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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004529 ID=TCONS_00004529|Name=TCONS_00004529|organism=Clytia hemisphaerica|type=transcript|length=2624bp ATCGTTTCAGAGTAATCAAACTATTAAACAAATATGTTAAAACATTTCTG GCATTTCCACTAAAATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTG CCATTAGCTATATATTATGGATGCAAACTCGTTAAAGactattttattgt ttttgcaTTGATCTTCAATTTCTTGACGACAACTTTCTTTCCAAATTTGA ATTTGGAATGTTTTAAAGACTTTAATCCTGACATTGCAGATTTTGCGACA GGAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGG ATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGA AAATTCTTCTACTCGAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTA GCAGGCTTTCAGTACACTGCTATCCGATTAGGTGCTAGTTGGGATTATAT GACAGAAAAACATGAGGATGGAATCACCTCTACCAATCAAAAGAATGGAC AAGTTTATTGGCCGCGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAAT GCTTTGATTTATACTAGGGGAAATAAACGAGATTATGATTCATGGAAGGA GCAAGGTAACCCAGGGTGGAGTTATGAAGATGTTTTacaatactttaaaa agtctgAAGACCAAAGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCT ACAGGTGGTCCACTTCCTGTGGAACAAGCCGTTGTAGACCTACCTATGAT TCAAGATTGTATAAATGCTTGCTCCAAGATACTGTCTTATAACCCTGACT ACAATGGAGAAAAACAGACAGGGTGCTTCTTTCATCAATTAACAAGACGC GACGGTCTTCGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATC AAATCTTCACGTCAGTCCATTTTCACATGTTCAGAAGATTCTGATTGACC CTGAAACGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCC ATGACAGTCAAAGCAAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGC TTCTCCCCAGATCCTAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGG AAAAACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAACTTA CAAGATCATGTCAACTATATCGATTACTTGTTTTTCAATGATAGTGTTTC CTTCCGATATGAAGATTACTTGAGTTATGATGCACTGCAGAAACTATTGA ACGAAAGAAAAGGGTATCTCACGCAAACACTACCTATTGGAACTTTCATA CCGTTGACCAAAGAATCTGAAGAAAAGGATTGGCCTGAAATACAAATGCA TTACATCACTGGGTTGATTGCAAATTTCTATGACTTTAACCCGTTTTTCA ACATTGCAGATGAGTACTGGGCGTACATGAAATCTCAAATGAGTGACAAA GTGGGAATGACTTTGATGTATTGTTTATTGAGACCAAGGAGTCGGGGACG TATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCATTGATCATACCAA ATTACTTCGACCACCCTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAA TTCACCAAGAAACTTGCAGCTGCTATGAAACATTTAAATGCTTCAACTTA TCGCGGTAAAGAACCTGGGTGCGAGCAACATGAGCTAGATTCGGATGACT ACCTCCGATGCATAGTTCGAAGAGGAGCGACCACCGTTTACCACCCAGTG GGTACGTGCAAAATGGGACCCCATACTGATGATCAAGCAGTTGTAGATTC AACATTGAAGGTTTATGGTATCAAAGGATTACGTGTTGTCGATGCATCAA TCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACTATCATGATC GCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAAAGACAAAAAATC TTATTTGGAGTAAAAATAATCAATGGAATGAGAAACGGAAATACGACTCC AACTTGCTTCAGTAAATATGCCAGCTTTAGGTATTCAAGgtgtttcttta aaaagaattcattAGTAccaaggcgaaaataaaaaaatgttatgtTTCTN GAattgatgtcaacgcattgttcattttcctttgaaaaagtgacgtcaca ataaattttcctaacgacgggcaactctggccAGTGTAGGCccgcgaaaa gaaccaattgcattgcgcaaaaagccgtgtagcccgctttgaaaaagtaa ccggttaacaatgcgTTTTTCTTCATAGAAGATAATTTCTAATAATAATA AGATCGTTTTGGGTATNgatttttctgacccggccgcagactatggtttc atctatatggttcatcataaagaaaatcaagttgaccgttcaagctaaAA AACGTCGTTCGGCTAGATATTCCCTCTTGTAAATCAGTaattcgttagta gttgatacattagtattcagggtttacttcatactgtttgtacataaaag ttatcttcaaagttctatttcaatgatccgGCTGNcttaacttttttcgt ttttatcagtttgagttatttatatatcaatacttttctttttctaaaat gacagatattacatatcttcacta Run BLAST on NCBI protein sequence of TCONS_00004529-protein >TCONS_00004529-protein ID=TCONS_00004529-protein|Name=TCONS_00004529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MGWKKKAGILFLPLAIYYGCKLVKDYFIVFALIFNFLTTTFFPNLNLECF KDFNPDIADFATGDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLL EAGGGETIHTEVAGFQYTAIRLGASWDYMTEKHEDGITSTNQKNGQVYWP RGKILGGSSSINALIYTRGNKRDYDSWKEQGNPGWSYEDVLQYFKKSEDQ RTENLVDSKFHSTGGPLPVEQAVVDLPMIQDCINACSKILSYNPDYNGEK QTGCFFHQLTRRDGLRCSTAKAYLKPKRSNLHVSPFSHVQKILIDPETKT AKGVLYKKNGKSMTVKARKEVILSAGAVASPQILMLSGVGPKEELEKHGI PIIKELQVGYNLQDHVNYIDYLFFNDSVSFRYEDYLSYDALQKLLNERKG YLTQTLPIGTFIPLTKESEEKDWPEIQMHYITGLIANFYDFNPFFNIADE YWAYMKSQMSDKVGMTLMYCLLRPRSRGRIKLRSVNAEDHPLIIPNYFDH PEDLREFVEGMKFTKKLAAAMKHLNASTYRGKEPGCEQHELDSDDYLRCI VRRGATTVYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVVDASIMPTI VSGNTNAPTIMIAEKAADIIKEDWKDKKSYLE Run BLAST on NCBI transcript from alignment at sc0000045:757988..763379+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004529 ID=TCONS_00004529|Name=TCONS_00004529|organism=Clytia hemisphaerica|type=transcript|length=5392bp|location=Sequence derived from alignment at sc0000045:757988..763379+ (Clytia hemisphaerica) ATCGTTTCAGAGTAATCAAACTATTAAACAAATATGTTAAAACATTTCTG
GCATTTCCACTAAAATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTG
CCATTAGCTATATATTATGGATGCAAACTCGTTAAAGactattttattgt
ttttgcaTTGATCTTCAATTTCTTGACGACAACTTTCTTTCCAAATTTGA
ATTTGGAATGTTTTAAAGACTTTAATCCTGACATTGCAGATTTTGCGACA
GGAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGG
ATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGA
AAATTCTTCTACTCGAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTA
GCAGGCTTTCAGTACACTGCTATCCGATTAGGTGCTAGTTGGGATTATAT
GACAGAAAAACATGAGGATGGAATCACCTCTACCAATCAAAAGAATGGAC
AAGTTTATTGGCCGCGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAAT
GCTTTGATTTATACTAGGGGAAATAAACGAGATTATGATTCATGGAAGGA
GCAAGGTAACCCAGGGTGGAGTTATGAAGATGTTTTacaatactttaaaa
agtctgAAGACCAAAGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCT
ACAGGTGGTCCACTTCCTGTGGAACAAGCCGTTGTAGACCTACCTATGAT
TCAAGATTGTATAAATGCTTGCTCCAAGATACTGTCTTATAACCCTGACT
ACAATGGAGAAAAACAGACAGGGTGCTTCTTTCATCAATTAACAAGACGC
GACGGTCTTCGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATC
AAATCTTCACGTCAGTCCATTTTCACATGTTCAGAAGATTCTGATTGACC
CTGAAACGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCC
ATGACAGTCAAAGCAAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGC
TTCTCCCCAGGTAAATGATTTAGACATCAGACTTCCTTTTAAGTCAAACT
TTGCTACActtatactctcgggtaccaattagccggggggtttggcataa
gcggggggttggaaaaaatctcaaaNNNNNNNNNNNNNGGGGggagggtt
ggaataaaaatgtcaggggtgaaaaatttcgcaaaaGTTAATTAGCGGGG
CCCCcgactattaggtacccgagagtaagtaaAGATCTTGATATTCAAAT
CTGAAAAGGTTCTTTAGAACGTGGTAGATTGTAATTCATAATCATCTAAC
TTCTTGTTACAGATCCTAATGCTATCAGGAGTTGGACCAAAGGAGGAATT
GGAAAAACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAACT
TACAAGATCATGTCAACTATATCGATTACTTGTTTTTCAATGATAGTGTT
TCCTTCCGATATGAAGAGTAAGCACATATTTGATGAAGTTTTTGCTGTAT
TGGGATCTTGCAGGAAAATATACATCACCTCCTATATTGCAGTGGATAAG
TGATTATTGACCTCCTTAAAAAACAGCAAGTTCAGGCATCAGTTGAACCA
ATAGACTATTCCATTGATAATGAGCTGttaacactgacctttatatatcc
ctggaacaagttactcaatgccggccaagcaaaatattatgatcggaTTG
AGCGCTAGATTTAATTTCGCTTGTACactaatgatgtagcgccgtttgtc
gttaggcaaagtttcaaacactacaatggcttctttgcgggcaccaactt
tcaaaaaacttagtACTGGGTTTGTATAAATCTCAGTGGGTTTTAAACAT
CTTGAATTCAAAGTTTTTGGTTACCTTACTTACTTCTTTACCAATGGAAC
GACAGAAGCTTTTCTTAAAGTTCCCAAACTCTTAACACCTTTATCTGTAA
TTTGCCACTTTTTTTCAGTTACTTGAGTTATGATGCACTGCAGAAACTAT
TGAACGAAAGAAAAGGGTATCTCACGCAAACACTACCTATTGGAACTTTC
ATACCGTTGACCAAAGAATCTGAAGAAAAGGATTGGCCTGAAATACAAAT
GCATTACATCACTGGGTTGATTGCAAATTTCTATGACTTTAACCCGTTTT
TCAACATTGCAGATGAGTACTGGGCGTACATGAAATCTCAAATGAGTGAC
AAAGTGGGAATGACTTTGATGTATTGTTTATTGAGACCAAGGAGTCGGTG
AgtaatgaaaatttcgaataATGATGGCTTTCAAAGAATTAtactacacc
cctgtctcgcaccCAGTGAGGGTCTTTCGCAAAGTGGGAacgaaaatttc
tatcaaaatcatAATGGGGGAAGAAATTCTATTGTCCCCATATTGCTCAT
AATAATATTCGAtgaggatggttttggagtgcaatttttcaaagtcaagT
CAAATTTAAATCTGCCAGCGGGGCTGAAGTTGTAGGGTAATTTTTCCACT
AGGTACGAAATTTTGGCAAAGCTTTTCAATAGGGCGGGGTCCCAGGGGTA
AAAGAAATTGCTTTGATAGCATCTGTTACtcgagaaagaaaaagaagctc
CGAATCGATTTTATTTTGTATAGCTATGAAATACCATATGAAAAAGATTA
TTATATTACCAATATTACCAGTCAGAAACAACTTCAAATTAGCTCATCTT
CTCGGGAAATGTGTACACCGGGTAACTATTTGGTGGTACGCTTAGGCGAC
TTTCGTTCTTAGACGTTAACAATGTTAATTAACAATCGAAACATATTTCA
TATCTAGGGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCA
TTGATCANGACTTTCGTTATTAGATGTTAACAATGTTAATTAACAATCGA
AACATATTTCATATCTAGGGGACGTATCAAGTTGAGAAGTGTCAATGCAG
AAGACCATCCATTGATCATACCAAATTACTTCGACCACCCTGAAGATTTA
AGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCAGCTGCTAT
GAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGGGTGCGAGC
AACATGAGCTAGGTGaatttctttaaatttctttcaaaatttgtttataC
GGTTTACCCTCTCTTGTTCGATCTGCAAGGGATCAAGAATAAGATTGTAA
AGGTTATANagggctgtactgagaaatattgcccgaggtcaagtaacgac
cgagcttgcgaggttgttgcgttgaccgagggcaatattttcagtacagc
ccgagaAAAAaacggtcattattgtatttgttaaccgtttccttcaactt
tgattgatttttagcgctttatccaggaaaaatagcgaaataaagcagaa
aaaacaagcgaaaagagataaaaaattgctataatttctgacgtcagaaa
taaaaaatgagagaaatgatgtcaacgcattgttcattttcctttgaaaa
agtgacgtcacaatgaattttcctaacgacgggcaactNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtactgagaaatattgcc
cgaggttaagtaacgaccgagcttgcgaggttgttgcgttgaccgagggc
aatattttcagtacagcccgaaaaaaaccggtcatcattgtttttgttaa
ccgtttccttcagcttcgattgatttttagctctttatccaggaaaaata
gcgaaataaagcgaaaaaaacaagcgaaaagagataNTATAGATATTACG
ACATTCTACCTAAGAATGGCTTGAATAATTTAATGGTATAAATTTCCAGA
