TCONS_00004541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004541
Unique NameTCONS_00004541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004541 ID=TCONS_00004541|Name=TCONS_00004541|organism=Clytia hemisphaerica|type=transcript|length=1458bp
AGCTTTAAGACATTGAAAGATATTTACTTACAATTTTTACTTAtgcctct
caaaaatatttttcgttacTTTTAGATTGAATAACACAAAAAAATCCGTA
GAAAATACTATAGAATAATCAatacaatttacagaccagaagaGATAGCA
GTGATGCATTCAGACGGACTGTTTTTAACGAAGAAACCAACAAACAATTG
GAATGGATTTCATCTCATTCTGccaTCTGTGAGTATCAGTAATGTAGGAC
AACTTGCAGTGGATATGCTCTTACACAACTTGAAagacaaagtcaaaaaa
gtgtCCGGAATTTATGACGAAGCATTATTACCGGTCACGGGGAAAGATCA
TAATGGAGAAATCTTCGAATCAATGGaagTATTTGAAGCTGAAAATTTAA
AGTTGGTTATCATTCAACAAAGAGCACCCTTCATTAAAGGAAGAATCCCA
AGTTTTAGACAACGTCTACTGGCGTGGATTGAACGATGTCAGTTCAAGAA
AGTAACCATACTTTCCAGTGTCAGCTCACATGTCAAGACAGATGCGGACT
TAAATGAAAGTTCACCATTCCGCTTTCTGTGCAACAAGGACACTATTAGA
AAGGAGCTTGTTTCAAAACATCAATGGATCGAATATTCAGTTAAGAAGCT
GTTAGAGCACAAAGGATCTCTAGAGCTGCCTGGATCAGGGATCGCCAAAT
CTCTTTACGAAGACAGCGAATCACAAAATATTCCATTTGTGGTTTGTTTG
GTCTTTTGTAACCATGGTGACTCCAGGAAAGAACTTCGTGTAGCAATGCA
GCATCTTCAACAATATTTGAATTTAGAATGGGCACTAGGGGAGCTATCGG
AACCATCACATTGGAAAATACAAAGCGCTTATGATAATGAGTTGATGATT
TTCTGATCAGATGGAATTAGAATAAACTGCAATGCaaagaaaggaaattt
gacAAAACATTGACTTCATAAAGTCTATATATTTGGGTACACCAGGCACC
ACTAGAGACTTTAATTATATCGGATGTCATAAATGAAACAATTAAACTAT
TCTTTATGAAGACAATCCAtgataaatgaaaatttgactCATGTAACAGA
ATTTATATGATTGTGTCGTGCAGAAAATAACCTGCAGGCCGTCATATTGA
TCATATAATACGGTGGAATACCTGAAGACCTTTAAGCTACATCACACCCC
AGAAGTGGTAAGGACACATCTCATGTAACATTTTTCGTTATTTTGGACCa
aacattttgaagaaaattgttttttttaaatattgtttGATGATAATCAA
TTTATTTCACTTagttgataaaaataaaaatgaaaataaaaatggctCCT
ATCATACGAATAGTACCCGTCATTTGCTATttttcaagtctaaaaaagga
aaatgatttACACTTTCGCGATTTGTGAAGAATCAAGCGAATACACATAA
AGTTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00004541-protein

>TCONS_00004541-protein ID=TCONS_00004541-protein|Name=TCONS_00004541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MHSDGLFLTKKPTNNWNGFHLILPSVSISNVGQLAVDMLLHNLKDKVKKV
SGIYDEALLPVTGKDHNGEIFESMEVFEAENLKLVIIQQRAPFIKGRIPS
FRQRLLAWIERCQFKKVTILSSVSSHVKTDADLNESSPFRFLCNKDTIRK
ELVSKHQWIEYSVKKLLEHKGSLELPGSGIAKSLYEDSESQNIPFVVCLV
FCNHGDSRKELRVAMQHLQQYLNLEWALGELSEPSHWKIQSAYDNELMIF
Run BLAST on NCBI

transcript from alignment at sc0000045:109089..114773-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004541 ID=TCONS_00004541|Name=TCONS_00004541|organism=Clytia hemisphaerica|type=transcript|length=5685bp|location=Sequence derived from alignment at sc0000045:109089..114773- (Clytia hemisphaerica)
