TCONS_00004588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004588
Unique NameTCONS_00004588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004588 ID=TCONS_00004588|Name=TCONS_00004588|organism=Clytia hemisphaerica|type=transcript|length=1135bp
gaaaaattttcgaaaaattaattagcgccccctccggctattaggtaccc
gacaGTATTTATTTTGTAAGTTTATTTGTCCATTTTATCGGGTGTAGACT
ATTTAACGCCTTTTTGGAAGATGTTGGATGGTTAAGAATATGTTCTACTC
TTACCATCACATACAGAAAACGTATTCGTATCGTAGAATCCGTCATAATC
ACGTCAAGTCGTCAAATTAAACGACACCGACTCGTCTTTTTCTCCGACGA
AAGCAAAGGTAAACAGTTACAACCGCACTCAAAACTGTCAACGCCAAAGT
TACAACAACGGCAATCAAAACTGGCTTCTTTAGCACCGGATCTGGAGCGT
TTCCCTCCTGGGATGTTTTCCCACTTCCTATCTCACAGTTTTGTCCTGAG
TATCCACCGACACACAAACAGTGATATTTATCTGAAGTTTCATCAGGTTG
GCAAGTCCCATTGTTTTGGCAAGGGTTGTTGAAATAACAAGCTTTTTCCA
TTTCACATTTCTCTCCATGAAATCCTGAACTGCAGTTACATTTGAAAGAA
TATTGGTCACACTTTTTCTGTAGAACAATTATTTCCGAACAATTACTCTT
GATTTGCTGACAGCTTCCATTATTCGCACAAGCCTGATCAAAACATGGAT
CTTCAAATTGACAATATTCTCCAAAGAGTTTGTCTCCACACAGGCATATG
TATGTCTCATTTCCATTGGCCTGGCATGTCGAGTTATTTCTGCAAAGGTT
TCCCCAACACTGATCTTTGAATTGACAAAATTCTCCAAAGAGTTTGTCTC
CACACAGGCATATGTATGTCTCATTTCCATTGGGCTGGCATGTCGAGTTA
TTTCTGCAAAGGTTTCCCCGACACTGATCTTGAAATTGACAAAATTCTCC
ATAAAACTGATCTCGACACACACATTTGTATCGATTCCAAAGGGGTTGGC
ATGTTGCATTATTCTGACATTTGTTCAAAGAACAGATTGTGCAATTTAAC
AAATTTTTCTCTAAGAAGAGTTTAGTTTCTGTTTCTTTTAAGCTGGTTGG
TGTTTCGCATTCTCCTTCGATACTAACATGCTCTAACGATCTGTAATTGT
GGTAGAATTGACAGTCACAATTTAAAGGGTTACCC
Run BLAST on NCBI

protein sequence of TCONS_00004588-protein

>TCONS_00004588-protein ID=TCONS_00004588-protein|Name=TCONS_00004588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
GNPLNCDCQFYHNYRSLEHVSIEGECETPTSLKETETKLFLEKNLLNCTI
CSLNKCQNNATCQPLWNRYKCVCRDQFYGEFCQFQDQCRGNLCRNNSTCQ
PNGNETYICLCGDKLFGEFCQFKDQCWGNLCRNNSTCQANGNETYICLCG
DKLFGEYCQFEDPCFDQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCN
CSSGFHGEKCEMEKACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNC
EIGSGKTSQEGNAPDPVLKKPVLIAVVVTLALTVLSAVVTVYLCFRRRKR
RVGVV
Run BLAST on NCBI