TCTTGAAATATACATTTCCATAGCCAGGGGaatcaaaaatcttttcctCA
CTGATCTCcaactacttgactggatcgggctACCCGTTTATATGAAGCGT
GTCAAGATTTAAAGGTGActagtccgccatcttgttttcaattcttgTCG
CCAACAAtacgattcgaatgttttgagattccaacgttcgaaaatctaag
gTTGAATTGGAAAACAATATGGTAGACTAGTCTACTTTAAAACTTGGCAC
ACTTCCGCGGGAAATTTGTTGGCAGCTATCATATCTAGTGCGTAAAAGAA
TACGATATCTGATGCCACCGCAAAACAATCAGAATTGAATGTATTTCTTT
TCTTAGATTCGGATGACTACCTCCGATGCATAGTTCGAAGAGGAGCGACC
ACCGTTTACCACCCAGTGGGTACGTGCAAAATGGGACCCCATACTGATGA
TCAAGCAGTTGTAGATTCAACATTGAAGGTTTATGGTATCAAAGGATTAC
GTGTTGTCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAAT
GCACCTACTATCATGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGA
CTGGAAAGACAAAAAATCTTATTTGGAGTAAAAATAATCAATGGAATGAG
AAACGGAAATACGACTCCAACTTGCTTCAGTAAATATGCCAGCTTTAGGT
ATTCAAGgtgtttctttaaaaagaattcattAGTAccaaggcgaaaataa
aaaaatgttatgtTTCTNGAattgatgtcaacgcattgttcattttcctt
tgaaaaagtgacgtcacaataaattttcctaacgacgggcaactctggcc
AGTGTAGGCccgcgaaaagaaccaattgcattgcgcaaaaagccgtgtag
cccgctttgaaaaagtaaccggttaacaatgcgTTTTTCTTCATAGAAGA
TAATTTCTAATAATAATAAGATCGTTTTGGGTATNgatttttctgacccg
gccgcagactatggtttcatctatatggttcatcataaagaaaatcaagt
tgaccgttcaagctaaAAAACGTCGTTCGGCTAGATATTCCCTCTTGTAA
ATCAGTaattcgttagtagttgatacattagtattcagggtttacttcat
actgtttgtacataaaagttatcttcaaagttctatttcaatgatccgGC
TGNcttaacttttttcgtttttatcagtttgagttatttatatatcaata
cttttctttttctaaaatgacagatattacatatcttcacta Coding sequence (CDS) from alignment at sc0000045:757988..763379+ >TCONS_00004529 ID=TCONS_00004529|Name=TCONS_00004529|organism=Clytia hemisphaerica|type=CDS|length=9495bp|location=Sequence derived from alignment at sc0000045:757988..763379+ (Clytia hemisphaerica) ATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATA TTATGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCT TCAATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTT AAAGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAAT AGTTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTG TTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTC GAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTA CACTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATG AGGATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCG CGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATAC TAGGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAG GGTGGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAA AGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACT TCCTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAA ATGCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAA CAGACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATG CAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCA GTCCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACA GCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGC AAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCC TAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATT CCGATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAA CTATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAG ATTACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGG TATCTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGA ATCTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGT TGATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAG TACTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTT GATGTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAA GTGTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCAC CCTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACT TGCAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAAC CTGGGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATA GTTCGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAAT GGGACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTT ATGGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATT GTCAGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGC TGATATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAA TGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATAT TATGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTT CAATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTA AAGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATA GTTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGT TGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCG AAGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTAC ACTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGA GGATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGC GTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACT AGGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGG GTGGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAA GGACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTT CCTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAA TGCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAAC AGACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGC AGTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAG TCCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAG CCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCA AGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCT AATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTC CGATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAAC TATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGA TTACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGT ATCTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAA TCTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTT GATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGT ACTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTG ATGTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAG TGTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACC CTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTT GCAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACC TGGGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAG TTCGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATG GGACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTA TGGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTG TCAGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCT GATATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAAT GGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATATT ATGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTTC AATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTAA AGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAG TTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTT GTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGA AGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTACA CTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGAG GATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGCG TGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACTA GGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGGG TGGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAAG GACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTTC CTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAAT GCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAACA GACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGCA GTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAGT CCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAGC CAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAA GAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCTA ATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTCC GATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAACT ATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGAT TACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGTA TCTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAAT CTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTTG ATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGTA CTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTGA TGTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAGT GTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACCC TGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTG CAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCT GGGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAGT TCGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATGG GACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTAT GGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGT CAGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCTG ATATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAATG GGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATATTA TGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTTCA ATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTAAA GACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGT TGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTTG TTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGAA GCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTACAC TGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGAGG ATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGCGT GGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACTAG GGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGGGT GGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAAGG ACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTTCC TGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAATG CTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAACAG ACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGCAG TACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAGTC CATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAGCC AAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAAG AAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCTAA TGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTCCG ATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAACTA TATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGATT ACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGTAT CTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAATC TGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTTGA TTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGTAC TGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTGAT GTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAGTG TCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACCCT GAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGC AGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTG GGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAGTT CGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATGGG ACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTATG GTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGTC AGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCTGA TATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAATGG GCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATATTAT GGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTTCAA TTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTAAAG ACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGTT GATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTTGT TGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGAAG CTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTACACT GCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGAGGA TGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGCGTG GTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACTAGG GGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGGGTG GAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAAGGA CTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTTCCT GTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAATGC TTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAACAGA CAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGCAGT ACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAGTCC ATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAGCCA AAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAAGA AAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCTAAT GCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTCCGA TCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAACTAT ATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGATTA CTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGTATC TCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAATCT GAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTTGAT TGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGTACT GGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTGATG TATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAGTGT CAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACCCTG AAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCA GCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGG GTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAGTTC GAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATGGGA CCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTATGG TATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGTCA GTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCTGAT ATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004529-exon-sc0000045-1491911889:757988..759047 | TCONS_00004529-exon-sc0000045-1491911889:757988..759047 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1510915933:757988..759047 | TCONS_00004529-exon-sc0000045-1510915933:757988..759047 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1575043694:757988..759047 | TCONS_00004529-exon-sc0000045-1575043694:757988..759047 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1491911889:759350..759504 | TCONS_00004529-exon-sc0000045-1491911889:759350..759504 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1510915933:759350..759504 | TCONS_00004529-exon-sc0000045-1510915933:759350..759504 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1575043694:759350..759504 | TCONS_00004529-exon-sc0000045-1575043694:759350..759504 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1491911889:760006..760284 | TCONS_00004529-exon-sc0000045-1491911889:760006..760284 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1510915933:760006..760284 | TCONS_00004529-exon-sc0000045-1510915933:760006..760284 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1575043694:760006..760284 | TCONS_00004529-exon-sc0000045-1575043694:760006..760284 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1491911889:760956..761149 | TCONS_00004529-exon-sc0000045-1491911889:760956..761149 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1510915933:760956..761149 | TCONS_00004529-exon-sc0000045-1510915933:760956..761149 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1575043694:760956..761149 | TCONS_00004529-exon-sc0000045-1575043694:760956..761149 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1491911889:762444..763379 | TCONS_00004529-exon-sc0000045-1491911889:762444..763379 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1510915933:762444..763379 | TCONS_00004529-exon-sc0000045-1510915933:762444..763379 | Clytia hemisphaerica | exon |
TCONS_00004529-exon-sc0000045-1575043694:762444..763379 | TCONS_00004529-exon-sc0000045-1575043694:762444..763379 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000045 | supercontig | sc0000045:757988..763379 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
Term | Definition |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
molecular_function |
GO:0016491 |
oxidoreductase activity |
molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
BLAST of TCONS_00004529 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2) HSP 1 Score: 291.197 bits (744), Expect = 1.348e-86 Identity = 221/588 (37.59%), Postives = 311/588 (52.89%), Query Frame = 2
Query: 242 FATGDDQIVDEYDFXXXXXXXXXXXXXNRLSENKSWKILLLEAGGGETIHTEVAGFQYTA--IRLGAS-----------WDYMTEKHEDGITSTNQKNGQV-YWPRGKILGGSSSINALIYTRGNKRDYDSWKEQGNPGWSYEDVLQYFKKSEDQRTENLVDSKFHSTGGPLPVEQAVVDLPMIQDCINACSKI-LSYNPDYNGEKQTGCFFHQLTRRDGLRCSTAKAYLKP--KRSNLHVSPFSHVQKILIDPETKTAKGVLYKKNGKSMTVKARKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIKELQ-VGYNLQDHVN-YIDY-----LFFNDSVSFRYEDYLSYDALQKLLNERKGYLTQTLPIGTFIPLTKESEEKDWPEIQMHYITGLIANFYDFNPFFNIADEYWAYMKSQMSDKVGMTLMYCLLRPRSRGRIKLRSVNAEDHPLIIPNYFDHPEDLREFVEGMKFTKKLAAAMKHLNASTYRGKE--PGCEQHELDSDDYLRCIVRRGATTVYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVVDASIMPTIVSGNTNAPTIMIAEKAADIIK 1927
A+ + DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG + + AG + + I + A+ W Y TE + G+ +G+V YWPRG++ GGSSS+NA++Y RG+ DY+ W+ QG GW Y L YF+K++ L S++ GPL V + + P+ + A + D NG +Q G + +T +G R S A AYL P R+NL + V ++L E A GV Y KNG+S A KEVILS GA+ SPQ+LMLSG+G ++L+K GIP++ L VG NLQDH+ YI + + + + + + L K E T L G FI + P+IQ H+ L + D + Y ++ +R S G +KLRS N +DHP+I PNY D+ +F +K T+++ A + +RGKE PG + SD + VR A + YHP TCKMG +D AVVD +V G++ LRVVDASIMP++VSGN NAPTIMIAEKAADIIK
Sbjct: 30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVL----AGSKRLSWKIHMPAALVANLCDDRYNWCYHTEV-QRGL------DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGA---TAHLETGGFI---RSQPGVPHPDIQFHF---LPSQVIDHGRVPTQQEAYQVHVGP--------------MRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFA---QEALAPFRGKELQPGS---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
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