TCONS_00004588-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004588-protein
Unique NameTCONS_00004588-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004588-protein ID=TCONS_00004588-protein|Name=TCONS_00004588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
GNPLNCDCQFYHNYRSLEHVSIEGECETPTSLKETETKLFLEKNLLNCTI
CSLNKCQNNATCQPLWNRYKCVCRDQFYGEFCQFQDQCRGNLCRNNSTCQ
PNGNETYICLCGDKLFGEFCQFKDQCWGNLCRNNSTCQANGNETYICLCG
DKLFGEYCQFEDPCFDQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCN
CSSGFHGEKCEMEKACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNC
EIGSGKTSQEGNAPDPVLKKPVLIAVVVTLALTVLSAVVTVYLCFRRRKR
RVGVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002582XLOC_002582Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004588TCONS_00004588Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR013032EGF-like_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 215..251
e-value: 1.7E-4
score: 31.0
coord: 50..83
e-value: 0.0019
score: 27.5
coord: 163..211
e-value: 0.34
score: 20.0
coord: 125..159
e-value: 55.0
score: 7.5
coord: 87..121
e-value: 15.0
score: 13.8
IPR000742EGF-like domainPFAMPF00008EGFcoord: 51..80
e-value: 1.4E-5
score: 25.2
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 160..211
score: 7.341
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 122..159
score: 14.098
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 84..121
score: 14.861
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 212..251
score: 18.501
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 47..83
score: 13.57
NoneNo IPR availableGENE3D2.10.25.10coord: 50..84
e-value: 2.8E-9
score: 36.6
NoneNo IPR availableGENE3D2.10.25.10coord: 162..212
e-value: 9.5E-7
score: 28.4
NoneNo IPR availableGENE3D2.10.25.10coord: 213..253
e-value: 5.4E-9
score: 35.4
coord: 121..161
e-value: 1.3E-4
score: 21.3
coord: 85..120
e-value: 2.0E-4
score: 20.8
NoneNo IPR availableCDDcd00054EGF_CAcoord: 52..83
e-value: 0.00352507
score: 33.379
NoneNo IPR availableCDDcd00054EGF_CAcoord: 216..251
e-value: 2.79059E-4
score: 36.8458
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 124..160
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 86..122
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 217..252
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 50..85
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 147..158
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 199..210
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 199..210
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 109..120
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 239..250
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 239..250
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 71..82

Blast
BLAST of TCONS_00004588-protein vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.011e-21
Identity = 72/214 (33.64%), Postives = 97/214 (45.33%), Query Frame = 0
Query:   46 LNCTI----CSLNKCQNNATCQPLWNRYKCVCRDQFYGEFCQFQ-DQCRGNLCRNNSTCQPNGNETYICLCGDKLFGEFCQ-FKDQCWGNLCRNNSTCQANGN-ETYICLCGDKLFGEYCQFE-DPCFDQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCNCSSGFHGEKCEMEKACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNCE 251
            +NC +    C  N CQN  TC  L N Y+C C+  F G  CQ   D+C  N C N  TC  +    Y C C     G+ CQ     C  N C N + C+ + N E+Y CLC     G+ C  + D C  + C N+G C                  Q S+ C C  GF G  CE +      NPCQN G+C   +  + + CLC+ G++G  C+
Sbjct:  752 INCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCF-DDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNT---------------QGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCM--DGVNTFSCLCLPGFTGDKCQ 947          

HSP 2 Score: 84.7297 bits (208), Expect = 4.297e-18
Identity = 60/186 (32.26%), Postives = 79/186 (42.47%), Query Frame = 0
Query:   71 CVCRDQFYGEFCQFQDQCRGNLCRNNSTCQPNGN-ETYICLCGDKLFGEFCQFKDQ--CW-GNLCRNNSTCQANGNETYICLCGDKLFGEYCQFEDPCFDQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCNCSSGFHGEKCEME-KACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNCE 251
            C C + F GE+CQ +D C  N C+N  TC          C C     GE CQ+     C+    C N  TC     +TY C C     G+ CQ+ D C    CAN  +C  + +                F C C +GF G+KCE +   C     CQ+ GTC        Y C C  G++GQ C+
Sbjct:   51 CKCPEGFLGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQ---------------FSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCL--NLPGSYQCQCPQGFTGQYCD 219          

HSP 3 Score: 78.5666 bits (192), Expect = 4.897e-16
Identity = 55/171 (32.16%), Postives = 79/171 (46.20%), Query Frame = 0
Query:   87 QCRGNL--CRNNSTCQPNGNETYICLCGDKLFGEFCQFKDQCWGNLCRNNSTCQANGN-ETYICLCGDKLFGEYCQF--EDPCF-DQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCNCSSGFHGEKCEMEKACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNCE 251
            QCR     C N   C    N T  C C +   GE+CQ +D C  N C+N  TC A        C C     GE CQ+    PCF  + C N G+C  +  +              +++C C  GF G++C+   AC  ++PC N  TC     ++++ C C+ G++GQ CE
Sbjct:   27 QCRDGYEPCVNEGMCVTYHNGTGYCKCPEGFLGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRD--------------TYECTCQVGFTGKECQWTDAC-LSHPCANGSTCT--TVANQFSCKCLTGFTGQKCE 180          

HSP 4 Score: 77.7962 bits (190), Expect = 9.610e-16
Identity = 68/244 (27.87%), Postives = 90/244 (36.89%), Query Frame = 0
Query:   51 CSLNKCQNNATC--QPLWNRYKCVCRDQFYGEFCQFQDQCR---GNLCRNNSTCQPNGNETYICLCGDKLFGEFCQFKDQCWGNLCRNNSTCQANGNE--------------------------------------TYICLCGDKLFGEYC-QFEDPCFDQACANNGSCQQIKSNCSEIIVLQKKCDQYSFKCNCSSGFHGEKCEMEKACYFNNPCQNNGTCQPDETSDKYHCLCVGGYSGQNC 250
            C  N+CQN  TC  Q +  +  C C   F GE CQ+           C N  TC     +TY C C     G+ CQ+ D C  + C N STC    N+                                      +Y C C     G+YC     PC    C N G+C+Q                 ++F+CNC  GF G  CE       N+ CQN G C   +  + Y+C C   ++GQ C
Sbjct:   68 CEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTG--------------DFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCV--DGVNTYNCRCPPQWTGQFC 295          
The following BLAST results are available for this feature:
BLAST of TCONS_00004588-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOTC21.011e-2133.64Neurogenic locus notch homolog protein 2 OS=Homo s... [more]
back to top