TCONS_00004529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004529
Unique NameTCONS_00004529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004529 ID=TCONS_00004529|Name=TCONS_00004529|organism=Clytia hemisphaerica|type=transcript|length=2624bp
ATCGTTTCAGAGTAATCAAACTATTAAACAAATATGTTAAAACATTTCTG
GCATTTCCACTAAAATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTG
CCATTAGCTATATATTATGGATGCAAACTCGTTAAAGactattttattgt
ttttgcaTTGATCTTCAATTTCTTGACGACAACTTTCTTTCCAAATTTGA
ATTTGGAATGTTTTAAAGACTTTAATCCTGACATTGCAGATTTTGCGACA
GGAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGG
ATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGA
AAATTCTTCTACTCGAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTA
GCAGGCTTTCAGTACACTGCTATCCGATTAGGTGCTAGTTGGGATTATAT
GACAGAAAAACATGAGGATGGAATCACCTCTACCAATCAAAAGAATGGAC
AAGTTTATTGGCCGCGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAAT
GCTTTGATTTATACTAGGGGAAATAAACGAGATTATGATTCATGGAAGGA
GCAAGGTAACCCAGGGTGGAGTTATGAAGATGTTTTacaatactttaaaa
agtctgAAGACCAAAGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCT
ACAGGTGGTCCACTTCCTGTGGAACAAGCCGTTGTAGACCTACCTATGAT
TCAAGATTGTATAAATGCTTGCTCCAAGATACTGTCTTATAACCCTGACT
ACAATGGAGAAAAACAGACAGGGTGCTTCTTTCATCAATTAACAAGACGC
GACGGTCTTCGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATC
AAATCTTCACGTCAGTCCATTTTCACATGTTCAGAAGATTCTGATTGACC
CTGAAACGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCC
ATGACAGTCAAAGCAAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGC
TTCTCCCCAGATCCTAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGG
AAAAACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAACTTA
CAAGATCATGTCAACTATATCGATTACTTGTTTTTCAATGATAGTGTTTC
CTTCCGATATGAAGATTACTTGAGTTATGATGCACTGCAGAAACTATTGA
ACGAAAGAAAAGGGTATCTCACGCAAACACTACCTATTGGAACTTTCATA
CCGTTGACCAAAGAATCTGAAGAAAAGGATTGGCCTGAAATACAAATGCA
TTACATCACTGGGTTGATTGCAAATTTCTATGACTTTAACCCGTTTTTCA
ACATTGCAGATGAGTACTGGGCGTACATGAAATCTCAAATGAGTGACAAA
GTGGGAATGACTTTGATGTATTGTTTATTGAGACCAAGGAGTCGGGGACG
TATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCATTGATCATACCAA
ATTACTTCGACCACCCTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAA
TTCACCAAGAAACTTGCAGCTGCTATGAAACATTTAAATGCTTCAACTTA
TCGCGGTAAAGAACCTGGGTGCGAGCAACATGAGCTAGATTCGGATGACT
ACCTCCGATGCATAGTTCGAAGAGGAGCGACCACCGTTTACCACCCAGTG
GGTACGTGCAAAATGGGACCCCATACTGATGATCAAGCAGTTGTAGATTC
AACATTGAAGGTTTATGGTATCAAAGGATTACGTGTTGTCGATGCATCAA
TCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACTATCATGATC
GCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAAAGACAAAAAATC
TTATTTGGAGTAAAAATAATCAATGGAATGAGAAACGGAAATACGACTCC
AACTTGCTTCAGTAAATATGCCAGCTTTAGGTATTCAAGgtgtttcttta
aaaagaattcattAGTAccaaggcgaaaataaaaaaatgttatgtTTCTN
GAattgatgtcaacgcattgttcattttcctttgaaaaagtgacgtcaca
ataaattttcctaacgacgggcaactctggccAGTGTAGGCccgcgaaaa
gaaccaattgcattgcgcaaaaagccgtgtagcccgctttgaaaaagtaa
ccggttaacaatgcgTTTTTCTTCATAGAAGATAATTTCTAATAATAATA
AGATCGTTTTGGGTATNgatttttctgacccggccgcagactatggtttc