transcript from alignment at sc0000045:328587..329721

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004588 ID=TCONS_00004588|Name=TCONS_00004588|organism=Clytia hemisphaerica|type=transcript|length=1135bp|location=Sequence derived from alignment at sc0000045:328587..329721 (Clytia hemisphaerica)
GGGTAACCCTTTAAATTGTGACTGTCAATTCTACCACAATTACAGATCGT
TAGAGCATGTTAGTATCGAAGGAGAATGCGAAACACCAACCAGCTTAAAA
GAAACAGAAACTAAACTCTTCTTAGAGAAAAATTTGTTAAATTGCACAAT
CTGTTCTTTGAACAAATGTCAGAATAATGCAACATGCCAACCCCTTTGGA
ATCGATACAAATGTGTGTGTCGAGATCAGTTTTATGGAGAATTTTGTCAA
TTTCAAGATCAGTGTCGGGGAAACCTTTGCAGAAATAACTCGACATGCCA
GCCCAATGGAAATGAGACATACATATGCCTGTGTGGAGACAAACTCTTTG
GAGAATTTTGTCAATTCAAAGATCAGTGTTGGGGAAACCTTTGCAGAAAT
AACTCGACATGCCAGGCCAATGGAAATGAGACATACATATGCCTGTGTGG
AGACAAACTCTTTGGAGAATATTGTCAATTTGAAGATCCATGTTTTGATC
AGGCTTGTGCGAATAATGGAAGCTGTCAGCAAATCAAGAGTAATTGTTCG
GAAATAATTGTTCTACAGAAAAAGTGTGACCAATATTCTTTCAAATGTAA
CTGCAGTTCAGGATTTCATGGAGAGAAATGTGAAATGGAAAAAGCTTGTT
ATTTCAACAACCCTTGCCAAAACAATGGGACTTGCCAACCTGATGAAACT
TCAGATAAATATCACTGTTTGTGTGTCGGTGGATACTCAGGACAAAACTG
TGAGATAGGAAGTGGGAAAACATCCCAGGAGGGAAACGCTCCAGATCCGG
TGCTAAAGAAGCCAGTTTTGATTGCCGTTGTTGTAACTTTGGCGTTGACA
GTTTTGAGTGCGGTTGTAACTGTTTACCTTTGCTTTCGTCGGAGAAAAAG
ACGAGTCGGTGTCGTTTAATTTGACGACTTGACGTGATTATGACGGATTC
TACGATACGAATACGTTTTCTGTATGTGATGGTAAGAGTAGAACATATTC
TTAACCATCCAACATCTTCCAAAAAGGCGTTAAATAGTCTACACCCGATA
AAATGGACAAATAAACTTACAAAATAAATACtgtcgggtacctaatagcc
ggagggggcgctaattaatttttcgaaaatttttc

