0 Identity = 376/688 (54.65%), Postives = 479/688 (69.62%), Query Frame = 3
Query: 102 NRSGYVAKRKIVVSYTLRDEFEPQNRLGINALQFDNKVNRLFTAGRDSIIRCWNPDVEKNH-FLHSFEHHTDWVNDLVLCRDGRTLLSASSDTTVKVWDAYGGFCMSTLRTHKDYVKALAYAKDRELVASGGFDKQIFLWDXXXXXXXXXXXXXXITSSLTGQKESIYSIAMNAAGTILVSGSTEKVLRIWDPRTCAKTMKLKGHGDNVKSVILKADGTECLSGSSDGTVRLWSIGQQRCIATYKFHDAGVWSLIADDNFNYFYSSGKDKRIFYTDLNMDENPTFLFEESHPVLSMKLVHS-QPQSMLWVATTNSHLNCWPVGNPPVLLDDIDLESS-----KPLVEKPCKTIKGSTGIRQIHTCSNKRYVLTKDSNDNVALWDVLKAVKLTDFGKINYEDECMKRKEMVHVPNWFTVDAKTGMLNVTLDESDCFSSWMVTEDV--PALPMEDPKKVIGDSRFINYGVLLLRALLAHWPESQYTPVADEASPGTNEETLAPGPDVHSDIGSKSSPCNGFFSLPSHTPLVFGEGGGCGRTYFRLLVGDAVGENECAILSETVPPWVHEVVVKKASPKFTKITFLLVP-LSNGSKNNKRDRLTASDMIHVKKVMEHVYEKIVLSDN-------GNNSNNSEKMPPEELSALAESKVEIHCNDMYLDPKMDLRTIRSFIWKSSSDLVLQYK 2114
+R +RK+ VSY +RDE E NR G+NALQ D +NRLFTAGRDSIIR W+ + K ++ S EHHTDWVND+VLC +G+TL+SASSDTTVKVW+A+ GFCMSTLRTHKDYVKALAYAKD+ELVAS G D+QIFLWDVN LTALTA+NNTV TSSL+G K+SIYS+AMN GTI+VSGSTEKVLR+WDPRTCAK MKLKGH DNVK+++L DGT+CLSGSSDGT+RLWS+GQQRCIATY+ HD GVW+L +D F + YS G+D++I+ TDL + + EE PVL M+L S P +WVATT S +N W + D ++ PL +P + IKG I Q H ++KR++LTKD+N+NVA WDVLKA K+ D GK+++EDE KR +MV+VPNWF+VD KTGML +TLDESDCF++W+ +D + DPK G LLL+ALL +WP + P+ +E + + V+ + ++ NG+F +P HTP++FGE G GRT FRLL D+ GE E +L+ETVP WV ++ V K PKF KI F L P S+G+K K+DRL+ASDM+ V+KVMEHVYEKI+ DN NN E+ E+++ LAE K+E+ C D LDP MDLRT++ FIWKS DL L Y+
Sbjct: 5 HRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLN--------LGGLLLQALLEYWPRTHVNPMDEEENEVNH---------VNGEQENRVQKGNGYFQVPPHTPVIFGEAG--GRTLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673 The following BLAST results are available for this feature:
BLAST of TCONS_00004872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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