AGCTTTAAGACATTGAAAGATATTTACTTACAATTTTTACTTATGCCTCT
CAAAAATATTTTTCGTTACTTTTAGATTGAATAACACAAAAAAATCCGTA
GAAAATACTATAGAATAATCAATACAATTTACAGACCAGAAGAGATAGCA
GTGATGCATTCAGACGGACTGTTTTTAACGAAGAAACCAACAAACAATTG
GAATGGATTTCATCTCATTCTGGTCTGTTTATTAGACTTTAAGATTATTA
CTATGCTCTAATCAATGCTCAGGCAATGCAATGCTTCGACGTTTCAAAAA
TAAAAGTCTGGATATGTCTATAAGCGTTTTTTCAATTTTTTTCTTATCTT
TTCAATGCAATCTGACTCTTTAACATATATTTGTCAATTTGCAAAGCATT
AGTTTTGTAGGTGTGCAGTTAGTTTGGGAAATGAAACTACTACAACCTGC
AACATTTTTGGGTATCACTTATCAATTCATAGAAGCGTCAAACACTTAGG
AGTATCTCATTAAACGTCAGCTCGATTTGGTATGGTTATAACAAGCCACA
TCAATTTAATTATTCAAATTTTTTTTATTTTTAGCCATCTGTGAGTATCA
GTAATGTAGGACAACTTGCAGTGGATATGCTCTTACACAACTTGAAAGAC
AAAGTCAAAAAAGTGTCCGGAATTTATGACGAAGCATTATTACCGGTCAC
GGGGAAAGATCATAATGGAGAAATCTTCGAATCAATGGAAGGTATTATTT
TTTTAAACGATTAATTTTTGAGTTCAAATACCTTGTTGAAGAATCAATAT
TTAGCAATCTGCTCAGGTATTGGGCTATTCTAGAAAAGAATTGTACACCT
AACTGTCTAACCGAGTCTGGCAGACCACACCATCGTAGTACCTTGTGATC
AGACTTGTATATGTTTAAACAATATATTTCTTTTAAAGCTCTACTGTTAG
ATGTTTTTTATATTTTTGGTGACATTGTGATGACATATTTTCAATCCAAC
CTCGACTATAACCTAAAGTCTTTGATATTGTTGTTGGTGTAGGGAATAAC
AGACATCAAGATTTATTTGGACCTAAAATTCGTTTTCGAAATATTATTTT
TCAGTATTTGAAGCTGAAAATTTAAAGTTGGTTATCATTCAACAAAGAGC
ACCCTTCATTAAAGTAAGGAACACCTCGTCAATATTTATTTTTTCGCTTA
CACAAGTTTCACCAGCCAAACTGTTCCTTAGAACTAACAGCTTCACAAAA
TTCTAATTTGTTTCCCATTTATACCAAAAAATTACCAAAGATATCTAAAA
GGTTGAGAATACAACTTGACTGCATTGAACTTGCTTACATATTCGAGTGA
TTTGCCTTGTCCCTCATAAGGATGGATTTAAGATAGTCATAGATAGTCCT
ATCAAATTACAGACAATTACAATAGATCAATTCGATTTTCACTTATTCTT
TCTGTACCAGCCCAACCAAATAACATCACTTCGTTAAAGATTGTTCGAAT
GTTAAAAAATAGCTATTGCACGCTCCAACGCATTAGCGAGTTTATGTATT
CTGACTTTTGAGGATAGTGACTGAGGCGATTTGGGAAAACCCGCATTTTT
GACCTGCAAAATCGAGTACGGTAAGAGAACTTGCTTACCGTCGTCATCAG
CGGATCAGGATCTAGATAATTCAAAAGCTAACCGTCTCCATACATACATA
AACTCGCTATTGATATTTGGAGAACAGTGGAAAAATGTCTCCGACACAAA
ATGGTGGCTAATAGCAACAAACCAAACTTTATCTTTTCAATCGCGTTTTA
AAACAAAGAAAGAATTTGGTTTGTTTACTGGCCAATTTTCACTTAACTGA
AACATTTTTTCTTAGGGAAGAATCCCAAGTTTTAGACAACGTCTACTGGC
GTGGATTGAACGATGTCAGTTCAAGAAAGTAACCATACTTTCCAGTGTCA
GCTCACATGTCAAGACAGATGCGGACTTAAATGAAAGGTCAGAATAATCA
TGGACAGTGTTAGTCTGCACGCATCCCCTCTGATATGTCTTGATATAGGG
GATGAGTATGATGTATGAAAATTTCCTTCCGAGAGTTACCCCAAACTCAA
AAAAATTGTATTAATCTCTAGCCATTCAAATTTTTAATTTAAATTTAATG
AAACTTAAAGTTCTCTCATATTACCAATCAAGCTAATCAAGTTTCTAAAA
CTCGAAAATATAAAGATGGGGGTAACTCTCGGACGGGAATTTTATACACG
GTACATTCCCTATATGAAAATCTTAGATCATCCATAAAACATAATGATAC
GGCTATTCATCATATGCACCATTGCAATGTCTTCCAAGGAGCCAACAGCT
