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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004681 ID=TCONS_00004681|Name=TCONS_00004681|organism=Clytia hemisphaerica|type=transcript|length=1826bp
GTAGAAGCTGTCGGCACGGCTGATTCTTGAACGTTAATCGAATACGGTAA
ATGCCATACTGCCTACTAATCATTGGCATTTGGCAAAAAGGAGCAAAAGG
ACAGAAGTAGACAGTAGATATTCAGatGACAGTTAAAACTACAATGGCTG
GTATATCACTATCAAATTTACAAGGTGCATTGAATGAGATTGGCTTAACT
GAAAAAGAGTTGTACATTGGTGGTTTATTAGCCGAGTTATTAGTTCACCA
TGAGATATTGAGTGTCTCTTTTATTAACAGTCAATTGAATGGCAAGAAAA
AAGGATTCTCTATCACTTTTGATTTCTTGAGAAAAACCAAGTTTGAGTTG
GCTGTCATCGGGTGTGATTTAAAGATCATGAGAATGAACCCAAATTATGT
TGAAGATGAAAGATTTGTTGGGTTTAGTAAAAGTGACGATTTTTATAATC
AGCTTTTCCAAATCATACAGAAAGATAATCAAGCTTATGTCCAGTTGAAG
AGAAAGCTCATCAACGAAGACAATAACAATACCGCTAGACTGGATGATGT
TTTTACATGGTCTTCTAACAAGTTTAAATTTAACGTCCCGTTTTTATTGA
GAAACAGTCAcaagtttgaaatatttatgGACGAGGATGTATCTTATGTA
AGGCTGGCCGAAGTTCATCAGATGGCAATGCGCATTGAATTTGGTCAAGA
TCAAATTAATGAAATCATTCAAAGTGATAAGAGAAAATTAGTGGTTGAAT
GTCTGAAAAGGTTGCTGGCAAAGTTAGATCATCCTGTAAACCAGGGCACC
TTTCAAGCTTGTATTGATTACGGCTTCCCACCTATTGATAAACTGTTTAT
GCAATGCAATGGTCACCTGTTTGTCTTTGGTGGAGCTGACAGAAAGATTG
CACTAAAGGGAAGTAAAGCTGCAAGAGAAATTCTCAAGTCGTCCCATGCT
AGTCCCCCACAAGGTTATAAATCTGAACCAAAGAAATATAGCACATTTAC
TACAGCACCACATACAACAACACCGGCACCTAAACAGAATCTGGCTTCGA
CCTCACCAATACCAAACAACACTATTCCTCAATTGCCAACTACTGCAATA
CAACAGTTGTCAAGCACTGGAAAATCAATTTTATCAGCTTCTCTTCTATC
AGATGTGGAAAAAGCTTACCAGAAAGGCCAAACTGTTGTTGTGGTAGGAA
AAGATTCAACACTACCAGTAGTATTTCTTACTGAGAATACTTCAAATGTT
ACCAATTTGGAAATGTTAGTTGGACTCAAATCTCAATTGGAATCAGAGAT
CCATAgaagaacttttgcaaaataaaagattttggtataatgaacttttt
actgttttttaaaaattcagaTTTTACAAATGTAATTTTTCATTATCTAT
TCTTGTATGATACTTTATATGAAtattgtatattataaaacctAGACCTG
TACCTGGAAATTAAGATCTTACTCCCTTATAACCTGCAATGACATTTTTT
TCTTGGATGAAATTTCTAAAGCATAGCTTTataaaaattcactatttttT
GTAAGTGTCTCCAAAGCTTGCTCTTATCAACTTGTTTTCTTCCATTACAG
TTCGCCTTTTTGTAACCtttattaaaaagcaaatttctTAAAGCCTGTTG
AATGCCTCCAGGGTCTAGGTTCAGGTTTTGCTTTTATAGTATGCCAtcta
ttttatcaaattttgattattatttAGACATTTTATTTAACGAAActtag
aaaatttagaattttaagcactgttttggattttcaaatttaccaaaata
aaaTTAGTGAGATATTTCTCTTATAG Run BLAST on NCBI transcript from alignment at sc0000047:328482..336987- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004681 ID=TCONS_00004681|Name=TCONS_00004681|organism=Clytia hemisphaerica|type=transcript|length=8506bp|location=Sequence derived from alignment at sc0000047:328482..336987- (Clytia hemisphaerica)
