TCONS_00004850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004850
Unique NameTCONS_00004850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004850 ID=TCONS_00004850|Name=TCONS_00004850|organism=Clytia hemisphaerica|type=transcript|length=1440bp
TTTTGAACTTTTATGACTTTGGTTGGCTGTTTACGAACAGAGTGTTGAAC
AAGGGTTTTAGAAACATGCATTTGACATGGAAATTAAAGCGAAAGCTAAC
AGTATCGATTGGCATAATATACCAATGTCTTTATTGCTTTGAGTACTCAT
CGACTGCAATTTCTGCTTTATATTActataaaaactctttcaatgTCGAA
AATCCTAAATTTTATTATGGATGCTCAATGGCAGCAATATTTCTCAGCGC
TATCATTTCAAACTACATATGTGGACGAGTGATGGATAAGACAAGAGATT
TAAGGAAGGTTGTATTGAATTTATCGTTATGCAACATTCTTGGTAATCTA
ACATATACACTGACTTGGTCGCCCTGGCTCNATGGATAAGACAAGAGATT
TAAGGAAGATTGTATTGACTTTATCGTTATTTAACATTATTGGTAATCTA
ACATATACACTGACTTGGTCGCCCTGGCTTCCTGTTTTGGGCCGCTTTGT
GTGTGGTATTGCAACTGGAATTGGTGCTGCAGTTACAGGAGAGTTCAATC
GCATTTATAAGAAGAAGAAGGAGTTGGCACAAATGCTATCGTTGAAAGAA
CTTATCTCGACGACCTGTATGGCACTCGCACCATGCACGCCTTTGTTTTT
CTATGGCATTCATTTCCAAATCGGTTCGTGGAAAATCAATCAAGATAATT
TCATTGGCATATTTCTTGCTTCAATTACGTCATTCATGTGGATCTTCTCT
TATTTCGGGCTACACAATTTGACCAAGGATCCGGAAAGTCCTTTCTCTGA
TTGTAACACTATAAACAAGAATAATAGTAATGCAAAACCATCCAATGATG
ACAAACTATGGACAACAAAGGACATTCTAAAGGATCGACATCTAATGTTA
TTGTTGGTCGCTGAAGGGTTTCTAGCTTTTCAATACTTTCAAATGGAGCT
CGAAATCAATTTGATGGCAGTTGAATATTTCCATTGGCCAATGCTGCAAC
TTGGTTTAATCACAAGTATTGCTATTATTGTGTCTACTGGAACTTTGTAT
TTGACTCAGAAGAAACTCATGGGTTCTGCTTTGAATATATTCTTTCTCTA
TGTTGTTGGTTTGGTAATTATTGGAGTTCTAGAATCCATTATTTTATTTG
GTACTGTTACAAAGTTCGATAAACCATTGCAGCATGCAGTTATCTTCACC
TCCTTATTCTTTAACATCGTTCAGGGTTTCGGATCGACAGTTTACTGTCA
ATGGTTGATGTTCTCCATAACTCCTTCACATTCCTCGAGTATCGTCGAAT
CCCATCGATATATCATCGCCAGAGCTTTGGCGTGCTTGGCTTTTTTTACT
GCCAGTTatgtttatgatattttgaagTATATAATTCCAGTCTATAGTTT
AATtacttatattttaattttgttattgttgtcgAATCGG
Run BLAST on NCBI

transcript from alignment at sc0000049:203050..205357+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004850 ID=TCONS_00004850|Name=TCONS_00004850|organism=Clytia hemisphaerica|type=transcript|length=2308bp|location=Sequence derived from alignment at sc0000049:203050..205357+ (Clytia hemisphaerica)
TTTTGAACTTTTATGACTTTGGTTGGCTGTTTACGAACAGAGTGTTGAAC AAGGGTTTTAGAAACATGCATTTGACATGGAAATTAAAGCGAAAGCTAAC AGTATCGATTGGCATAATATACCAATGTCTTTATTGCTTTGAGTACTCAT CGACTGCAATTTCTGCTTTATATTActataaaaactctttcaatgTCGAA AATCCTAAATTTTATTATGGATGCTCAATGGCAGCAATATTTCTCAGCGC TATCATTTCAAACTACATATGTGGACGAGTGATGGATAAGACAAGAGATT TAAGGAAGGTTGTATTGAATTTATCGTTATGCAACATTCTTGGTAATCTA ACATATACACTGACTTGGTCGCCCTGGCTCNATGGATAAGACAAGAGATT TAAGGAAGATTGTATTGACTTTATCGTTATTTAACATTATTGGTAATCTA ACATATACACTGACTTGGTCGCCCTGGCTTCCTGTTTTGGGCCGCTTTGT GTGTGGTATTGCAACTGGAATTGGTGCTGCAGTTACAGGTAAATAATTGA TACTCGTTGGGTATCATACTTTcaacccctgtctcagtgacccggaaACG TTAAAACCCACCGGGGTGGCTGTATGAAAATAGTAAATTTCACCgggtct gaaaatttctatcatCGGGGTTAGGGTCAAAATATGCCAGAAATTTTGTC ATCGAAAATAGTTCCGTCTATTGGGTGGTGTGTTTTAACATCGATGGTTT TAAGTGAATTTCCACTTCTTTCTGCACCAAAAAATAAatgagttttattt