TCONS_00004597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004597
Unique NameTCONS_00004597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004597 ID=TCONS_00004597|Name=TCONS_00004597|organism=Clytia hemisphaerica|type=transcript|length=1381bp
cacaGCGCTTTAAACTCCAACTTCTAGTGCAAACTCCACACTCCTGCCTT
GAAATACATTTAGGAACGCGACAAAACTTTCCTGTGTATTCATACTCGCA
CTCACATTTATATTCAGTTGGACTTAGTTCTTTACAAGTTCCATGTTTGC
CGCAAATAGTGTCATTACAAAGGCCACAAGTGTGTGTAAGAAAACAGTTG
GCTTTATTAATTTCACAAACTCTACCAGTGTAACCGTCGTCACAGTTGCA
GTGGTATCCTGTTTCGTTACTCGCTTGACATTCGCCACGCAAATTACAAG
GCTCAATAGGACATAAATTGCATTTAGAATCCTCAGAGATTTCAAAGATA
CGGTTTGTAAAATCGGTGAGATTTCTTTGTTCAAGATTCTTTTCATCCAC
ACACGAGCCAACAATACTGTCTTTGTTTTGCATCAGGTTCAAGGTGATTG
TTAGATTGCAAGAACATTTAAGATCATTACTTGATAaatcgaattttttc
aaagtagaGGCGTCGCTGAAGATACCGTATGGTAAACTGACTAAAGAGTT
GTTTCGAAGATTCAACTCTAttaatttttcaagcatatTTAAGGCGGCTG
GTATTTTTGAGATTCTATTGTTAGCAAGATTCAAGTGTCGAATCAATCCT
GATGAGTCGAGTATGTCATTCGTTGGGAATTCTGTAATGTGATTATCTGA
TAAATCTAAGGCTGCAAATTTTACATTCTCCATATTTCTTGTATTGAAAG
TCTCAATTGGATTTCCTTTCAGCACCAGTTTATGAATCAAGAATTCACCA
AGTAAGGTGATATTTTCAGTATTCGACAGAGCATTGTAACTTAAATCCAA
CAAAGTCAGTCCTTCAGTATTGCCATGTAGCACCAACTTTTCAATATTAT
TGTGACTCAAAATAAGACTACCAGGATCTTGAACTCCAGCCAAATTGATT
TTAGCACTTCGAAAATTGTTGCCTCGTAAATCTAAAATCCAATTTGAATG
TTGATACTTGGGTCCAAATGTTTGATTTAAACAACTGTATGAAGCATTAA
GAATTCTTATACCATGCCAGGAGGGAAGTCGCATCGAAAGCCCTCCTTTA
ACAAAGCAATTTCCTGAAATGTCAATTTCATCAAAACTCTGATAGCcacc
aaaagaaaaatttcttaatcctaaatttttaagttttaatacTTTCAAAA
ATGGTATGttgtaagaaaaatattgaTCTTTGGTAACAATGAATTCTCCT
CCAAAAGGATTGAAGCTTAAATCAAGATATTTCAATCTTTTAAGATATTC
AAAGGGGGATGGATCAGTGACATTTTTCAATAGTAAGTTCATGCCAGGTA
AAGTGCTGATGTTTGTCCCTTGCAATTTTAA
Run BLAST on NCBI

protein sequence of TCONS_00004597-protein

>TCONS_00004597-protein ID=TCONS_00004597-protein|Name=TCONS_00004597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
LKLQGTNISTLPGMNLLLKNVTDPSPFEYLKRLKYLDLSFNPFGGEFIVT
KDQYFSYNIPFLKVLKLKNLGLRNFSFGGYQSFDEIDISGNCFVKGGLSM
RLPSWHGIRILNASYSCLNQTFGPKYQHSNWILDLRGNNFRSAKINLAGV
QDPGSLILSHNNIEKLVLHGNTEGLTLLDLSYNALSNTENITLLGEFLIH
KLVLKGNPIETFNTRNMENVKFAALDLSDNHITEFPTNDILDSSGLIRHL
NLANNRISKIPAALNMLEKLIELNLRNNSLVSLPYGIFSDASTLKKFDLS
SNDLKCSCNLTITLNLMQNKDSIVGSCVDEKNLEQRNLTDFTNRIFEISE
DSKCNLCPIEPCNLRGECQASNETGYHCNCDDGYTGRVCEINKANCFLTH
TCGLCNDTICGKHGTCKELSPTEYKCECEYEYTGKFCRVPKCISRQECGV
CTRSWSLKRC
Run BLAST on NCBI