GTAGAAGCTGTCGGCACGGCTGATTCTTGAACGTTAATCGAATACGGTAA
ATGCCATACTGCCTACTAATCATTGGCATTTGGCAAAAAGGAGCAAAAGG
ACAGAAGTAGACAGTAGATATTCAGGTATGGTAAGTTTTTCTCTACAAAT
TGTTGTTTTCTTCATTGAATTTGACCTTTAAAAAGTAATTCAGCGATGAC
CTAAACATGATGCAAAGCTATTATTCATATAAACTGCATTTATAGCTAGA
TAGCTACTAGAAGAAAAACTCTGAGCTCCGCCGCAAGAACCAAAATCTAT
TATTGCCACGGGAGATAAATCCCATGCAGACGAAAGATGCCAAAGCAAAA
TACCTAAGAAGAAAGTTCTCTCCAAAAAAATAAATTCAGGCGGTGTCAAC
CAAACCCTCCTTGAACCATTTTCTTAATTAAAAAATCAAAATCAAAATAA
AGCTTTTCCATGACCAAATTCTGATGGGACACCCTCCTTTCTGTGTCGGA
ATTATCAATTATCAATTAGACAAGGGATGATTAATATGAAAGCTTGAATC
ACTGATTGAAATAGGATTATTCCTCTTTGACCACTAAGCAAAGAAAAACA
GTTTCAACCTTTCTATAAATTTCAGCTGAGAAAAAGGGTGTTGGAATTAG
AGGAGGGGTGTCGACATTAGACCAAGTTACGGCACCTATTGAACTTATTA
CAAAAATTTCTTAACTTGATTTTAGTGCGATTAGCTAAAGTTTCCAAACG
GTGTCAATCGAACGAATCGAACGCCAAATCAATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATGCAT
GATACAGTAATTATGCATGGCTCTATCATTGTTCTTATGGCTGGACTACA
TAATTATTCAACAGGACGTCCTCTTTGAAAAAAGGTCTATTGAACGCGCA
ATTGAACGCAATCGAATAATTGTAATTCTATTGTCAAACGCAATAACGCA
ATCGAACATTACCCAGGATTTGCCTTGCAATTGCTTCGATTACATTCGAT
TGTATTCGATTGTATTCAATTACGACGTTCGATAGACCTTTTTTTAAAGA
GGCAGTTGAATAATTATGTACTCCAGCATAAAAACAATGATACAGCCATG
CATAATTACTGTATATACAGTATCATGCATATTTTAAAAATTATGCATGG
CTGTATCATTGTTTTTATGCTGGAGTACATAATTATTCCTCTATTTGATT
CAATTTTAGATTTTATTCGCTTTGGTACGATACTTAAGCGCTCGGCTGCC
CATGCTAAAAAGCCCTAACAGAGTGATCCAATTTAATTTAATCGCAATCA
AACTCATTGAACATAATCTTCAGTGCGTCACAAACAGCCATATAAACAAA
ACTCAACATTCTCACAAAAGTTGTCTTTTTGATTTACCAAACATTCGTTC
ACTTCACAATAATTTATGTAATTGCAATTTTGTTCAGTCCACAGTCGGCT
TCAACATATACACGTGTTTTTATTTATGTGACCGAAGTGCCTACTAAAAC
AATCCGGGAGTAAGTGGCGAAGCAACACAGCAGATTGTTTGTAAAGTAAA
GAAATATCTTTTGGCATTGACAATCAAATATAAATATATTATATTATATT
TCCTTAATTCAAAAATCACAAATTCATTTTTCATTCGCGAAAAAAAAAAA
ATAATGAATTAATATTACATACTAAGACGCCCCCGTCTTTTACTCTCGTT
TAATTTCCTTTACTCTCGTTTAATTTCCAATCTCGGAACGGGCAAAATGC
CTGTCCGCCCAATATCCACCCAATCAGCTTAAATTTGCTTTCATTGTCCT
TTGACTTTCAAAAAATAGTATTTAAAAATTATGAATTTATAATAATTACA
AAAAACAAAAAGTTTGATACTTCATTAGGGAAATATTCAATAAATTCCTA
GTTTCAATTTTCAGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCGCAATTTTTGCGTCACACAAACTTTCTCGGCCGCTCGTAATAATTATG
CATTGCCAAATTTGGTTCTCCATTGTCAAGTCAGGATCGATGGTGAGGTC
ACCTAAGCATAAAAAAGAAAAGATTTCATCAGTTTTATGCATATATTAAT
TTGCGAGATATTCTATTCCCCGTGTGAGCGCACTTCTCGTAGACTAGTCG
GAATACTTTCTTTTACTCGCGGGATTGATGGTAACTTTTCATCTTCGTTA
