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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004849 ID=TCONS_00004849|Name=TCONS_00004849|organism=Clytia hemisphaerica|type=transcript|length=663bp
AATACCTTAGTTGATAGAAAACATTTGTAAGACCATGGGAATagtatttt
aaaattcaaatatatTTCTCGATTAGTATAACACATAACCTATACATAAA
TAATCCACAGTAATGATTGCGTATAGCCCATTTTTATTTGCCGGCTCTAG
GTCCAGAGGGCGGGATTTGATTCTCGTCCAATAAAAGTTCTTTGAGACGT
TCATCCAATTGTTTTGCAGAAACATCAAAACTCTGGTGATAGTCTTTACT
TTCGAAATCGATTAAGTCATCAAGATCAGCAACGATACGATTAATGATTC
GCTTTTGTGTTATTCTGccttcttcatctttatttataaggaGAGTTCTT
GACTCGATAATCCCTGCCACGAAGAGGGATAGTATAACCAATGGTAAAAC
ATTTGCCATTTTGTTCTCGATGTTCTGAATGATAGGAGCGACGGATTCTT
TAACTTGTATTGCTTGTTGTTGTGGACGTCAATTAAATCAATCTTAAAAG
CGTTGAAATTCTCAATCAAGGTACCAGGTAGTCAAGAAGCTGAGGAAAGA
AGACTTCATAGAGATATGAAATGGTACTGTGCTACCATAGCAACCAAGAA
TGACGTTGCTAAGGAAATGACTGAAGTAACCATGGAAACCAACATACTTG
ATCTTGATAATAA Run BLAST on NCBI transcript from alignment at sc0000049:184191..187774+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004849 ID=TCONS_00004849|Name=TCONS_00004849|organism=Clytia hemisphaerica|type=transcript|length=3584bp|location=Sequence derived from alignment at sc0000049:184191..187774+ (Clytia hemisphaerica)
AATACCTTAGTTGATAGAAAACATTTGTAAGACCATGGGAATagtatttt
aaaattcaaatatatTTCTCGATTAGTATAACACATAACCTATACATAAA
TAATCCACAGTAATGATTGCGTATAGCCCATTTTTATTTGCCGGCTCTAG
GTCCAGAGGGCGGGATTTGATTCTCGTCCAATAAAAGTTCTTTGAGACGT
TCATCCAATTGTTTTGCAGAAACATCAAAACTCTGGTGATAGTCTTTACT
TTCGAAATCGATTAAGTCATCAAGATCAGCAACGATACGATTAATGATTC
GCTTTTGTGTTATTCTGccttcttcatctttatttataaggaGAGTTCTT
GACTCGATAATCCCTGCCACGAAGAGGGATAGTATAACCAATGGTAAAAC
ATTTGCCATTTTGTTCTCGATGTTCTGAATGATAGGAGCGACGGATTCTT
TAACTTGTATTGCTTGTTGTTGTGGACGTCAATTAAATCAATCTTAAAAG
CGTTGAAATTCTCAATCAAGGTACCAGGTAGTCaagaagtttcaaaaaaa
agaagctCGACTTAATAAATGTagattcttttttctcttttcaaatgGNA
TCAAGGTACCAGGTAGTCAAGAAGCTTCAAAAAAAAGAAGCTCGACTTAA
TAAATGTAGATTctattttctcttttcaaatGATGGTATCTACAGAAAGA
CTTTCTTAGAAACTCAGCTCTTCTGAATTGAACCTTTCTAaatgaatata
tattttattgaCCAAAGTAGTATAGGAAGGGTGACGAAGAAAAGTGGTTA
AAACGCGTCGATAACTCATCACTATGTTTACATATTCCGGAAGGATAAAA
CGGATTACTTTCACTGATATAAGGGGTCTGTTTAAATCATTTAAGGTTTC
TAACTATAAACTTTATCCCATAAACTCAAAAattctttattataagcata
tatGAATATAATGTAAGACTTTAACCGGGGGAAGAAATACTAGGGCGTGG
TCAGTCGATCTGAGGAAAACTTTAAGACTCAAAATTAAAAGTAAACTTAA
GATCATATCAGAACAACCAGTTGACTTTGACTTGATTTAGACAAGAAGAA
AATATTGTTGAATATATTGTTGTAAAGAATACGATATCCATTTCAGCGAA
ATTCTTGTTTTGATTGTAAACTAATAAAATCTTCCCTACACTATAAAGCT
AATTTTAACACAGGCCCAATATGGCTTTTCCTTTAAGCCTCAAACTTGAT
CTGACCAAATGTTTAGAAGGATGATAGACTTAGCacggaaaaaagggaaa
ttgagAAACTGAAAAGCTAAAAAGGCTTTTAAACCACGTATTACAAAATT
TCTTAGTACAAAATTATTGAATAATAAGCTACCGATTAACGCTTATCGGT
AAAACGAAAATCATTTTACGCCCTGTCTCACTATCTCTGACTCAATATAA
agtaactagccggtacccggcgtcgcacgccggtttagctgtttgctgaa
cgcatttaaagtcctttaagattttgggaagatggcttaaacacgatgaa
atcaaaattaaagggaagaattctcttcaaagttggACTCTATctctccc
gggtgacgtatcttttaaccatattttgaaaaagatttttgtggcattcc
caaattacaccataccggcgaccagcgacgtccgagaccgtccccccccg
gaaggcagcagacaaaaaagcgtgatagatagcgcaattttatgttcctt
tttataaaataacttcgtcataacttcaaaaatttttcaaattcaacaat
gacttagatttacaaataattatcgacatacatgtttaaaggtccctttt
tacgaagaaagaattctagttcttaccgccttttgaatgtatttttaatg