atctatatggttcatcataaagaaaatcaagttgaccgttcaagctaaAA
AACGTCGTTCGGCTAGATATTCCCTCTTGTAAATCAGTaattcgttagta
gttgatacattagtattcagggtttacttcatactgtttgtacataaaag
ttatcttcaaagttctatttcaatgatccgGCTGNcttaacttttttcgt
ttttatcagtttgagttatttatatatcaatacttttctttttctaaaat
gacagatattacatatcttcacta
Run BLAST on NCBI

protein sequence of TCONS_00004529-protein

>TCONS_00004529-protein ID=TCONS_00004529-protein|Name=TCONS_00004529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MGWKKKAGILFLPLAIYYGCKLVKDYFIVFALIFNFLTTTFFPNLNLECF
KDFNPDIADFATGDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLL
EAGGGETIHTEVAGFQYTAIRLGASWDYMTEKHEDGITSTNQKNGQVYWP
RGKILGGSSSINALIYTRGNKRDYDSWKEQGNPGWSYEDVLQYFKKSEDQ
RTENLVDSKFHSTGGPLPVEQAVVDLPMIQDCINACSKILSYNPDYNGEK
QTGCFFHQLTRRDGLRCSTAKAYLKPKRSNLHVSPFSHVQKILIDPETKT
AKGVLYKKNGKSMTVKARKEVILSAGAVASPQILMLSGVGPKEELEKHGI
PIIKELQVGYNLQDHVNYIDYLFFNDSVSFRYEDYLSYDALQKLLNERKG
YLTQTLPIGTFIPLTKESEEKDWPEIQMHYITGLIANFYDFNPFFNIADE
YWAYMKSQMSDKVGMTLMYCLLRPRSRGRIKLRSVNAEDHPLIIPNYFDH
PEDLREFVEGMKFTKKLAAAMKHLNASTYRGKEPGCEQHELDSDDYLRCI
VRRGATTVYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVVDASIMPTI
VSGNTNAPTIMIAEKAADIIKEDWKDKKSYLE
Run BLAST on NCBI

transcript from alignment at sc0000045:757988..763379+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004529 ID=TCONS_00004529|Name=TCONS_00004529|organism=Clytia hemisphaerica|type=transcript|length=5392bp|location=Sequence derived from alignment at sc0000045:757988..763379+ (Clytia hemisphaerica)
ATCGTTTCAGAGTAATCAAACTATTAAACAAATATGTTAAAACATTTCTG
GCATTTCCACTAAAATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTG
CCATTAGCTATATATTATGGATGCAAACTCGTTAAAGactattttattgt
ttttgcaTTGATCTTCAATTTCTTGACGACAACTTTCTTTCCAAATTTGA
ATTTGGAATGTTTTAAAGACTTTAATCCTGACATTGCAGATTTTGCGACA
GGAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGG
ATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGA
AAATTCTTCTACTCGAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTA
GCAGGCTTTCAGTACACTGCTATCCGATTAGGTGCTAGTTGGGATTATAT
GACAGAAAAACATGAGGATGGAATCACCTCTACCAATCAAAAGAATGGAC
AAGTTTATTGGCCGCGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAAT
GCTTTGATTTATACTAGGGGAAATAAACGAGATTATGATTCATGGAAGGA
GCAAGGTAACCCAGGGTGGAGTTATGAAGATGTTTTacaatactttaaaa
agtctgAAGACCAAAGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCT
ACAGGTGGTCCACTTCCTGTGGAACAAGCCGTTGTAGACCTACCTATGAT
TCAAGATTGTATAAATGCTTGCTCCAAGATACTGTCTTATAACCCTGACT
ACAATGGAGAAAAACAGACAGGGTGCTTCTTTCATCAATTAACAAGACGC
GACGGTCTTCGATGCAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATC
AAATCTTCACGTCAGTCCATTTTCACATGTTCAGAAGATTCTGATTGACC
CTGAAACGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCC
ATGACAGTCAAAGCAAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGC
TTCTCCCCAGGTAAATGATTTAGACATCAGACTTCCTTTTAAGTCAAACT
TTGCTACActtatactctcgggtaccaattagccggggggtttggcataa
gcggggggttggaaaaaatctcaaaNNNNNNNNNNNNNGGGGggagggtt