TTTTTAAAGTGAAGCACAACCGAAAAAAACACGAAAACTTCAGAAAGTAG
CGTATTTCCAGTGAGTAAACGATTCTGACAATTAACAAAATTGATGATAA
TGATTTTTTTCGGTCAGGCAAATGTCTCGTATTTGGGGTTCTAGTCTTGA
CCCCTAAGCCTACGCGAGATTAAAGCGTTTGGGTAAACAAGACAAAACTG
GTGTTTTGAACAGCCCTGTGAATTCAGACAAAATTTTGCCGACCTAGAGG
TCATTTTAGGTCGGCAAAGCCGTCCTAAGTAGCTTGTTTACGTCGGCAAA
GACAAAATAGGAAGAAAATTAACGAACTAACAAAATCAGCTGCTCTATAA
TTGTGTTATTAAGTTTTATTTTTTATAAAGAGAATGGAATGAGGCTTGAT
TATCATGTGTTATCAAATGATAACACAATTAGATTAACCTAACAAATAAT
ATTTTTCCTCTTTAGGTCAGCTTTGCTGACCCAAAACATTTCTTTTGTGG
GCACGCCGACCTAGAGTGTAAATTACGTCGGCAAATAAAAGCCGACTTCA
GCTCAACTTACGTTGGCTTTCAAGTCGGCATTGCCGAATGCCGACCTGGA
TTCACAGGGCTGTTTGAAGCGCTTCCGTGCAATCCAAATATCGCTGTTTG
TGACGCACTGATCTTAATCGAACGAAATTGGAATGTAATTGACAATCAAT
CAAACCAATCGAACATAGTCAACTATCAATCGAACCAATCTAACTATCGA
ATATTACCCAGGAATCGGCCTTTCGATTGAGATTCGAGTAAGTTCGACAA
TCAAATTGCAATTATTCCCTTGCGTTTGATTACGTTCGATTGGTTCGATT
GCAATTTTTGTTCGAAGTTTTTTGATTGACACCGTCTGTAATTCAATGAA
GTTCGATTGAAGGTAAATAGGGTTCAATTGATGTTTGATGAGTCGAATGC
CGATGCGAATTAGAATGACTTTGACTGTACTTTAAAAACAAATATTAAGT
ACCTAAAAGCAGAGAGTCACAGAGCTGTATTCCTTTTATTACACACCGCA
AACGTCTTAATCTCCAAGTGTAGAAGTTATCATGTGATCGTGGCGCGTTC
CTTTGTGGATTCAGGCTTTAGGCCCATAACTTTTGATCTAGAAAAGTTGG
GACTTTGGTGTAATACACTTTTTGCTCAGTTTGAAGAGCTCTATTGTGTG
ATATAGGTATTTTTTTAATTTGAAGACCCCCCCAAAATCATGAATTTCCA
GGCCTTGCAATTTTGCCTGGAAACGCAAAAAATCGCCAATTACTCGTTAC
TTGCACGACAATATCGTGGAAACTTTTTGATTTTAGAATCTACATATACT
AATTCGCGAGTTTCCACCAAAAAAAGTTAGTTCTAAGATGTGTGTCACGA
AATGAAACATTTATCAACCTCAGCAGCGGGACTAAAAGAATGTGTGATGT
TATAATTACTGCTTTCAGTTTGCGTGTTTTGAAAGTTTGCTGTGTGTACT
CCTTCATGGAATTTTTTAATGGCATGAAAATATGTTTCATTTTTACGTAA
CTTTGAACCCTTTTAATTTTTTTTCTATGTATGCTAAAGCGTTCCAGTTT
TTACTAAAAGAAAGACCGCGATTTCAGCTTTCCAGTGCTATAACACTGTG
GACATGGGCTAGGCGGCAGATTGGTAAATTCCCAGAATGTTTTTGCAACA
TTTCAAAATTTGTCTGCTGCGGACGGAAAAAAGTTGCAACTCTTGATGAA
CAAATGTTTCTGGAAATAATAAAACATATTTGAAAGCTGAAACTTTGTAT
ATTTATCAGAAAAAGGGTGTTGAGGAATTTAAAAAATCACATCAGCTAAT
TCTGGTTCTTTCATTTTCATGTAATTTTATCACTTTGTTGCTTCTCTAGC
ATAGGAATGTCCCTAAAAAAAGTATTTATTTCTGCTGATGTGGATTTTAT
TTTTATTTTCAGGTGATGCCAAAAGTGCATTAATGTTTACACATCTGAAA
TAAAAATTAAAAAACTGTCCACTTTGCTTGTGCGAGAAATTCGAAATTGC
CAATTATCCAGGCAAAGACTTACTAAATAAAATAAATGGACTGAAATTGT
TGCAAACTGTCAACATCGATATTAACATTTATTCGATAAAAACATACTGG
CCTTTGTCAAAAGATCTTTCATAGTATTAAGAAAATAAAAATGTTTTGCC
TAAGATTCCCTTTCCCACACTAAGATTCTCCAGAAATTTCCGGGATTTTT
TTGCTATTTTTCCTGCCACGAGGTTGGAAAAAGTTTTCTTCTAAATAAAG
