TCONS_00004732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004732
Unique NameTCONS_00004732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004732 ID=TCONS_00004732|Name=TCONS_00004732|organism=Clytia hemisphaerica|type=transcript|length=1768bp
GAATATTTTAGTATCTCCCAGCAGATCCTGGCTATAATGCAAGCTTGTAC
GTTGTAGAACACTAGAGTTACCACTTTGATAATTTTactatgttcttatt
ttcaagataaaaacactcaatcaaataattaaaaaatctatACTTAGTTG
ACAAACAAATAAAATCACGATGGCAGCAGGACCCTACAATTATTCTTACA
TCTTCAAATACATCATTATTGGTGATATGGGTGTAGGGAAATCCTGTCTT
CTTCATCAGTTCACTGAAAAGAAATTCATGGCAGATTGTCCACATACCAT
TGGTGTAGAATTCGGGACACGTATCGTGGAAGTAGCTTCACataaaatca
aattacaaaTATGGGATACTGCCGGACAAGAAAGATTTCGAGCAGTGACT
AGAAGTTATTACAGAGGAGCCGCAGGAGCACTCATGGTTTATGATATCAC
AAGAAGAAGTACATACAACCATCTAAGCAGTTGGCTAACTGATGCAAGAA
ACCTCACCAACCCTAATACTGTCATCATAATGATTGGAAACAAATCAGAT
TTAGAAGCACAGagAGATGTAACAtatgaagaagctaaacaattCGCTGA
CGAAAacggtctacttttcctcgaagCTAGCGCTAAAACgggCGACAACG
TAGAAGATGCTTTTTTAGAAACGGCCAAGAAAATTTTCCAGAGCATACAA
GACGGAAGtttGGATTTGAACGCAGCAGAATCAGGTGTACAACACAAACC
GGCCAAGAAAGGTGGCCCCAGCCCCTTCCCACAGGAGAACCCGCAAGGAA
AAGACAGTTGTAACTGCTAGTCTACAATGTTTGGGAGGAGACTACATTGT
CTTCTTCTTCAATAAAATTGTtgtttagtagttttgaaataatttctttg
tatttttgtacCATACCGTTGGATATACTTTTTTTGGAACGAATGAATGa
ctgaatgaatgaattttttgttatgAAATGGACGAAAAAGAACTTTCTGA
CACTGGTTAGAGTGAGCGAGACAAAAATGTGAAGACTTTGATGGCGGCTG
GTAATCCATAAACAAAACATACGAATGAGGACGATAAGAGTCATTGTTAG
GTATATTATTTGAATTATCACTTCCATCGTTCAATACCAATCCCTTTGTA
ATCGACTAACAATTTATACGTCAGGGGAGTTTTTTTATTAATAAAAtgat
tattattatatttttttgttttggatttgtttgattttgcaaaaaatggg
TTCAGGTATCTTTTTAGTTTTgcctttttttacttttatctaTTATTCCC
AAATcaatttattaaaaatcatcaacacaatggaacgaaaaaaattaatt
tattatttCTTGTAACTCTTTACGCTTTATTTTTTTCGTTTGATCCGTTT
CTGTTTCAAATTTTAACGTACTcttaatttttatcaaaactgaAAACCCT
GCGATCGGACTTAGTATTTGAAACTCTCTGTTTGGTCTAGGTGCCAATGG
ATTATAATGTCACATGAAAGAAACTTTAATTCAATTCTAATGCTTTTTCT
CAGACGCAATTCACATAATAagatattctcaaatttctagaGGTCTACTA
AACTTATAGAATCTACTTATTTTAGTTCAGAAAAAAATGTAattgtatgt
caaatttaatTGTATATTGCCAAGGTTATTATTACGTAATCACTTGCCGA
GTAATTATAACTACCTTTCTATACATTTTAAAGATAAATTAAACTAATAA
CTTTGTCATGGTTTTATT
Run BLAST on NCBI

protein sequence of TCONS_00004732-protein

>TCONS_00004732-protein ID=TCONS_00004732-protein|Name=TCONS_00004732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MAAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT
RIVEVASHKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN
HLSSWLTDARNLTNPNTVIIMIGNKSDLEAQRDVTYEEAKQFADENGLLF
LEASAKTGDNVEDAFLETAKKIFQSIQDGSLDLNAAESGVQHKPAKKGGP
SPFPQENPQGKDSCNC
Run BLAST on NCBI

transcript from alignment at sc0000048:51595..55582+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004732 ID=TCONS_00004732|Name=TCONS_00004732|organism=Clytia hemisphaerica|type=transcript|length=3988bp|location=Sequence derived from alignment at sc0000048:51595..55582+ (Clytia hemisphaerica)
GAATATTTTAGTATCTCCCAGCAGATCCTGGCTATAATGCAAGCTTGTAC
GTTGTAGAACACTAGAGTTACCACTTTGATAATTTTactatgttcttatt
ttcaagataaaaacactcaatcaaataattaaaaaatctatACTTAGTTG
ACAAACAAATAAAATCACGATGGCAGCAGGACCCTACAATTATTCTTACA
TCTTCAAATACATCATTATTGGTAAAGTCTTTAGCTTtgaacttcatttt
tgatgAAGAAAGTACCTTGTTACTTAGCTTTCtcaatttattttaaaaga
agGCTGAATTATTCACGAAAATCTAGGAACAAATGCTGAACAATCACCAT
TCTAAGATTCTAGAAACGGGCTAGAAAATACTGATTTCTTAAGCCCCTTT
TTATCCAATAGTCGAATAATGTAAGCATATTAATAACATCCAACACCCCT
AACTAGCCGAAATTCATTGGTACTTATATAAAAGTGTCAAATAATAATTC
AGCGTTCACTTAACTCTTTACAGGTGATATGGGTGTAGGGAAATCCTGTC
TTCTTCATCAGTTCACTGAAAAGAAATGTAAGTTAAACTTCACGAAGAAC
ATATATCATAATGCAGCTAACATATCAAAGTGGTCCAACTATTATCTGGT
TGAAGTgtatttataatcaaataacaCTGAATAACTTTGATTTATTTAGG
CTTTTCGCCTTGTACTCTCTTCCTGACTCTCTTTCAATCTTATGTTCTCA
TGTTCTTCCTGGTTCTGTACTTTAAATGAGTTTTATGGTTACAAAGTATT
TTATATTCTGCTCATTATACAAACGTCTAGAAATCTAActactttttttg