transcript from alignment at sc0000045:633087..634467

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004597 ID=TCONS_00004597|Name=TCONS_00004597|organism=Clytia hemisphaerica|type=transcript|length=1381bp|location=Sequence derived from alignment at sc0000045:633087..634467 (Clytia hemisphaerica)
TTAAAATTGCAAGGGACAAACATCAGCACTTTACCTGGCATGAACTTACT
ATTGAAAAATGTCACTGATCCATCCCCCTTTGAATATCTTAAAAGATTGA
AATATCTTGATTTAAGCTTCAATCCTTTTGGAGGAGAATTCATTGTTACC
AAAGAtcaatatttttcttacaaCATACCATTTTTGAAAgtattaaaact
taaaaatttaggattaagaaatttttcttttggtgGCTATCAGAGTTTTG
ATGAAATTGACATTTCAGGAAATTGCTTTGTTAAAGGAGGGCTTTCGATG
CGACTTCCCTCCTGGCATGGTATAAGAATTCTTAATGCTTCATACAGTTG
TTTAAATCAAACATTTGGACCCAAGTATCAACATTCAAATTGGATTTTAG
ATTTACGAGGCAACAATTTTCGAAGTGCTAAAATCAATTTGGCTGGAGTT
CAAGATCCTGGTAGTCTTATTTTGAGTCACAATAATATTGAAAAGTTGGT
GCTACATGGCAATACTGAAGGACTGACTTTGTTGGATTTAAGTTACAATG
CTCTGTCGAATACTGAAAATATCACCTTACTTGGTGAATTCTTGATTCAT
AAACTGGTGCTGAAAGGAAATCCAATTGAGACTTTCAATACAAGAAATAT
GGAGAATGTAAAATTTGCAGCCTTAGATTTATCAGATAATCACATTACAG
AATTCCCAACGAATGACATACTCGACTCATCAGGATTGATTCGACACTTG
AATCTTGCTAACAATAGAATCTCAAAAATACCAGCCGCCTTAAatatgct
tgaaaaattaaTAGAGTTGAATCTTCGAAACAACTCTTTAGTCAGTTTAC
CATACGGTATCTTCAGCGACGCCtctactttgaaaaaattcgattTATCA
AGTAATGATCTTAAATGTTCTTGCAATCTAACAATCACCTTGAACCTGAT
GCAAAACAAAGACAGTATTGTTGGCTCGTGTGTGGATGAAAAGAATCTTG
AACAAAGAAATCTCACCGATTTTACAAACCGTATCTTTGAAATCTCTGAG
GATTCTAAATGCAATTTATGTCCTATTGAGCCTTGTAATTTGCGTGGCGA
ATGTCAAGCGAGTAACGAAACAGGATACCACTGCAACTGTGACGACGGTT
ACACTGGTAGAGTTTGTGAAATTAATAAAGCCAACTGTTTTCTTACACAC
ACTTGTGGCCTTTGTAATGACACTATTTGCGGCAAACATGGAACTTGTAA
AGAACTAAGTCCAACTGAATATAAATGTGAGTGCGAGTATGAATACACAG
GAAAGTTTTGTCGCGTTCCTAAATGTATTTCAAGGCAGGAGTGTGGAGTT
TGCACTAGAAGTTGGAGTTTAAAGCGCtgtg