GTGGGGAAAATCTTGTGTTTATTTACGAAACAGTCACTTTCCAAAGCTCT
TGTTTCAACTACCTGGAGCTCTGGTCTTTTTCCGGTAGAAGAGTGACAGT
TGATATTCAATGTACTTGAATGGGATAATTTTTTTTTGAACCTACCTCCG
GGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTCCGTTCGTCC
GTCCGTCCGTCTGTTACTAGCTTTTCTCAGGATTGGCTCATTAGTTTTTT
CTGATTTTTTGCACAATGATGCAAAATGGCAATGCCCAGAACGTGACGGA
GCCCGATTTTTGAGAAAAAAATTATTTGGGCAAATTTGGGCCAAAAACCT
CCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTT
TTTCTGATTTTTTGTACAAAGATGGAGGGCAAAATTCTCTAAAGAATGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGATTTTCGAAAGAAAATATATTTGGGCAAATTTGGGCCAAAA
ACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTAT
TTTTTTCTTATTTTTTGTACAAAGATAGAGGGCAAGATTCTCTAAAGAAT
GGCTGAAGTGTTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAAACGGAT
TTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTT
TCTCAAAGTTGACTCATTACTTTTTTCTGATTTTTTGCACAATGATGCAA
AATGGCAATGCCTAAAATGTGACGGAGCCTGATTTTCGAAAAAATATATA
TTTCGGCAAATTTGGGCCAAAAACTGCCCAAAAATAGGGATTTTGGGCCT
GAATGGTTTAAGTGATTTTCGTATTTGGGGAAATTCCATTTTACTATTTT
ACATTATTCAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAA
TTATTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGT
CCATTCAGCATGTTGCTTGTTTGTTTTTTTTTAATGGGATAAATTTTCTC
CTGAATTAAATTTTGCAGATTTTTTGATTTTGTTCTCAACCCATGAAATT
AAGTCCCAATGGAAATTGGAAAGGTGCTTTCTGTGAAGAATTTTCTATCT
ATTAAAACTCAAAAAAAATGTCAAATAACTAATTTTAAAATGTTTACTGG
TATCAAAGAAGCGCTAATAATGCCTATTTCAACAATCAACATGCACAATT
TGACAGTTTTTCTGCAGATATAAGTGTAATTAGACATCATGCCTGACACT
CCGGCTACATAAACATAGAAATGTTCTACACAACCGTGCATTGATGATTG
TAGGATGATTGTGTACCAATTCTCCCTTAAAACTCAACTTAACTTGTAAG
CAAATGTGTTGTTGTTTGTGATTGAGTCAAACTGGAAAGTGAAAACTGAC
AATGAAGGGCGAGGCTTTTGGAACTTGTTTGCGCAATAACACTTGCTCAA
ATTCGTTTGAATTCAATCAAAGTCAATAATAACCAGTTAAAGGTTATTGT
TTATTCAAACAAATCTGTTTGAAAGTTTACAATTCTATTTGAAAACAACT
TTGGTCGTCATGTCTTTAGGCTAGCGCTCCTTTAAATCTTGAAAAGATTA
AAAATGTTTCAAAAATCTTTTCAGAATGTGAAATTCCTTTTTTTCCATTT
TTCAGATGACAGTTAAAACTACAATGGCTGGTATATCACTATCAAATTTA
CAAGGTGCATTGAATGAGATTGGCTTAACTGAAAAAGAGTTGTACATTGG
TGGTTTATTAGCCGAGTTATTAGTTCACCATGAGATATTGAGTGTCTCTT
TTATTAACAGTCAATTGAATGGCAAGAAAAAAGGATTCTCTATCACTTTT
GATTTCTTGAGAAAAACCAAGTTTGAGTTGGCTGTCATCGGGTGTGATTT
AAAGATCATGAGAATGAACCCAAATTATGTTGAAGATGAAAGATTTGTTG
GGTTTAGTAAAAGTGACGATTTTTATAATCAGCTTTTCCAAATCATACAG
AAAGATAATCAAGCTTATGTCCAGTTGAAGAGAAAGCTCATCAACGAAGA
CAATAACAATACCGCTAGACTGGATGATGTTTTTACATGGTCTTCTAACA