GATTAGTTGAAAGTGACGTATTGTCTGATTTTACGTCACTTACAACCAAT
CAACTATTGGGTCCATGATGTAATGTCAGAAGACATCGCAGTGGTGCGGT
TAAAATCTTCTTTGTATAGATTGTCCTTTTTTGGTCTTGGAGTGAGAAAA
TTTTTATAAATTAATTACAAAAAAAGCTAGATTTATACAGTGGAAACTCC
ACATCTCGAAAACGCAAGTTTATCCGAATTATGGAAATTTTGAGTTATGG
AGTAAGGTTAACTGAAGGGAGTAGAAAACTTGTTCGAGTTAAAAAGACAT
TCCATCTATAGAGGTTCTAGTTAAAGAGACTCTACTGTATTTGCAAATTA
TGCTTTTACTAAATATCCCTGTCAATCAATTTTGGTTTGATTACTATGTT
CCTTATGAGGTGGATTCTAATCACGTACATAAGATTAACATTCAGATTAT
ACTGTTTATATTTTAGTTCACCATTCCGCTTTCTGTGCAACAAGGACACT
ATTAGAAAGGAGCTTGTTTCAAAACATCAATGGATCGAATATTCAGTTAA
GAAGCTGTTAGAGCACAAAGGTAAAAATGAACCTGGATTATGAATAGAAT
ACACCTTTTCGACCTTAGCCGCCAATTGCCGCGCGGGCATTTTTTTATCC
GCTTTATCCCATTAAACTCGATCCAATCCTTTTTTGACGCATTTTTCTAT
TGTCTATAGGTGCGAAAAAAGGGACTGGGACGGTTTTAGTGGGATAAAGT
GGACAAAAATATGCCTCTGTGGCAATTGGCGGCAACGGTCAAAAAGGTGT
ATATAAATGCTGCTGCACTTTTTGATTTTTTGGATAATGGGCTGGGAGCT
TCTTTGAAGGTGAGTCAACACAGTATGAAAAAATTAGAGAGGCCCAGCTG
GCACACAACGTTGTTTCAACGTTTATCTAACGTTATATGGACGTTGTGAA
CGTCAAATAAACGTTGAAACAACGTTTGTGCCAGCTTGGGGGGGGGTGAA
AGAGCCTCTAACAGGTTTTTACTTACGTGTTGTGTTGGCGTGATGCTTTA
GTTGTTGTTGTTTTTTAGACTAATTTTTCGATATTTTTTGCGTGATGAAA
ATAGATTTTAGCAATTTTAGCAAAAAAATTACCACCATAGAGCCTCGTGA
AGTTTGAGGACAAAATAGAACCGACTGTTCACAAATGTCGCCTTCTTTCA
GGTCAAAATAATGAACTTTGAAATAGAGGGCTGAGTGAATTGAATTTCAA
TGTTAACAAAAATCAGATTTCTGTTAAAAAATTCTATGCCACTACTTGTC
AGAATCGTACCTAGACGGGTTCTCGTTTACCGTTATCAATTTTTCTAATT
ACTTTTTAGGATCTCTAGAGCTGCCTGGATCAGGGATCGCCAAATCTCTT
TACGAAGACAGGTATGGATTTATGACGAATATTTTTGTCTTTTCTATTGA
CTCAATCAAACTAATTTTTATTAAATACGTGAAGGATGTTTTTTACCTTT
CAAAGTCTTTCTAAAGGTTTAAAAGTCGAATTAGCCTCTCTAAGGATCAG
GATTTCCCTAATTGAGCCTCATAATAGTACGTAAGCGATGGGGAAAAAAT
GTCAGGAAGTTCTTCGAAAATCGTCTCTTTAAGGTTCACTTTTTCTCAAA
AATTTAGTCTCTCAAAGGATCGCTTCTCGGAGGTCCATTTCGCACATACC
TGACATTCTCAAACATCCCCAGATGATGACCTAGAAACTTCATGTTTTTT
TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCACCAAAGAAATATTTTT
GTCTTATTCGACTTGGTTCTTTGATTGAATTCCATTCCTTTTCAGCGAAT
CACAAAATATTCCATTTGTGGTTTGTTTGGTCTTTTGTAACCATGGTGAC
TCCAGGAAAGAACTTCGTGTAGCAATGCAGCATCTTCAACAATATTTGAA
TTTAGAATGGGCACTAGGTATACATGACAGTTTTCGTAATTTTTTCCCTG
ATTTGGTTTTATCCGCTAGATTTAAAGTTCGTTCGTTTTAAGCGTGTACT
CCTTTTTTATCACGTAGAAACCACCCTCGACGTCTAGTAGATGTACGCTG
ATATGGTTTACACATATCAACAATTAATACGTAACATATCGTTCTGCAAA
AAGTGTACACGCTTAAGTGGATAGACCTAAGTTCTGTTGGAACGGAAAAA
TATAATTTCCCCTAGATCTCTTGGACATATTTTTCGTCATTGGAAGGAAA
AGATTTCCCTAGCCAAATATCATTAGCTAATTATCGATTATATTTTAAGT
ACTTTAAGTACTTTTTTATATCTTGAAAAATCCCAAAATCAATAATCAAA
