TCONS_00004825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004825
Unique NameTCONS_00004825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004825 ID=TCONS_00004825|Name=TCONS_00004825|organism=Clytia hemisphaerica|type=transcript|length=1560bp
TACAAATTCAAAGTTTCAGATTTTAGAACATATTAGATACTGACTTTGAC
ATTGAAGTGTTGTGAATTTTCCTCTCAAAGTGAATGAATGCTGTTATCAA
ATTTATCTGATAAAAGGCAAATATTTATTTGCACACATCGAATATCGCAA
ACCATCTCCAATAAAAAAGTTACATTCTACTTTCTTCCTCGTTCGGTTTA
TGGACATTCTTACTATTCGATTGGAAAGTCTTTTGTCGAATAAATGCCaa
ggtgtttttttctttcttaaaaagaacaataaaaagTTTCTTGCCATAAC
ATGATAAAATGTAAATACTCGAATTCAACGAGATGGCAAGCCACATGAtt
gatgcttggaaatggggatctTGACTTTTGAATCTTAGCAAAATAAACAT
GACTGCAAAAGACATATTTGACGCAAAAGACGCATACAATAAAGATATTG
ATTCGTTGAAAATGTCCggcaaatttcttcctttgtatGCTATAATAAAT
GTAGCCACTTGTAAAAGTCCTGCAAATCCAAGTTGAATCGTTTTTGGTAG
CACATTTCTACAAAATAGATGTATGATTTTGTATAAAATCTTTCTTCGAG
ATTGAACGGTAACGGGCTGCGTTTCCATAGCAACAATGGTCAAAACAACT
GAAGATATGGTCAAAATGAGAATCGTAAACCATTGCTGGAGAATGGTGTt
tcgtttgttttttgttgacaATTTGTGCATTGAATTGAAAGCAGTCAATA
TTTTATGTGACTTCATTAGGACTATTGCAATGAAAAAGGTGTATAAATTC
CCGGCAACAATGGTGTCAAAGAAGCAGGTGAACTTTCTTGGTTTCATATG
TGGTGATATCACTGAAACTGCACTGATCAAAATTGAGGTAAACAAATGAA
TTATAGTCAGTATAAAATCTGAGCTTTTAACAATAGGTGTTTTGTGGTAT
ATGATAAAGATGATCAATGTTAACACACAAAATGCAAGGCTAAAACCGGC
TAATCCAAAAGCCGTGAAATAGATGGTGCTTTTGACAAGATATTCTTGAC
GATATGGGTCAAAACATTTGTCGTGTttttcgttggaaagataataacga
ggacatttttgacatttttcatcATTCCCTTTGTTCAGTTTGATAAAATT
TCGTTGACATTGCTTACAAGTGAAACCATATTCGAAATTCCATTTCGTGA
ATTGTTTCAAACGTTTTCCTCTGCTTTCTTCCCAGCCTGAAGAACATTGA
TATGATTTGCATGTAGTTTGAATGGAAGCATCTATTAATGCCGTTCCGAT
TGAATCTCTCAGATCTTCCACCAAATATTCTGCGTCAGTGAAAAATATTg
tccttttataaaaaatattactCTTTCTTATCAAGACCACGCCCGAATTT
CTAAAGGGAAATTTTAATGCCCAAATTATCCAGTTCCAGGATTTTTTCAC
TTCTTCCTCACCTAACATCTcgaagattttatcaaaagttgcaAATGCTA
TTTCGACCACCGTTCTATTTTGTTCTGATTGTTTTTCAAATAGAGATAtt
tggtttttaa
Run BLAST on NCBI

protein sequence of TCONS_00004825-protein

>TCONS_00004825-protein ID=TCONS_00004825-protein|Name=TCONS_00004825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
KNQISLFEKQSEQNRTVVEIAFATFDKIFEMLGEEEVKKSWNWIIWALKF
PFRNSGVVLIRKSNIFYKRTIFFTDAEYLVEDLRDSIGTALIDASIQTTC
KSYQCSSGWEESRGKRLKQFTKWNFEYGFTCKQCQRNFIKLNKGNDEKCQ
KCPRYYLSNEKHDKCFDPYRQEYLVKSTIYFTAFGLAGFSLAFCVLTLII
FIIYHKTPIVKSSDFILTIIHLFTSILISAVSVISPHMKPRKFTCFFDTI
VAGNLYTFFIAIVLMKSHKILTAFNSMHKLSTKNKRNTILQQWFTILILT
ISSVVLTIVAMETQPVTVQSRRKILYKIIHLFCRNVLPKTIQLGFAGLLQ
VATFIIAYKGRNLPDIFNESISLLYASFASNMSFAVMFILLRFKSQDPHF
QASIMWLAISLNSSIYILSCYGKKLFIVLFKKEKNTLAFIRQKTFQSNSK
NVHKPNEEESRM
Run BLAST on NCBI