AGTTTAAATTTAACGTCCCGTTTTTATTGAGAAACAGTCACAAGTTTGAA
ATATTTATGGACGAGGATGTATCTTATGTAAGGCTGGCCGAAGTTCATCA
GATGGCAATGCGCATTGAATTTGGTCAAGATCAAATTAATGAAATCATTC
AAAGTGATAAGAGAAAATTAGTGGTTGAATGTCTGAAAAGGTTGCTGGCA
AAGTTAGATCATCCTGTAAACCAGGGCACCTTTCAAGCTTGTATTGATTA
CGGCTTCCCACCTATTGATAAACTGTTTATGCAATGCAATGGTCACCTGT
TTGTCTTTGGTGGAGCTGACAGAAAGATTGCACTAAAGGGAAGTAAAGCT
GCAAGAGAAATTCTCAAGTCGTCCCATGCTAGTCCCCCACAAGGTTATAA
ATCTGAACCAAAGAAATATAGCACATTTACTACAGCACCACATACAACAA
CACCGGCACCTAAACAGAATCTGGCTTCGACCTCACCAATACCAAACAAC
ACTATTCCTCAATTGCCAACTACTGCAATACAACAGTTGTCAAGCACTGG
AAAATCAATTTTATCAGCTTCTCTTCTATCAGATGTGGAAAAAGCTTACC
AGAAAGGCCAAACTGTTGTTGTGGTAGGAAAAGATTCAACACTACCAGTA
GTATTTCTTACTGAGAATACTTCAAATGTTACCAATTTGGAAATGTTAGT
TGGACTCAAATCTCAATTGGAATCAGAGATCCATAGAAGAACTTTTGCAA
AATAAAAGATTTTGGTATAATGAACTTTTTACTGTTTTTTAAAAATTCAG
ATTTTACAAATGTAATTTTTCATTATCTATTCTTGTATGATACTTTATAT
GAATATTGTATATTATAAAACCTAGACCTGTACCTGGAAATTAAGATCTT
ACTCCCTTATAACCTGCAATGACATTTTTTTCTTGGATGAAATTTCTAAA
GCATAGCTTTATAAAAATTCACTATTTTTTGTAAGTGTCTCCAAAGCTTG
CTCTTATCAACTTGTTTTCTTCCATTACAGTTCGCCTTTTTGTAACCTTT
ATTAAAAAGCAAATTTCTTAAAGCCTGTTGAATGCCTCCAGGGTCTAGGT
TCAGGTTTTGCTTTTATAGTATGCCATCTATTTTATCAAATTTTGATTAT
TATTTAGACATTTTATTTAACGAAACTTAGAAAATTTAGAATTTTAAGCA
CTGTTTTGGATTTTCAAATTTACCAAAATAAAATTAGTGAGATATTTCTC
TTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004681-exon-sc0000047-1575043694:336863..336987 | TCONS_00004681-exon-sc0000047-1575043694:336863..336987 | Clytia hemisphaerica | exon |
| TCONS_00004681-exon-sc0000047-1575043694:328482..330182 | TCONS_00004681-exon-sc0000047-1575043694:328482..330182 | Clytia hemisphaerica | exon |
| TCONS_00004681-exon-sc0000047-1510915933:336863..336987 | TCONS_00004681-exon-sc0000047-1510915933:336863..336987 | Clytia hemisphaerica | exon |
| TCONS_00004681-exon-sc0000047-1510915933:328482..330182 | TCONS_00004681-exon-sc0000047-1510915933:328482..330182 | Clytia hemisphaerica | exon |
| TCONS_00004681-exon-sc0000047-1491911889:336863..336987 | TCONS_00004681-exon-sc0000047-1491911889:336863..336987 | Clytia hemisphaerica | exon |
| TCONS_00004681-exon-sc0000047-1491911889:328482..330182 | TCONS_00004681-exon-sc0000047-1491911889:328482..330182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:328482..336987 - |
Blast
The following BLAST results are available for this feature:
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