AATCTCCCTCAAAATATTTTATAAACACTACAGCCGACTCTCATTTATTC
GAACCTCTACTATTCGAATCTTTCTATAATTCGAACTAAAATATTGGTTT
CCTCAGCTAGAAACTCGTATAAGATATTTCTATATTTCGAATCTTTCTCT
TATTCGAAGACAATCTTTAGTCCCTTGAAGATTGAATTAGAGACTGTTAA
CTGTATTACCATGGATGAAATCAAATTTTTTTAAGCGACGTTATCTTTTC
TTCTTCGTAATAAAGGGGAGCTATCGGAACCATCACATTGGAAAATACAA
AGCGCTTATGATAATGAGTTGATGATTTTCTGATCAGATGGAATTAGAAT
AAACTGCAATGCAAAGAAAGGAAATTTGACAAAACATTGACTTCATAAAG
TCTATATATTTGGGTACACCAGGCACCACTAGAGACTTTAATTATATCGG
ATGTCATAAATGAAACAATTAAACTATTCTTTATGAAGACAATCCATGAT
AAATGAAAATTTGACTCATGTAACAGAATTTATATGATTGTGTCGTGCAG
AAAATAACCTGCAGGCCGTCATATTGATCATATAATACGGTGGAATACCT
GAAGACCTTTAAGCTACATCACACCCCAGAAGTGGTAAGGACACATCTCA
TGTAACATTTTTCGTTATTTTGGACCAAACATTTTGAAGAAAATTGTTTT
TTTTAAATATTGTTTGATGATAATCAATTTATTTCACTTAGTTGATAAAA
ATAAAAATGAAAATAAAAATGGCTCCTATCATACGAATAGTACCCGTCAT
TTGCTATTTTTCAAGTCTAAAAAAGGAAAATGATTTACACTTTCGCGATT
TGTGAAGAATCAAGCGAATACACATAAAGTTGAAG

Coding sequence (CDS) from alignment at sc0000045:109089..114773-

>TCONS_00004541 ID=TCONS_00004541|Name=TCONS_00004541|organism=Clytia hemisphaerica|type=CDS|length=6024bp|location=Sequence derived from alignment at sc0000045:109089..114773- (Clytia hemisphaerica)
GGGAGCTATCGGAACCATCACATTGGAAAATACAAAGCGCTTATGATAAT
GAGTTGATGATTTTCTGACGAATCACAAAATATTCCATTTGTGGTTTGTT
TGGTCTTTTGTAACCATGGTGACTCCAGGAAAGAACTTCGTGTAGCAATG
CAGCATCTTCAACAATATTTGAATTTAGAATGGGCACTAGGATCTCTAGA
GCTGCCTGGATCAGGGATCGCCAAATCTCTTTACGAAGACAGTTCACCAT
TCCGCTTTCTGTGCAACAAGGACACTATTAGAAAGGAGCTTGTTTCAAAA
CATCAATGGATCGAATATTCAGTTAAGAAGCTGTTAGAGCACAAAGGGAA
GAATCCCAAGTTTTAGACAACGTCTACTGGCGTGGATTGAACGATGTCAG
TTCAAGAAAGTAACCATACTTTCCAGTGTCAGCTCACATGTCAAGACAGA
TGCGGACTTAAATGAAAGTATTTGAAGCTGAAAATTTAAAGTTGGTTATC
ATTCAACAAAGAGCACCCTTCATTAAACCATCTGTGAGTATCAGTAATGT
AGGACAACTTGCAGTGGATATGCTCTTACACAACTTGAAAGACAAAGTCA
AAAAAGTGTCCGGAATTTATGACGAAGCATTATTACCGGTCACGGGGAAA
GATCATAATGGAGAAATCTTCGAATCAATGGAAGATGCATTCAGACGGAC
TGTTTTTAACGAAGAAACCAACAAACAATTGGAATGGATTTCATCTCATT
CTGGGGAGCTATCGGAACCATCACATTGGAAAATACAAAGCGCTTATGAT
AATGAGTTGATGATTTTCTGACGAATCACAAAATATTCCATTTGTGGTTT
GTTTGGTCTTTTGTAACCATGGTGACTCCAGGAAAGAACTTCGTGTAGCA
ATGCAGCATCTTCAACAATATTTGAATTTAGAATGGGCACTAGGATCTCT
AGAGCTGCCTGGATCAGGGATCGCCAAATCTCTTTACGAAGACAGTTCAC
CATTCCGCTTTCTGTGCAACAAGGACACTATTAGAAAGGAGCTTGTTTCA
AAACATCAATGGATCGAATATTCAGTTAAGAAGCTGTTAGAGCACAAAGG
GAAGAATCCCAAGTTTTAGACAACGTCTACTGGCGTGGATTGAACGATGT
CAGTTCAAGAAAGTAACCATACTTTCCAGTGTCAGCTCACATGTCAAGAC
AGATGCGGACTTAAATGAAAGTATTTGAAGCTGAAAATTTAAAGTTGGTT