transcript from alignment at sc0000048:626382..627941

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004825 ID=TCONS_00004825|Name=TCONS_00004825|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at sc0000048:626382..627941 (Clytia hemisphaerica)
ttaaaaaccaaaTATCTCTATTTGAAAAACAATCAGAACAAAATAGAACG
GTGGTCGAAATAGCATTtgcaacttttgataaaatcttcgAGATGTTAGG
TGAGGAAGAAGTGAAAAAATCCTGGAACTGGATAATTTGGGCATTAAAAT
TTCCCTTTAGAAATTCGGGCGTGGTCTTGATAAGAAAGagtaatattttt
tataaaaggacAATATTTTTCACTGACGCAGAATATTTGGTGGAAGATCT
GAGAGATTCAATCGGAACGGCATTAATAGATGCTTCCATTCAAACTACAT
GCAAATCATATCAATGTTCTTCAGGCTGGGAAGAAAGCAGAGGAAAACGT
TTGAAACAATTCACGAAATGGAATTTCGAATATGGTTTCACTTGTAAGCA
ATGTCAACGAAATTTTATCAAACTGAACAAAGGGAATgatgaaaaatgtc
aaaaatgtcctcgttattatctttccaacgaaaaACACGACAAATGTTTT
GACCCATATCGTCAAGAATATCTTGTCAAAAGCACCATCTATTTCACGGC
TTTTGGATTAGCCGGTTTTAGCCTTGCATTTTGTGTGTTAACATTGATCA
TCTTTATCATATACCACAAAACACCTATTGTTAAAAGCTCAGATTTTATA
CTGACTATAATTCATTTGTTTACCTCAATTTTGATCAGTGCAGTTTCAGT
GATATCACCACATATGAAACCAAGAAAGTTCACCTGCTTCTTTGACACCA
TTGTTGCCGGGAATTTATACACCTTTTTCATTGCAATAGTCCTAATGAAG
TCACATAAAATATTGACTGCTTTCAATTCAATGCACAAATtgtcaacaaa
aaacaaacgaaACACCATTCTCCAGCAATGGTTTACGATTCTCATTTTGA
CCATATCTTCAGTTGTTTTGACCATTGTTGCTATGGAAACGCAGCCCGTT
ACCGTTCAATCTCGAAGAAAGATTTTATACAAAATCATACATCTATTTTG
TAGAAATGTGCTACCAAAAACGATTCAACTTGGATTTGCAGGACTTTTAC
AAGTGGCTACATTTATTATAGCatacaaaggaagaaatttgccGGACATT
TTCAACGAATCAATATCTTTATTGTATGCGTCTTTTGCGTCAAATATGTC
TTTTGCAGTCATGTTTATTTTGCTAAGATTCAAAAGTCAagatccccatt
tccaagcatcaaTCATGTGGCTTGCCATCTCGTTGAATTCGAGTATTTAC
ATTTTATCATGTTATGGCAAGAAActttttattgttctttttaagaaaga
aaaaaacaccttGGCATTTATTCGACAAAAGACTTTCCAATCGAATAGTA
AGAATGTCCATAAACCGAACGAGGAAGAAAGTAGAATGTAACTTTTTTAT
TGGAGATGGTTTGCGATATTCGATGTGTGCAAATAAATATTTGCCTTTTA
TCAGATAAATTTGATAACAGCATTCATTCACTTTGAGAGGAAAATTCACA
ACACTTCAATGTCAAAGTCAGTATCTAATATGTTCTAAAATCTGAAACTT
TGAATTTGTA