Coding sequence (CDS) from alignment at sc0000045:328587..329721

>TCONS_00004588 ID=TCONS_00004588|Name=TCONS_00004588|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000045:328587..329721 (Clytia hemisphaerica)
GGTAACCCTTTAAATTGTGACTGTCAATTCTACCACAATTACAGATCGTT
AGAGCATGTTAGTATCGAAGGAGAATGCGAAACACCAACCAGCTTAAAAG
AAACAGAAACTAAACTCTTCTTAGAGAAAAATTTGTTAAATTGCACAATC
TGTTCTTTGAACAAATGTCAGAATAATGCAACATGCCAACCCCTTTGGAA
TCGATACAAATGTGTGTGTCGAGATCAGTTTTATGGAGAATTTTGTCAAT
TTCAAGATCAGTGTCGGGGAAACCTTTGCAGAAATAACTCGACATGCCAG
CCCAATGGAAATGAGACATACATATGCCTGTGTGGAGACAAACTCTTTGG
AGAATTTTGTCAATTCAAAGATCAGTGTTGGGGAAACCTTTGCAGAAATA
ACTCGACATGCCAGGCCAATGGAAATGAGACATACATATGCCTGTGTGGA
GACAAACTCTTTGGAGAATATTGTCAATTTGAAGATCCATGTTTTGATCA
GGCTTGTGCGAATAATGGAAGCTGTCAGCAAATCAAGAGTAATTGTTCGG
AAATAATTGTTCTACAGAAAAAGTGTGACCAATATTCTTTCAAATGTAAC
TGCAGTTCAGGATTTCATGGAGAGAAATGTGAAATGGAAAAAGCTTGTTA
TTTCAACAACCCTTGCCAAAACAATGGGACTTGCCAACCTGATGAAACTT
CAGATAAATATCACTGTTTGTGTGTCGGTGGATACTCAGGACAAAACTGT
GAGATAGGAAGTGGGAAAACATCCCAGGAGGGAAACGCTCCAGATCCGGT
GCTAAAGAAGCCAGTTTTGATTGCCGTTGTTGTAACTTTGGCGTTGACAG
TTTTGAGTGCGGTTGTAACTGTTTACCTTTGCTTTCGTCGGAGAAAAAGA
CGAGTCGGTGTCGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002582XLOC_002582Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004588-proteinTCONS_00004588-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004588-exon-sc0000045-1491911889:328587..329721TCONS_00004588-exon-sc0000045-1491911889:328587..329721Clytia hemisphaericaexon
TCONS_00004588-exon-sc0000045-1510915933:328587..329721TCONS_00004588-exon-sc0000045-1510915933:328587..329721Clytia hemisphaericaexon
TCONS_00004588-exon-sc0000045-1575043694:328587..329721TCONS_00004588-exon-sc0000045-1575043694:328587..329721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:328587..329721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191564	0.186806	0.216899	0.0424404	0	0.040828	0.0985146	0.138342	0.0645711	0.119973	0	0.0510324	0.127404	0.396929	0.195798	0.233468	0.0575227	0.0884384	0	0.170473	0.111129	0.054205	1.31786	0.639003	0.0822697	0.0734238	165.011	121.832	0.893011	0.476581
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR013032EGF-like_CS
Blast
[Close]
BLAST of TCONS_00004588 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.289e-20
Identity = 72/214 (33.64%), Postives = 97/214 (45.33%), Query Frame = -2 
Query:  382 LNCTI----CSLNKCQNNATCQPLWNRYKCVCRDQFYGEFCQFQ-DQCRGNLCRNNSTCQPNGNETYICLCGDKLFGEFCQ-FKDQCWGNLCRNNSTCQANGN-ETYICLCGDKLFGEYCQFE-DPCFDQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCNCSSGFHGEKCEMEKACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNCE 999
            +NC +    C  N CQN  TC  L N Y+C C+  F G  CQ   D+C  N C N  TC  +    Y C C     G+ CQ     C  N C N + C+ + N E+Y CLC     G+ C  + D C  + C N+G C                  Q S+ C C  GF G  CE +      NPCQN G+C   +  + + CLC+ G++G  C+
Sbjct:  752 INCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCF-DDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNT---------------QGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCM--DGVNTFSCLCLPGFTGDKCQ 947

HSP 2 Score: 83.1889 bits (204), Expect = 5.327e-17
Identity = 60/186 (32.26%), Postives = 79/186 (42.47%), Query Frame = -2 
Query:  382 CVCRDQFYGEFCQFQDQCRGNLCRNNSTCQPNGN-ETYICLCGDKLFGEFCQFKDQ--CW-GNLCRNNSTCQANGNETYICLCGDKLFGEYCQFEDPCFDQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCNCSSGFHGEKCEME-KACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNCE 924
            C C + F GE+CQ +D C  N C+N  TC          C C     GE CQ+     C+    C N  TC     +TY C C     G+ CQ+ D C    CAN  +C  + +                F C C +GF G+KCE +   C     CQ+ GTC        Y C C  G++GQ C+
Sbjct:   51 CKCPEGFLGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQ---------------FSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCL--NLPGSYQCQCPQGFTGQYCD 219
The following BLAST results are available for this feature:
BLAST of TCONS_00004588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOTC22.289e-2033.64Neurogenic locus notch homolog protein 2 OS=Homo s... [more]
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