ATCATTCAACAAAGAGCACCCTTCATTAAACCATCTGTGAGTATCAGTAA
TGTAGGACAACTTGCAGTGGATATGCTCTTACACAACTTGAAAGACAAAG
TCAAAAAAGTGTCCGGAATTTATGACGAAGCATTATTACCGGTCACGGGG
AAAGATCATAATGGAGAAATCTTCGAATCAATGGAAGATGCATTCAGACG
GACTGTTTTTAACGAAGAAACCAACAAACAATTGGAATGGATTTCATCTC
ATTCTGGGGAGCTATCGGAACCATCACATTGGAAAATACAAAGCGCTTAT
GATAATGAGTTGATGATTTTCTGACGAATCACAAAATATTCCATTTGTGG
TTTGTTTGGTCTTTTGTAACCATGGTGACTCCAGGAAAGAACTTCGTGTA
GCAATGCAGCATCTTCAACAATATTTGAATTTAGAATGGGCACTAGGATC
TCTAGAGCTGCCTGGATCAGGGATCGCCAAATCTCTTTACGAAGACAGTT
CACCATTCCGCTTTCTGTGCAACAAGGACACTATTAGAAAGGAGCTTGTT
TCAAAACATCAATGGATCGAATATTCAGTTAAGAAGCTGTTAGAGCACAA
AGGGAAGAATCCCAAGTTTTAGACAACGTCTACTGGCGTGGATTGAACGA
TGTCAGTTCAAGAAAGTAACCATACTTTCCAGTGTCAGCTCACATGTCAA
GACAGATGCGGACTTAAATGAAAGTATTTGAAGCTGAAAATTTAAAGTTG
GTTATCATTCAACAAAGAGCACCCTTCATTAAACCATCTGTGAGTATCAG
TAATGTAGGACAACTTGCAGTGGATATGCTCTTACACAACTTGAAAGACA
AAGTCAAAAAAGTGTCCGGAATTTATGACGAAGCATTATTACCGGTCACG
GGGAAAGATCATAATGGAGAAATCTTCGAATCAATGGAAGATGCATTCAG
ACGGACTGTTTTTAACGAAGAAACCAACAAACAATTGGAATGGATTTCAT
CTCATTCTGGGGAGCTATCGGAACCATCACATTGGAAAATACAAAGCGCT
TATGATAATGAGTTGATGATTTTCTGACGAATCACAAAATATTCCATTTG
TGGTTTGTTTGGTCTTTTGTAACCATGGTGACTCCAGGAAAGAACTTCGT
GTAGCAATGCAGCATCTTCAACAATATTTGAATTTAGAATGGGCACTAGG
ATCTCTAGAGCTGCCTGGATCAGGGATCGCCAAATCTCTTTACGAAGACA
GTTCACCATTCCGCTTTCTGTGCAACAAGGACACTATTAGAAAGGAGCTT
GTTTCAAAACATCAATGGATCGAATATTCAGTTAAGAAGCTGTTAGAGCA
CAAAGGGAAGAATCCCAAGTTTTAGACAACGTCTACTGGCGTGGATTGAA
CGATGTCAGTTCAAGAAAGTAACCATACTTTCCAGTGTCAGCTCACATGT
CAAGACAGATGCGGACTTAAATGAAAGTATTTGAAGCTGAAAATTTAAAG
TTGGTTATCATTCAACAAAGAGCACCCTTCATTAAACCATCTGTGAGTAT
CAGTAATGTAGGACAACTTGCAGTGGATATGCTCTTACACAACTTGAAAG
ACAAAGTCAAAAAAGTGTCCGGAATTTATGACGAAGCATTATTACCGGTC
ACGGGGAAAGATCATAATGGAGAAATCTTCGAATCAATGGAAGATGCATT
CAGACGGACTGTTTTTAACGAAGAAACCAACAAACAATTGGAATGGATTT
CATCTCATTCTGGGGAGCTATCGGAACCATCACATTGGAAAATACAAAGC
GCTTATGATAATGAGTTGATGATTTTCTGACGAATCACAAAATATTCCAT
TTGTGGTTTGTTTGGTCTTTTGTAACCATGGTGACTCCAGGAAAGAACTT
CGTGTAGCAATGCAGCATCTTCAACAATATTTGAATTTAGAATGGGCACT
AGGATCTCTAGAGCTGCCTGGATCAGGGATCGCCAAATCTCTTTACGAAG
ACAGTTCACCATTCCGCTTTCTGTGCAACAAGGACACTATTAGAAAGGAG
CTTGTTTCAAAACATCAATGGATCGAATATTCAGTTAAGAAGCTGTTAGA
GCACAAAGGGAAGAATCCCAAGTTTTAGACAACGTCTACTGGCGTGGATT
GAACGATGTCAGTTCAAGAAAGTAACCATACTTTCCAGTGTCAGCTCACA
TGTCAAGACAGATGCGGACTTAAATGAAAGTATTTGAAGCTGAAAATTTA
AAGTTGGTTATCATTCAACAAAGAGCACCCTTCATTAAACCATCTGTGAG
TATCAGTAATGTAGGACAACTTGCAGTGGATATGCTCTTACACAACTTGA
AAGACAAAGTCAAAAAAGTGTCCGGAATTTATGACGAAGCATTATTACCG
GTCACGGGGAAAGATCATAATGGAGAAATCTTCGAATCAATGGAAGATGC