acattttcaacaGTCATGGCAGATTGTCCACATACCATTGGTGTAGAATT
CGGGACACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTAT
GGGATACTGCCGGACAAGAAAGGTAAAGATCTGCCTTACTGCGATATTCT
AATCTCTTTCATTTTGGAGATCGCATCTTgttgaaaaaatcaataaaaat
cgtAGCTCCTTTTTTCATAAAAGTAGATAATGCGAAATTTGATTTCATTA
TACTGAAAACTTCGTGGTCATATCAAATTAATGTTGACATGTGTAATATT
AAATCAACAATCAGCTATTCCTTCATCTGCTTCAactgtattcatgatat
tcatgacgtaatgttttctacggaaagaccctggtttttgccagtagtgg
cgaatttaaactagacaaaagttgtataaaatttgacactactggcaaaa
accgagGTATTTCCATAAAAatcattacgtcatgaatatcatgtaTAACG
GCATCATTTCATCTTTGTTGTCAGATTTCGAGCAGTGACTAGAAGTTATT
ACAGAGGAGCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGT
ACATACAACCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAA
CCCTAATACTGTATGATTATTTTTGGATTAGTTCCTTAATGCAAGGGGAA
AGCTCTTCAGACAAAGCTAGTAAAATCTCGAGGTGCCTTGAGATTAAAAG
TCGACAAAATTTATATGTGTACTGGGCGACCAACCCTGACTTCAAAAGCC
TAACTTGAGCTGACTTGAGAACCGTTTTAAATTTTCCTTTACTGTTCAAa
tggaaaaaatcattttttaaaaatatcattaGCCTTACAAATCCTTACAT
TTTTTTGGGTCAGTCGGTATGCTTGCCAGGAGGAATCAGCTTTACTAGTA
CTACAGCATGTCATGACGtgtaaatattttgtatttttaatgcTTTCAGG
TCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGGTTAGTCAT
CggtttgttgttttgtttgctTCACTATTCGAATATCATCGGAATCTGTT
GTTTCTTTTCTTGTTTTGCCTCACCGGCGTCGAATTTTAAAGAAGTAATT
GTATGAATTTTCATTAGTCATgtcaatgtttttctttttcataaccAGTA
AATAAAGGTgtgcttgaatttttttttaacagagAGATGTAACAtatgaa
gaagctaaacaattCGCTGACGAAAacggtctacttttcctcgaagCTAG
CGCTAAAACGTAAGTTGATAGTGCTTATACACTCCTGGTTGATAGacaga
gtaggagttttacgccaGAATAGAAGCAAGATTTGACGTAGCCTTATAAG
TTGACGGATGATTTTCGAAACAGTTTCATCTTCACAGACTTATTTTCCCT
GgtcaatatatttatttttctaccTATAACATTTTAAGTAGCGTACCCAC
GTAATAACGTACGCAATCTCAAACTGGTTACACTTAATGCCCCTCGTAAT
CAATACTTGAGTTGACCTGGACGGATGTTTGTTTTTCATCAAGTGTAATT
CTACAACTGAAAATCGAACCTCGTTTGACTCCACAATGTTAATAGACATT
GATGGCCATCTTCACCTCGGCGCCACGACGTATCGTTATGTTTTCCCATC
TTCTAAACTTCTCAAAATGTTATAGTACTGACCCATGATTCTTTTAAACT
ACTAATGAATTGAATTATGAtcagaaaaatttgttttattttcattttag
gggCGACAACGTAGAAGATGCTTTTTTAGAAACGGCCAAGAAAATTTTCC
AGAGCATACAAGACGGAAGGTGAATAGAAATTGTTCTCTTTTATTTAGCT
TGGTGTTTCTCCCAAAGCAATTTCGTTTAATGTCTACGATTCATCAAATC
TTATGTCACATGTAAAATTTATATCCTTAAAATACCCCAAGTTTCTCAAC
TACTGTGCAATAGCGCTGCTTGgtcttatgtttttattttgattgattgg
ttacattttaatgtttttgttttgacagtttGGATTTGAACGCAGCAGAA
TCAGGTGTACAACACAAACCGGCCAAGAAAGGTGGCCCCAGCCCCTTCCC
ACAGGAGAACCCGCAAGGAAAAGACAGTTGTAACTGCTAGTCTACAATGT
TTGGGAGGAGACTACATTGTCTTCTTCTTCAATAAAATTGTtgtttagta
gttttgaaataatttctttgtatttttgtacCATACCGTTGGATATACTT
TTTTTGGAACGAATGAATGactgaatgaatgaattttttgttatgAAATG
GACGAAAAAGAACTTTCTGACACTGGTTAGAGTGAGCGAGACAAAAATGT
GAAGACTTTGATGGCGGCTGGTAATCCATAAACAAAACATACGAATGAGG
ACGATAAGAGTCATTGTTAGGTATATTATTTGAATTATCACTTCCATCGT
TCAATACCAATCCCTTTGTAATCGACTAACAATTTATACGTCAGGGGAGT
TTTTTTATTAATAAAAtgattattattatatttttttgttttggatttgt
ttgattttgcaaaaaatgggTTCAGGTATCTTTTTAGTTTTgcctttttt
tacttttatctaTTATTCCCAAATcaatttattaaaaatcatcaacacaa
tggaacgaaaaaaattaatttattatttCTTGTAACTCTTTACGCTTTAT
TTTTTTCGTTTGATCCGTTTCTGTTTCAAATTTTAACGTACTcttaattt
ttatcaaaactgaAAACCCTGCGATCGGACTTAGTATTTGAAACTCTCTG
TTTGGTCTAGGTGCCAATGGATTATAATGTCACATGAAAGAAACTTTAAT
TCAATTCTAATGCTTTTTCTCAGACGCAATTCACATAATAagatattctc
aaatttctagaGGTCTACTAAACTTATAGAATCTACTTATTTTAGTTCAG
AAAAAAATGTAattgtatgtcaaatttaatTGTATATTGCCAAGGTTATT
ATTACGTAATCACTTGCCGAGTAATTATAACTACCTTTCTATACATTTTA
AAGATAAATTAAACTAATAACTTTGTCATGGTTTTATT

Coding sequence (CDS) from alignment at sc0000048:51595..55582+

>TCONS_00004732 ID=TCONS_00004732|Name=TCONS_00004732|organism=Clytia hemisphaerica|type=CDS|length=5208bp|location=Sequence derived from alignment at sc0000048:51595..55582+ (Clytia hemisphaerica)
ATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACATCATTAT
TGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTCACTGAAA
AGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATTCGGGACA
CGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTATGGGATAC
TGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTACAGAGGAG
CCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTACATACAAC
CATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACCCTAATAC
TGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGagAGATG
TAACAtatgaagaagctaaacaattCGCTGACGAAAacggtctacttttc
ctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTTTTTTAGA
AACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttGGATTTGA
ACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGGTGGCCCC
AGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTAACTGCTA
GATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACATCATTA
TTGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTCACTGAA
AAGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATTCGGGAC
ACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTATGGGATA
CTGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTACAGAGGA
GCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTACATACAA
CCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACCCTAATA
CTGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGagAGAT
GTAACAtatgaagaagctaaacaattCGCTGACGAAAacggtctactttt
cctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTTTTTTAG
AAACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttGGATTTG
AACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGGTGGCCC
CAGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTAACTGCT
AGATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACATCATT
ATTGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTCACTGA
AAAGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATTCGGGA
CACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTATGGGAT
ACTGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTACAGAGG
AGCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTACATACA
ACCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACCCTAAT
ACTGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGagAGA
TGTAACAtatgaagaagctaaacaattCGCTGACGAAAacggtctacttt
tcctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTTTTTTA
GAAACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttGGATTT
GAACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGGTGGCC
CCAGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTAACTGC
TAGATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACATCAT
TATTGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTCACTG
AAAAGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATTCGGG
ACACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTATGGGA
TACTGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTACAGAG
GAGCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTACATAC
AACCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACCCTAA
TACTGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGagAG
ATGTAACAtatgaagaagctaaacaattCGCTGACGAAAacggtctactt
ttcctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTTTTTT
AGAAACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttGGATT
TGAACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGGTGGC
CCCAGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTAACTG
CTAGATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACATCA
TTATTGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTCACT
GAAAAGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATTCGG
GACACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTATGGG
ATACTGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTACAGA
GGAGCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTACATA
CAACCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACCCTA
ATACTGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGagA
GATGTAACAtatgaagaagctaaacaattCGCTGACGAAAacggtctact
tttcctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTTTTT
TAGAAACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttGGAT
TTGAACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGGTGG
CCCCAGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTAACT
GCTAGATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACATC
ATTATTGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTCAC
TGAAAAGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATTCG
GGACACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTATGG
GATACTGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTACAG
AGGAGCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTACAT
ACAACCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACCCT
AATACTGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGag
AGATGTAACAtatgaagaagctaaacaattCGCTGACGAAAacggtctac
ttttcctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTTTT
TTAGAAACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttGGA
TTTGAACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGGTG
GCCCCAGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTAAC
TGCTAGATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACAT
CATTATTGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTCA
CTGAAAAGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATTC
GGGACACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTATG
GGATACTGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTACA
GAGGAGCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTACA
TACAACCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACCC
TAATACTGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAGa
gAGATGTAACAtatgaagaagctaaacaattCGCTGACGAAAacggtcta
cttttcctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTTT
TTTAGAAACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttGG
ATTTGAACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGGT
GGCCCCAGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTAA
CTGCTAGATGGCAGCAGGACCCTACAATTATTCTTACATCTTCAAATACA
TCATTATTGGTGATATGGGTGTAGGGAAATCCTGTCTTCTTCATCAGTTC
ACTGAAAAGAAATTCATGGCAGATTGTCCACATACCATTGGTGTAGAATT
CGGGACACGTATCGTGGAAGTAGCTTCACataaaatcaaattacaaaTAT
GGGATACTGCCGGACAAGAAAGATTTCGAGCAGTGACTAGAAGTTATTAC
AGAGGAGCCGCAGGAGCACTCATGGTTTATGATATCACAAGAAGAAGTAC
ATACAACCATCTAAGCAGTTGGCTAACTGATGCAAGAAACCTCACCAACC
CTAATACTGTCATCATAATGATTGGAAACAAATCAGATTTAGAAGCACAG
agAGATGTAACAtatgaagaagctaaacaattCGCTGACGAAAacggtct
acttttcctcgaagCTAGCGCTAAAACgggCGACAACGTAGAAGATGCTT
TTTTAGAAACGGCCAAGAAAATTTTCCAGAGCATACAAGACGGAAGtttG
GATTTGAACGCAGCAGAATCAGGTGTACAACACAAACCGGCCAAGAAAGG
TGGCCCCAGCCCCTTCCCACAGGAGAACCCGCAAGGAAAAGACAGTTGTA
ACTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002680XLOC_002680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004732-exon-sc0000048-1491911889:51595..51815TCONS_00004732-exon-sc0000048-1491911889:51595..51815Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:51595..51815TCONS_00004732-exon-sc0000048-1510915933:51595..51815Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:51595..51815TCONS_00004732-exon-sc0000048-1575043694:51595..51815Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1491911889:52118..52171TCONS_00004732-exon-sc0000048-1491911889:52118..52171Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:52118..52171TCONS_00004732-exon-sc0000048-1510915933:52118..52171Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:52118..52171TCONS_00004732-exon-sc0000048-1575043694:52118..52171Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1491911889:52458..52566TCONS_00004732-exon-sc0000048-1491911889:52458..52566Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:52458..52566TCONS_00004732-exon-sc0000048-1510915933:52458..52566Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:52458..52566TCONS_00004732-exon-sc0000048-1575043694:52458..52566Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1491911889:52969..53104TCONS_00004732-exon-sc0000048-1491911889:52969..53104Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:52969..53104TCONS_00004732-exon-sc0000048-1510915933:52969..53104Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:52969..53104TCONS_00004732-exon-sc0000048-1575043694:52969..53104Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1491911889:53444..53485TCONS_00004732-exon-sc0000048-1491911889:53444..53485Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:53444..53485TCONS_00004732-exon-sc0000048-1510915933:53444..53485Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:53444..53485TCONS_00004732-exon-sc0000048-1575043694:53444..53485Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1491911889:53677..53753TCONS_00004732-exon-sc0000048-1491911889:53677..53753Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:53677..53753TCONS_00004732-exon-sc0000048-1510915933:53677..53753Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:53677..53753TCONS_00004732-exon-sc0000048-1575043694:53677..53753Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1491911889:54245..54313TCONS_00004732-exon-sc0000048-1491911889:54245..54313Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:54245..54313TCONS_00004732-exon-sc0000048-1510915933:54245..54313Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:54245..54313TCONS_00004732-exon-sc0000048-1575043694:54245..54313Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1491911889:54523..55582TCONS_00004732-exon-sc0000048-1491911889:54523..55582Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1510915933:54523..55582TCONS_00004732-exon-sc0000048-1510915933:54523..55582Clytia hemisphaericaexon
TCONS_00004732-exon-sc0000048-1575043694:54523..55582TCONS_00004732-exon-sc0000048-1575043694:54523..55582Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004732-proteinTCONS_00004732-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:51595..55582 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
105.477	104.877	168.331	169.829	120.883	93.8015	118.639	125.366	101.713	102.092	96.8336	97.634	104.884	106.471	94.7184	102.479	88.0136	98.4758	93.7882	89.7889	88.142	86.0925	77.364	76.7637	94.2865	105.475	88.4321	73.9299	83.5289	78.592
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00004732 vs. Swiss-Prot (Human)
Match: RAB14 (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 392.504 bits (1007), Expect = 2.246e-133
Identity = 186/216 (86.11%), Postives = 198/216 (91.67%), Query Frame = 2 
Query:  170 MAAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIVEVASHKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIMIGNKSDLEAQRDVTYEEAKQFADENGLLFLEASAKTGDNVEDAFLETAKKIFQSIQDGSLDLNAAESGVQHKPAKKGGPSPFPQENPQGKDSCNC 817
            MA  PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI+EV+  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII+IGNK+DLEAQRDVTYEEAKQFA+ENGLLFLEASAKTG+NVEDAFLE AKKI+Q+IQDGSLDLNAAESGVQHKP+   G     +  PQ ++ C C
Sbjct:    1 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQ-REGCGC 215
The following BLAST results are available for this feature:
BLAST of TCONS_00004732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB142.246e-13386.11Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
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