ttgctgttgtccTAACAAACTTGgtatgtgattcttgtgttttattttat
atttgttcttttctttaacaggttctgtttaaaagatttcttttgttttg
aaaagaattcgaatgtctcaaatcaaataaggtcgttaattacattcgaa
aacataaaacaaaagaaaagaaagaaaaaaaaagaaaagaaaaagtctaa
tctatcaatcaaaacaaagtttttataaaaaacggcgcgaatagcgttaa
acaaatttgtggagcaagaacaaaataaaagtcatcttttggaagaacaa
aaacattgcgtgcgaaaacgaaagtagcacagacagaaagaaagacaaaa
cgacatacagactaccactattaatatatagattactAATATTGTATAAG
GTTCTCACTATCAAGTAGATACTAAGGTAATTTACCTCTATACTAGTCTT
TCTGGGACCTTGGAATGGTCAGCCGAAGACGTTGTCCCACCGAAATATTA
AGGCCATTGGGGAAGTGGTAAGGCTAAAAGAGGCTGAAATTCAAAGGGCT
GATGAAAAACAGACAGGTGGAAGGAACTTTCATTTTCGACGCATTGTATA
GTCAAAACGAAATCTGGTTTCTCCTGGCGTTATTGAGTTTGGTATCGACA
GCATAACTTCGTTTATTTTATCTTTCTATTCTTGGAATCTTGGAAACACA
gcaatacttcagatggtgataaaaggaTGAAGTTTGGCACAGGTGATGAC
CCTTAGAGGGTCCAAAGCTTAGTTTCAAACAGCaacacctggccacctgc
cacaTCAAATTTAGTCGATTGGTTCCGATATTACAAGCTTTTCAGTTTTG
CCTAAAGgacttatgatgacgtcatcaaaatttatttttaaccttcataa
cttttgatagggaTATTTTTCAAGGCATGTGTTGTACCCGTTTTTCATCA
GATTTTCATGGGCTCTCTCCAATGGTACTACTCAGGGGAATGCTGAGGTG
GATTATGGATCTTCTGTATACCCCCTAAATAAGATAAATGTAAGGAACTT
TTCCTTTACCCCAATCcgtgcccatgtcggcatatgctgacatgagcatt
tttgatttctttgccattttcgggatttgccgacatgcgaaatttcgacc
tatttgcccgaaatttatcattttttacaagatttttgtATTAggtggtt
tgaaatgaaaagaaTAAATAGTtacaaacttttctatgttgaagAATAAC
TATTCTACAATGTTCAACTTAAAATTATAGCCCTTGGGTAATACTTCATA
TTTATACagaaaatgaagtaaaaatcgctactttttgtccatgtcggcat
atgccgacgtgggcaaataggtcgaaccttctttttttcccgtggcaaat
aggtcgaaccttaaaaaatacgaggggcagttaaagggttaatagctaca
ttgaaatattcaaatataaTAAACTGAAGAACGTTTTGGAAGGCACTCAA
CAGTaattatcaaaattcattgaACAAATTAAGTGGAAAATGTTAAATAA
CGATTCTTACCTGAGGAAAGAAGACTTCATAGAGATATGAAATGGTACTG
TGCTACCATAGCAACCAAGAATGACGTTGCTAAGGAAATGACTGAAGTAA
CCATGGAAACCAACATACTTGATCTTGATAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004849-exon-sc0000049-1491911889:184191..184710 | TCONS_00004849-exon-sc0000049-1491911889:184191..184710 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1510915933:184191..184710 | TCONS_00004849-exon-sc0000049-1510915933:184191..184710 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1575043694:184191..184710 | TCONS_00004849-exon-sc0000049-1575043694:184191..184710 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1491911889:184796..184814 | TCONS_00004849-exon-sc0000049-1491911889:184796..184814 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1510915933:184796..184814 | TCONS_00004849-exon-sc0000049-1510915933:184796..184814 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1575043694:184796..184814 | TCONS_00004849-exon-sc0000049-1575043694:184796..184814 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1491911889:187651..187774 | TCONS_00004849-exon-sc0000049-1491911889:187651..187774 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1510915933:187651..187774 | TCONS_00004849-exon-sc0000049-1510915933:187651..187774 | Clytia hemisphaerica | exon |
| TCONS_00004849-exon-sc0000049-1575043694:187651..187774 | TCONS_00004849-exon-sc0000049-1575043694:187651..187774 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:184191..187774 + |
Blast
The following BLAST results are available for this feature:
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