ATTCAGACGGACTGTTTTTAACGAAGAAACCAACAAACAATTGGAATGGA
TTTCATCTCATTCTGGGGAGCTATCGGAACCATCACATTGGAAAATACAA
AGCGCTTATGATAATGAGTTGATGATTTTCTGACGAATCACAAAATATTC
CATTTGTGGTTTGTTTGGTCTTTTGTAACCATGGTGACTCCAGGAAAGAA
CTTCGTGTAGCAATGCAGCATCTTCAACAATATTTGAATTTAGAATGGGC
ACTAGGATCTCTAGAGCTGCCTGGATCAGGGATCGCCAAATCTCTTTACG
AAGACAGTTCACCATTCCGCTTTCTGTGCAACAAGGACACTATTAGAAAG
GAGCTTGTTTCAAAACATCAATGGATCGAATATTCAGTTAAGAAGCTGTT
AGAGCACAAAGGGAAGAATCCCAAGTTTTAGACAACGTCTACTGGCGTGG
ATTGAACGATGTCAGTTCAAGAAAGTAACCATACTTTCCAGTGTCAGCTC
ACATGTCAAGACAGATGCGGACTTAAATGAAAGTATTTGAAGCTGAAAAT
TTAAAGTTGGTTATCATTCAACAAAGAGCACCCTTCATTAAACCATCTGT
GAGTATCAGTAATGTAGGACAACTTGCAGTGGATATGCTCTTACACAACT
TGAAAGACAAAGTCAAAAAAGTGTCCGGAATTTATGACGAAGCATTATTA
CCGGTCACGGGGAAAGATCATAATGGAGAAATCTTCGAATCAATGGAAGA
TGCATTCAGACGGACTGTTTTTAACGAAGAAACCAACAAACAATTGGAAT
GGATTTCATCTCATTCTGGGGAGCTATCGGAACCATCACATTGGAAAATA
CAAAGCGCTTATGATAATGAGTTGATGATTTTCTGACGAATCACAAAATA
TTCCATTTGTGGTTTGTTTGGTCTTTTGTAACCATGGTGACTCCAGGAAA
GAACTTCGTGTAGCAATGCAGCATCTTCAACAATATTTGAATTTAGAATG
GGCACTAGGATCTCTAGAGCTGCCTGGATCAGGGATCGCCAAATCTCTTT
ACGAAGACAGTTCACCATTCCGCTTTCTGTGCAACAAGGACACTATTAGA
AAGGAGCTTGTTTCAAAACATCAATGGATCGAATATTCAGTTAAGAAGCT
GTTAGAGCACAAAGGGAAGAATCCCAAGTTTTAGACAACGTCTACTGGCG
TGGATTGAACGATGTCAGTTCAAGAAAGTAACCATACTTTCCAGTGTCAG
CTCACATGTCAAGACAGATGCGGACTTAAATGAAAGTATTTGAAGCTGAA
AATTTAAAGTTGGTTATCATTCAACAAAGAGCACCCTTCATTAAACCATC
TGTGAGTATCAGTAATGTAGGACAACTTGCAGTGGATATGCTCTTACACA
ACTTGAAAGACAAAGTCAAAAAAGTGTCCGGAATTTATGACGAAGCATTA
TTACCGGTCACGGGGAAAGATCATAATGGAGAAATCTTCGAATCAATGGA
AGATGCATTCAGACGGACTGTTTTTAACGAAGAAACCAACAAACAATTGG
AATGGATTTCATCTCATTCTGGGGAGCTATCGGAACCATCACATTGGAAA
ATACAAAGCGCTTATGATAATGAGTTGATGATTTTCTGACGAATCACAAA
ATATTCCATTTGTGGTTTGTTTGGTCTTTTGTAACCATGGTGACTCCAGG
AAAGAACTTCGTGTAGCAATGCAGCATCTTCAACAATATTTGAATTTAGA
ATGGGCACTAGGATCTCTAGAGCTGCCTGGATCAGGGATCGCCAAATCTC
TTTACGAAGACAGTTCACCATTCCGCTTTCTGTGCAACAAGGACACTATT
AGAAAGGAGCTTGTTTCAAAACATCAATGGATCGAATATTCAGTTAAGAA
GCTGTTAGAGCACAAAGGGAAGAATCCCAAGTTTTAGACAACGTCTACTG
GCGTGGATTGAACGATGTCAGTTCAAGAAAGTAACCATACTTTCCAGTGT
CAGCTCACATGTCAAGACAGATGCGGACTTAAATGAAAGTATTTGAAGCT
GAAAATTTAAAGTTGGTTATCATTCAACAAAGAGCACCCTTCATTAAACC
ATCTGTGAGTATCAGTAATGTAGGACAACTTGCAGTGGATATGCTCTTAC
ACAACTTGAAAGACAAAGTCAAAAAAGTGTCCGGAATTTATGACGAAGCA
TTATTACCGGTCACGGGGAAAGATCATAATGGAGAAATCTTCGAATCAAT
GGAAGATGCATTCAGACGGACTGTTTTTAACGAAGAAACCAACAAACAAT
TGGAATGGATTTCATCTCATTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002554XLOC_002554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004541-exon-sc0000045-1575043694:114552..114773TCONS_00004541-exon-sc0000045-1575043694:114552..114773Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1575043694:114033..114189TCONS_00004541-exon-sc0000045-1575043694:114033..114189Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1575043694:113611..113669TCONS_00004541-exon-sc0000045-1575043694:113611..113669Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1575043694:112787..112908TCONS_00004541-exon-sc0000045-1575043694:112787..112908Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1575043694:111854..111957TCONS_00004541-exon-sc0000045-1575043694:111854..111957Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1575043694:111013..111064TCONS_00004541-exon-sc0000045-1575043694:111013..111064Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1575043694:110357..110478TCONS_00004541-exon-sc0000045-1575043694:110357..110478Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1575043694:109089..109708TCONS_00004541-exon-sc0000045-1575043694:109089..109708Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:114552..114773TCONS_00004541-exon-sc0000045-1510915933:114552..114773Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:114033..114189TCONS_00004541-exon-sc0000045-1510915933:114033..114189Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:113611..113669TCONS_00004541-exon-sc0000045-1510915933:113611..113669Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:112787..112908TCONS_00004541-exon-sc0000045-1510915933:112787..112908Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:111854..111957TCONS_00004541-exon-sc0000045-1510915933:111854..111957Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:111013..111064TCONS_00004541-exon-sc0000045-1510915933:111013..111064Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:110357..110478TCONS_00004541-exon-sc0000045-1510915933:110357..110478Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1510915933:109089..109708TCONS_00004541-exon-sc0000045-1510915933:109089..109708Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:114552..114773TCONS_00004541-exon-sc0000045-1491911889:114552..114773Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:114033..114189TCONS_00004541-exon-sc0000045-1491911889:114033..114189Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:113611..113669TCONS_00004541-exon-sc0000045-1491911889:113