Coding sequence (CDS) from alignment at sc0000048:626382..627941

>TCONS_00004825 ID=TCONS_00004825|Name=TCONS_00004825|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at sc0000048:626382..627941 (Clytia hemisphaerica)
aaaaaccaaaTATCTCTATTTGAAAAACAATCAGAACAAAATAGAACGGT
GGTCGAAATAGCATTtgcaacttttgataaaatcttcgAGATGTTAGGTG
AGGAAGAAGTGAAAAAATCCTGGAACTGGATAATTTGGGCATTAAAATTT
CCCTTTAGAAATTCGGGCGTGGTCTTGATAAGAAAGagtaatatttttta
taaaaggacAATATTTTTCACTGACGCAGAATATTTGGTGGAAGATCTGA
GAGATTCAATCGGAACGGCATTAATAGATGCTTCCATTCAAACTACATGC
AAATCATATCAATGTTCTTCAGGCTGGGAAGAAAGCAGAGGAAAACGTTT
GAAACAATTCACGAAATGGAATTTCGAATATGGTTTCACTTGTAAGCAAT
GTCAACGAAATTTTATCAAACTGAACAAAGGGAATgatgaaaaatgtcaa
aaatgtcctcgttattatctttccaacgaaaaACACGACAAATGTTTTGA
CCCATATCGTCAAGAATATCTTGTCAAAAGCACCATCTATTTCACGGCTT
TTGGATTAGCCGGTTTTAGCCTTGCATTTTGTGTGTTAACATTGATCATC
TTTATCATATACCACAAAACACCTATTGTTAAAAGCTCAGATTTTATACT
GACTATAATTCATTTGTTTACCTCAATTTTGATCAGTGCAGTTTCAGTGA
TATCACCACATATGAAACCAAGAAAGTTCACCTGCTTCTTTGACACCATT
GTTGCCGGGAATTTATACACCTTTTTCATTGCAATAGTCCTAATGAAGTC
ACATAAAATATTGACTGCTTTCAATTCAATGCACAAATtgtcaacaaaaa
acaaacgaaACACCATTCTCCAGCAATGGTTTACGATTCTCATTTTGACC
ATATCTTCAGTTGTTTTGACCATTGTTGCTATGGAAACGCAGCCCGTTAC
CGTTCAATCTCGAAGAAAGATTTTATACAAAATCATACATCTATTTTGTA
GAAATGTGCTACCAAAAACGATTCAACTTGGATTTGCAGGACTTTTACAA
GTGGCTACATTTATTATAGCatacaaaggaagaaatttgccGGACATTTT
CAACGAATCAATATCTTTATTGTATGCGTCTTTTGCGTCAAATATGTCTT
TTGCAGTCATGTTTATTTTGCTAAGATTCAAAAGTCAagatccccatttc
caagcatcaaTCATGTGGCTTGCCATCTCGTTGAATTCGAGTATTTACAT
TTTATCATGTTATGGCAAGAAActttttattgttctttttaagaaagaaa
aaaacaccttGGCATTTATTCGACAAAAGACTTTCCAATCGAATAGTAAG
AATGTCCATAAACCGAACGAGGAAGAAAGTAGAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002734XLOC_002734Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004825-proteinTCONS_00004825-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004825-exon-sc0000048-1491911889:626382..627941TCONS_00004825-exon-sc0000048-1491911889:626382..627941Clytia hemisphaericaexon
TCONS_00004825-exon-sc0000048-1510915933:626382..627941TCONS_00004825-exon-sc0000048-1510915933:626382..627941Clytia hemisphaericaexon
TCONS_00004825-exon-sc0000048-1575043694:626382..627941TCONS_00004825-exon-sc0000048-1575043694:626382..627941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:626382..627941 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.091925	0.0705907	0.0868505	0.128571	0.106241	0.073484	0.137735	0.048037	0.031885	0.0548209	0.0462549	0.0420106	0.165407	0.183614	0.0929444	0.0323787	0.30438	0.405277	0.0558307	0.270498	0.645697	0.827421	0.303572	0.751266	0.914348	0.692838	2.08317	1.66624	0.0615792	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR017978GPCR_3_C
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00004825 vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.101e-16
Identity = 81/326 (24.85%), Postives = 155/326 (47.55%), Query Frame = -3 
Query:  227 FTCKQCQRNFIKLNKGNDEKCQKCPRYYLSNEKHDKCFDPYRQEYLVKST---IYFTAFGLAGFSLAFCVLTLIIFIIYHKTPIVKSS--DFILTIIHLFTSILISAVSVISPHMKPRKFTCFFDTIVAGNLYTFFIAIVLMKSHKILTAFNSMHKLSTKNKRNTILQQWFTILILTISSVVLTIVAMETQPVTVQSRRKILYKIIHLFCR--NVLPKTIQLGFAGLLQVATFIIAYKGRNLPDIFNESISLLYASFASNMSFAVMFI--LLRFKSQDPHFQASIMWLAISLNSSIYILSC-YGKKLFIVLFKKEKNTLAFIRQKT 1174
            F C +C       ++ +   C KCP  + SNE H  C      E+L  +    I  T F + G  L   VL   +FI +  TPIVK++  +    ++        S++  I    +P+ +TC       G  +   I+ +L+K++++L  F +    S   K   +  Q+  + + T   +V+ ++ + T P +    +++  +II + C   +++     +G+  LL    F  A+K R LP+ FNE+  + +    S + F +++I  +  + S    F +++  +AI L +S  +L+C +  K++I+LFK  +NT+  +R  T
Sbjct:  563 FECVECPDGEYS-DETDASACNKCPDDFWSNENHTSCI-AKEIEFLSWTEPFGIALTLFAVLGIFLTAFVLG--VFIKFRNTPIVKATNRELSYLLLFSLLCCFSSSLFFIG---EPQDWTCRLRQPAFGISFVLCISCILVKTNRVLLVFEAKIPTSFHRKWWGLNLQFLLVFLCTFMQIVICVIWLYTAPPSSYRNQELEDEIIFITCHEGSLMALGFLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITF----SMLIFFIVWISFIPAYASTYGKFVSAVEVIAI-LAASFGLLACIFFNKIYIILFKPSRNTIEEVRCST 876
The following BLAST results are available for this feature:
BLAST of TCONS_00004825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASR9.101e-1624.85Extracellular calcium-sensing receptor OS=Homo sap... [more]
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