TCONS_00004825-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004825-protein
Unique Name	TCONS_00004825-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	462

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004825-protein ID=TCONS_00004825-protein|Name=TCONS_00004825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
KNQISLFEKQSEQNRTVVEIAFATFDKIFEMLGEEEVKKSWNWIIWALKF
PFRNSGVVLIRKSNIFYKRTIFFTDAEYLVEDLRDSIGTALIDASIQTTC
KSYQCSSGWEESRGKRLKQFTKWNFEYGFTCKQCQRNFIKLNKGNDEKCQ
KCPRYYLSNEKHDKCFDPYRQEYLVKSTIYFTAFGLAGFSLAFCVLTLII
FIIYHKTPIVKSSDFILTIIHLFTSILISAVSVISPHMKPRKFTCFFDTI
VAGNLYTFFIAIVLMKSHKILTAFNSMHKLSTKNKRNTILQQWFTILILT
ISSVVLTIVAMETQPVTVQSRRKILYKIIHLFCRNVLPKTIQLGFAGLLQ
VATFIIAYKGRNLPDIFNESISLLYASFASNMSFAVMFILLRFKSQDPHF
QASIMWLAISLNSSIYILSCYGKKLFIVLFKKEKNTLAFIRQKTFQSNSK
NVHKPNEEESRM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002734	XLOC_002734	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004825	TCONS_00004825	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR017978	GPCR_3_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 253..274 score: 25.43 coord: 207..229 score: 36.68 coord: 292..315 score: 19.53 coord: 345..368 score: 38.93
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 192..426 e-value: 9.7E-21 score: 74.5
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 186..444 score: 20.352

Blast

[Close]

BLAST of TCONS_00004825-protein vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.717e-16
Identity = 81/326 (24.85%), Postives = 155/326 (47.55%), Query Frame = 0

Query:  129 FTCKQCQRNFIKLNKGNDEKCQKCPRYYLSNEKHDKCFDPYRQEYLVKS---TIYFTAFGLAGFSLAFCVLTLIIFIIYHKTPIVKSS--DFILTIIHLFTSILISAVSVISPHMKPRKFTCFFDTIVAGNLYTFFIAIVLMKSHKILTAFNSMHKLSTKNKRNTILQQWFTILILTISSVVLTIVAMETQPVTVQSRRKILYKIIHLFCR--NVLPKTIQLGFAGLLQVATFIIAYKGRNLPDIFNESISLLYASFASNMSFAVMFI--LLRFKSQDPHFQASIMWLAISLNSSIYILSC-YGKKLFIVLFKKEKNTLAFIRQKT 444
            F C +C       ++ +   C KCP  + SNE H  C      E+L  +    I  T F + G  L   VL   +FI +  TPIVK++  +    ++        S++  I    +P+ +TC       G  +   I+ +L+K++++L  F +    S   K   +  Q+  + + T   +V+ ++ + T P +    +++  +II + C   +++     +G+  LL    F  A+K R LP+ FNE+  + +    S + F +++I  +  + S    F +++  +AI L +S  +L+C +  K++I+LFK  +NT+  +R  T
Sbjct:  563 FECVECPDGEYS-DETDASACNKCPDDFWSNENHTSCI-AKEIEFLSWTEPFGIALTLFAVLGIFLTAFVLG--VFIKFRNTPIVKATNRELSYLLLFSLLCCFSSSLFFIG---EPQDWTCRLRQPAFGISFVLCISCILVKTNRVLLVFEAKIPTSFHRKWWGLNLQFLLVFLCTFMQIVICVIWLYTAPPSSYRNQELEDEIIFITCHEGSLMALGFLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITF----SMLIFFIVWISFIPAYASTYGKFVSAVEVIAI-LAASFGLLACIFFNKIYIILFKPSRNTIEEVRCST 876

The following BLAST results are available for this feature:

BLAST of TCONS_00004825-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004825-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CASR	1.717e-16	24.85	Extracellular calcium-sensing receptor OS=Homo sap...	[more]

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TCONS_00004825-protein (polypeptide) - C. hemisphaerica