TCONS_00004872-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004872-protein
Unique NameTCONS_00004872-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004872-protein ID=TCONS_00004872-protein|Name=TCONS_00004872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=677bp
MTTNRSGYVAKRKIVVSYTLRDEFEPQNRLGINALQFDNKVNRLFTAGRD
SIIRCWNPDVEKNHFLHSFEHHTDWVNDLVLCRDGRTLLSASSDTTVKVW
DAYGGFCMSTLRTHKDYVKALAYAKDRELVASGGFDKQIFLWDVNVLTAL
TATNNTVITSSLTGQKESIYSIAMNAAGTILVSGSTEKVLRIWDPRTCAK
TMKLKGHGDNVKSVILKADGTECLSGSSDGTVRLWSIGQQRCIATYKFHD
AGVWSLIADDNFNYFYSSGKDKRIFYTDLNMDENPTFLFEESHPVLSMKL
VHSQPQSMLWVATTNSHLNCWPVGNPPVLLDDIDLESSKPLVEKPCKTIK
GSTGIRQIHTCSNKRYVLTKDSNDNVALWDVLKAVKLTDFGKINYEDECM
KRKEMVHVPNWFTVDAKTGMLNVTLDESDCFSSWMVTEDVPALPMEDPKK
VIGDSRFINYGVLLLRALLAHWPESQYTPVADEASPGTNEETLAPGPDVH
SDIGSKSSPCNGFFSLPSHTPLVFGEGGGCGRTYFRLLVGDAVGENECAI
LSETVPPWVHEVVVKKASPKFTKITFLLVPLSNGSKNNKRDRLTASDMIH
VKKVMEHVYEKIVLSDNGNNSNNSEKMPPEELSALAESKVEIHCNDMYLD
PKMDLRTIRSFIWKSSSDLVLQYKISK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002759XLOC_002759Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004872TCONS_00004872Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR021772DUF3337
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 223..237
score: 37.53
coord: 88..102
score: 42.16
coord: 130..144
score: 34.96
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 104..143
e-value: 1.9E-6
score: 37.4
coord: 342..380
e-value: 5.4
score: 12.4
coord: 17..57
e-value: 0.35
score: 19.9
coord: 197..236
e-value: 1.1E-5
score: 35.0
coord: 239..278
e-value: 0.012
score: 24.8
coord: 282..322
e-value: 290.0
score: 1.4
coord: 62..101
e-value: 5.8E-9
score: 45.8
coord: 155..194
e-value: 2.3E-4
score: 30.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 160..194
e-value: 0.012
score: 16.4
coord: 201..236
e-value: 4.3E-4
score: 20.9
coord: 66..101
e-value: 6.3E-5
score: 23.6
coord: 107..143
e-value: 1.8E-4
score: 22.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 162..194
score: 12.246
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 69..101
score: 13.048
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 111..152
score: 13.249
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 204..245
score: 13.984
NoneNo IPR availableGENE3D2.80.10.50coord: 8..104
e-value: 6.4E-20
score: 70.7
NoneNo IPR availableGENE3D2.40.50.140coord: 105..151
e-value: 1.3E-13
score: 49.9
NoneNo IPR availableGENE3D3.10.20.90coord: 569..676
e-value: 1.2E-7
score: 31.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 479..501
NoneNo IPR availableCDDcd00200WD40coord: 31..298
e-value: 3.73788E-56
score: 192.935
IPR021772Protein of unknown function DUF3337PFAMPF11816DUF3337coord: 516..674
e-value: 4.4E-39
score: 134.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 152..442
e-value: 4.5E-38
score: 130.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 130..144
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 88..102
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 25..331
score: 44.61
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 31..383

Blast
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BLAST of TCONS_00004872-protein vs. Swiss-Prot (Human)
Match: WDR48 (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 376/688 (54.65%), Postives = 479/688 (69.62%), Query Frame = 0 
Query:    4 NRSGYVAKRKIVVSYTLRDEFEPQNRLGINALQFDNKVNRLFTAGRDSIIRCWNPDVEKNH-FLHSFEHHTDWVNDLVLCRDGRTLLSASSDTTVKVWDAYGGFCMSTLRTHKDYVKALAYAKDRELVASGGFDKQIFLWDVNVLTALTATNNTVITSSLTGQKESIYSIAMNAAGTILVSGSTEKVLRIWDPRTCAKTMKLKGHGDNVKSVILKADGTECLSGSSDGTVRLWSIGQQRCIATYKFHDAGVWSLIADDNFNYFYSSGKDKRIFYTDLNMDENPTFLFEESHPVLSMKLVHS-QPQSMLWVATTNSHLNCWPVGNPPVLLDDIDLESS-----KPLVEKPCKTIKGSTGIRQIHTCSNKRYVLTKDSNDNVALWDVLKAVKLTDFGKINYEDECMKRKEMVHVPNWFTVDAKTGMLNVTLDESDCFSSWMVTEDV--PALPMEDPKKVIGDSRFINYGVLLLRALLAHWPESQYTPVADEASPGTNEETLAPGPDVHSDIGSKSSPCNGFFSLPSHTPLVFGEGGGCGRTYFRLLVGDAVGENECAILSETVPPWVHEVVVKKASPKFTKITFLLVP-LSNGSKNNKRDRLTASDMIHVKKVMEHVYEKIVLSDN-------GNNSNNSEKMPPEELSALAESKVEIHCNDMYLDPKMDLRTIRSFIWKSSSDLVLQYK 674
            +R     +RK+ VSY +RDE E  NR G+NALQ D  +NRLFTAGRDSIIR W+ +  K   ++ S EHHTDWVND+VLC +G+TL+SASSDTTVKVW+A+ GFCMSTLRTHKDYVKALAYAKD+ELVAS G D+QIFLWDVN LTALTA+NNTV TSSL+G K+SIYS+AMN  GTI+VSGSTEKVLR+WDPRTCAK MKLKGH DNVK+++L  DGT+CLSGSSDGT+RLWS+GQQRCIATY+ HD GVW+L  +D F + YS G+D++I+ TDL   +    + EE  PVL M+L  S  P   +WVATT S +N W +          D ++       PL  +P + IKG   I Q H  ++KR++LTKD+N+NVA WDVLKA K+ D GK+++EDE  KR +MV+VPNWF+VD KTGML +TLDESDCF++W+  +D    +    DPK           G LLL+ALL +WP +   P+ +E +   +         V+ +  ++    NG+F +P HTP++FGE G  GRT FRLL  D+ GE E  +L+ETVP WV ++ V K  PKF KI F L P  S+G+K  K+DRL+ASDM+ V+KVMEHVYEKI+  DN        NN    E+   E+++ LAE K+E+ C D  LDP MDLRT++ FIWKS  DL L Y+
Sbjct:    5 HRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLN--------LGGLLLQALLEYWPRTHVNPMDEEENEVNH---------VNGEQENRVQKGNGYFQVPPHTPVIFGEAG--GRTLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673
The following BLAST results are available for this feature:
BLAST of TCONS_00004872-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR480.000e+054.65WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
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