tttgatgcaGTTTGATGGCTCCctgaaaattctttgaaaaaaaacaacat acaaGTGGCTTGCACCGACTGGAACAAATCTCGAATTGATTAGAAGCATT TTTTTAAAGGTATCGAAAAACTGAAGTTATATGGATAAAAAGATGCCTGT TTTGGGCCGCTTTGTGTGCGGTATTGCAGCGGGAATTGGAGTTTCATTAA TAAGTACATTTTaagggaaaatttcaaaaatgaaattcacTTGGCATAAT ACCTTTAGGATGGCAGTTCAAACCTAAATAGTCTTGCAAAGTTCTTACAC CGGTTTATACAGTCCCCGAGCGAAACAGTCAAGTCGGTTCGTGGATCCTT ATAATCCCGGAGAACTAATGAGAGAATACTGTCTAAAATCATCCTAGAAT ACTAAGAAAATTATTGACTCCATCGATTTAGCCCgaggtccacttaaagc ttttttatagactggatagCGCGATTAAGGGATTACTTCACTGGActcgt catcaaaaattattagaaagcaaagttcagccagaagtagactctagtct actaTCGATTTAGTTTTACAAAATACTTCATTTATGTTTCATTCTTCTTT TCCCAGGAGAGTTCAATCGCATTTATAAGAAGAAGAAGGAGTTGGCACAA ATGCTATCGTTGAAAGAACTTATCTCGACGACCTGTATGGCACTCGCACC ATGCACGCCTTTGTTTTTCTATGGCATTCATTTCCAAATCGGTTCGTGGA AAATCAATCAAGATAATTTCATTGGCATATTTCTTGCTTCAATTACGTCA TTCATGTGGATCTTCTCTTATTTCGGGCTACACAATTTGACCAAGGATCC GGAAAGTCCTTTCTCTGATTGTAACACTATAAACAAGAATAATAGTAATG CAAAACCATCCAATGATGACAAACTATGGACAACAAAGGACATTCTAAAG GATCGACATCTAATGTTATTGTTGGTCGCTGAAGGGTTTCTAGCTTTTCA ATACTTTCAAATGGAGCTCGAAATCAATTTGATGGCAGTTGAATATTTCC ATTGGCCAATGCTGCAACTTGGTTTAATCACAAGTATTGCTATTATTGTG TCTACTGGAACTTTGTATTTGACTCAGAAGAAACTCATGGGTTCTGCTTT GAATATATTCTTTCTCTATGTTGTTGGTTTGGTAATTATTGGAGTTCTAG AATCCATTATTTTATTTGGTACTGTTACAAAGTTCGATAAACCATTGCAG CATGCAGTTATCTTCACCTCCTTATTCTTTAACATCGTTCAGGGTTTCGG ATCGACAGTTTACTGTCAATGGTTGATGTTCTCCATAACTCCTTCACATT CCTCGAGTATCGTCGAATCCCATCGATATATCATCGCCAGAGCTTTGGCG TGCTTGGCTTTTTTTACTGCCAGTTatgtttatgatattttgaagTATAT AATTCCAGTCTATAGTTTAATtacttatattttaattttgttattgttgt cgAATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002748XLOC_002748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004850-exon-sc0000049-1491911889:203050..203587TCONS_00004850-exon-sc0000049-1491911889:203050..203587Clytia hemisphaericaexon
TCONS_00004850-exon-sc0000049-1510915933:203050..203587TCONS_00004850-exon-sc0000049-1510915933:203050..203587Clytia hemisphaericaexon
TCONS_00004850-exon-sc0000049-1575043694:203050..203587TCONS_00004850-exon-sc0000049-1575043694:203050..203587Clytia hemisphaericaexon
TCONS_00004850-exon-sc0000049-1491911889:204456..205357TCONS_00004850-exon-sc0000049-1491911889:204456..205357Clytia hemisphaericaexon
TCONS_00004850-exon-sc0000049-1510915933:204456..205357TCONS_00004850-exon-sc0000049-1510915933:204456..205357Clytia hemisphaericaexon
TCONS_00004850-exon-sc0000049-1575043694:204456..205357TCONS_00004850-exon-sc0000049-1575043694:204456..205357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:203050..205357 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.73777 3.1887 1.00566 0.691522 0 0.0417293 0.037053 0.231582 0.0706852 0 0 0.0191941 0.607077 0.505092 0.604814 0.507399 0.371136 0.679117 1.14248 0.554322 0.460084 0.204777 5.6615 3.79814 0.439932 0.304209 3.19763 2.91752 1.98926 2.73807
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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