Coding sequence (CDS) from alignment at sc0000045:633087..634467

>TCONS_00004597 ID=TCONS_00004597|Name=TCONS_00004597|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at sc0000045:633087..634467 (Clytia hemisphaerica)
TTAAAATTGCAAGGGACAAACATCAGCACTTTACCTGGCATGAACTTACT
ATTGAAAAATGTCACTGATCCATCCCCCTTTGAATATCTTAAAAGATTGA
AATATCTTGATTTAAGCTTCAATCCTTTTGGAGGAGAATTCATTGTTACC
AAAGAtcaatatttttcttacaaCATACCATTTTTGAAAgtattaaaact
taaaaatttaggattaagaaatttttcttttggtgGCTATCAGAGTTTTG
ATGAAATTGACATTTCAGGAAATTGCTTTGTTAAAGGAGGGCTTTCGATG
CGACTTCCCTCCTGGCATGGTATAAGAATTCTTAATGCTTCATACAGTTG
TTTAAATCAAACATTTGGACCCAAGTATCAACATTCAAATTGGATTTTAG
ATTTACGAGGCAACAATTTTCGAAGTGCTAAAATCAATTTGGCTGGAGTT
CAAGATCCTGGTAGTCTTATTTTGAGTCACAATAATATTGAAAAGTTGGT
GCTACATGGCAATACTGAAGGACTGACTTTGTTGGATTTAAGTTACAATG
CTCTGTCGAATACTGAAAATATCACCTTACTTGGTGAATTCTTGATTCAT
AAACTGGTGCTGAAAGGAAATCCAATTGAGACTTTCAATACAAGAAATAT
GGAGAATGTAAAATTTGCAGCCTTAGATTTATCAGATAATCACATTACAG
AATTCCCAACGAATGACATACTCGACTCATCAGGATTGATTCGACACTTG
AATCTTGCTAACAATAGAATCTCAAAAATACCAGCCGCCTTAAatatgct
tgaaaaattaaTAGAGTTGAATCTTCGAAACAACTCTTTAGTCAGTTTAC
CATACGGTATCTTCAGCGACGCCtctactttgaaaaaattcgattTATCA
AGTAATGATCTTAAATGTTCTTGCAATCTAACAATCACCTTGAACCTGAT
GCAAAACAAAGACAGTATTGTTGGCTCGTGTGTGGATGAAAAGAATCTTG
AACAAAGAAATCTCACCGATTTTACAAACCGTATCTTTGAAATCTCTGAG
GATTCTAAATGCAATTTATGTCCTATTGAGCCTTGTAATTTGCGTGGCGA
ATGTCAAGCGAGTAACGAAACAGGATACCACTGCAACTGTGACGACGGTT
ACACTGGTAGAGTTTGTGAAATTAATAAAGCCAACTGTTTTCTTACACAC
ACTTGTGGCCTTTGTAATGACACTATTTGCGGCAAACATGGAACTTGTAA
AGAACTAAGTCCAACTGAATATAAATGTGAGTGCGAGTATGAATACACAG
GAAAGTTTTGTCGCGTTCCTAAATGTATTTCAAGGCAGGAGTGTGGAGTT
TGCACTAGAAGTTGGAGTTTAAAGCGCtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002591XLOC_002591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004597-exon-sc0000045-1491911889:633087..634467TCONS_00004597-exon-sc0000045-1491911889:633087..634467Clytia hemisphaericaexon
TCONS_00004597-exon-sc0000045-1510915933:633087..634467TCONS_00004597-exon-sc0000045-1510915933:633087..634467Clytia hemisphaericaexon
TCONS_00004597-exon-sc0000045-1575043694:633087..634467TCONS_00004597-exon-sc0000045-1575043694:633087..634467Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004597-proteinTCONS_00004597-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:633087..634467 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121084	0.0885573	0.274196	0.183777	1.72407	1.41937	0.844473	1.38452	1.10885	1.2694	3.6031	0.760228	7.37375	3.81058	0.640045	3.98398	0.367151	0.631819	0.514862	1.38859	0.146339	0.128482	0	0.0315548	0.130003	0.174037	0.126899	0.132894	0.0335986	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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