611..113669Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:112787..112908TCONS_00004541-exon-sc0000045-1491911889:112787..112908Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:111854..111957TCONS_00004541-exon-sc0000045-1491911889:111854..111957Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:111013..111064TCONS_00004541-exon-sc0000045-1491911889:111013..111064Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:110357..110478TCONS_00004541-exon-sc0000045-1491911889:110357..110478Clytia hemisphaericaexon
TCONS_00004541-exon-sc0000045-1491911889:109089..109708TCONS_00004541-exon-sc0000045-1491911889:109089..109708Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004541-proteinTCONS_00004541-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:109089..114773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.8708	49.4322	37.5251	32.8664	33.3714	21.5942	25.8902	24.8735	23.7152	19.8336	15.9252	17.4609	10.6714	13.2575	12.797	15.3488	21.894	17.3405	7.51588	7.16261	18.0665	16.5229	31.2686	22.9001	18.1663	22.4287	18.6971	12.5636	15.695	15.134
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019151Proteasome_assmbl_chaperone_2
Blast
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BLAST of TCONS_00004541 vs. Swiss-Prot (Human)
Match: PSMG2 (Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.904e-27
Identity = 73/242 (30.17%), Postives = 136/242 (56.20%), Query Frame = 1 
Query:  205 GFHLILPSVSISNVGQLAVDMLLHNLKDKVKKVSGIYDEALLPVTGKD-------HNGEIFESMEVFEAENLKLVIIQQRAPFIKGRIPSFRQRLLAWIERCQFKKVTILSSVSSHVKTDADLNESSPFRFLCNKDTIRKELVSKHQ---WIEY----SVKKLLEHKGSLELPGSGIAKSLYEDSESQNIPFVVCLVFCNHGDSRKELRVAMQHLQQYLNLEWALGE--LSEPSHWKIQSAY 882
            GF L++P+VS+ NVGQLA+D+++  L   + K+   Y + L+P+ G +       ++ E+  + EV+   + KLV +Q R+ FIK +   F ++LL+W++     +V +LSS  S+ + D  L  S+PFR+L    +++K + +K +   W E      + ++ + +  + +PG GI K+LY++S S+ I   V L F + GD+  +    +++L ++L +   L +      S WKI S++
Sbjct:   14 GFTLLMPAVSVGNVGQLAMDLIISTLN--MSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQL-RSTPFRYLLTP-SMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRIPGGGITKTLYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTVSASRWKIPSSW 251
The following BLAST results are available for this feature:
BLAST of TCONS_00004541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMG21.904e-2730.17Proteasome assembly chaperone 2 OS=Homo sapiens GN... [more]
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