ggaataaaaatgtcaggggtgaaaaatttcgcaaaaGTTAATTAGCGGGG
CCCCcgactattaggtacccgagagtaagtaaAGATCTTGATATTCAAAT
CTGAAAAGGTTCTTTAGAACGTGGTAGATTGTAATTCATAATCATCTAAC
TTCTTGTTACAGATCCTAATGCTATCAGGAGTTGGACCAAAGGAGGAATT
GGAAAAACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAACT
TACAAGATCATGTCAACTATATCGATTACTTGTTTTTCAATGATAGTGTT
TCCTTCCGATATGAAGAGTAAGCACATATTTGATGAAGTTTTTGCTGTAT
TGGGATCTTGCAGGAAAATATACATCACCTCCTATATTGCAGTGGATAAG
TGATTATTGACCTCCTTAAAAAACAGCAAGTTCAGGCATCAGTTGAACCA
ATAGACTATTCCATTGATAATGAGCTGttaacactgacctttatatatcc
ctggaacaagttactcaatgccggccaagcaaaatattatgatcggaTTG
AGCGCTAGATTTAATTTCGCTTGTACactaatgatgtagcgccgtttgtc
gttaggcaaagtttcaaacactacaatggcttctttgcgggcaccaactt
tcaaaaaacttagtACTGGGTTTGTATAAATCTCAGTGGGTTTTAAACAT
CTTGAATTCAAAGTTTTTGGTTACCTTACTTACTTCTTTACCAATGGAAC
GACAGAAGCTTTTCTTAAAGTTCCCAAACTCTTAACACCTTTATCTGTAA
TTTGCCACTTTTTTTCAGTTACTTGAGTTATGATGCACTGCAGAAACTAT
TGAACGAAAGAAAAGGGTATCTCACGCAAACACTACCTATTGGAACTTTC
ATACCGTTGACCAAAGAATCTGAAGAAAAGGATTGGCCTGAAATACAAAT
GCATTACATCACTGGGTTGATTGCAAATTTCTATGACTTTAACCCGTTTT
TCAACATTGCAGATGAGTACTGGGCGTACATGAAATCTCAAATGAGTGAC
AAAGTGGGAATGACTTTGATGTATTGTTTATTGAGACCAAGGAGTCGGTG
AgtaatgaaaatttcgaataATGATGGCTTTCAAAGAATTAtactacacc
cctgtctcgcaccCAGTGAGGGTCTTTCGCAAAGTGGGAacgaaaatttc
tatcaaaatcatAATGGGGGAAGAAATTCTATTGTCCCCATATTGCTCAT
AATAATATTCGAtgaggatggttttggagtgcaatttttcaaagtcaagT
CAAATTTAAATCTGCCAGCGGGGCTGAAGTTGTAGGGTAATTTTTCCACT
AGGTACGAAATTTTGGCAAAGCTTTTCAATAGGGCGGGGTCCCAGGGGTA
AAAGAAATTGCTTTGATAGCATCTGTTACtcgagaaagaaaaagaagctc
CGAATCGATTTTATTTTGTATAGCTATGAAATACCATATGAAAAAGATTA
TTATATTACCAATATTACCAGTCAGAAACAACTTCAAATTAGCTCATCTT
CTCGGGAAATGTGTACACCGGGTAACTATTTGGTGGTACGCTTAGGCGAC
TTTCGTTCTTAGACGTTAACAATGTTAATTAACAATCGAAACATATTTCA
TATCTAGGGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCA
TTGATCANGACTTTCGTTATTAGATGTTAACAATGTTAATTAACAATCGA
AACATATTTCATATCTAGGGGACGTATCAAGTTGAGAAGTGTCAATGCAG
AAGACCATCCATTGATCATACCAAATTACTTCGACCACCCTGAAGATTTA
AGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCAGCTGCTAT
GAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGGGTGCGAGC
AACATGAGCTAGGTGaatttctttaaatttctttcaaaatttgtttataC
GGTTTACCCTCTCTTGTTCGATCTGCAAGGGATCAAGAATAAGATTGTAA
AGGTTATANagggctgtactgagaaatattgcccgaggtcaagtaacgac
cgagcttgcgaggttgttgcgttgaccgagggcaatattttcagtacagc
ccgagaAAAAaacggtcattattgtatttgttaaccgtttccttcaactt
tgattgatttttagcgctttatccaggaaaaatagcgaaataaagcagaa
aaaacaagcgaaaagagataaaaaattgctataatttctgacgtcagaaa
taaaaaatgagagaaatgatgtcaacgcattgttcattttcctttgaaaa
agtgacgtcacaatgaattttcctaacgacgggcaactNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtactgagaaatattgcc
cgaggttaagtaacgaccgagcttgcgaggttgttgcgttgaccgagggc
aatattttcagtacagcccgaaaaaaaccggtcatcattgtttttgttaa
ccgtttccttcagcttcgattgatttttagctctttatccaggaaaaata
gcgaaataaagcgaaaaaaacaagcgaaaagagataNTATAGATATTACG
ACATTCTACCTAAGAATGGCTTGAATAATTTAATGGTATAAATTTCCAGA
TCTTGAAATATACATTTCCATAGCCAGGGGaatcaaaaatcttttcctCA
CTGATCTCcaactacttgactggatcgggctACCCGTTTATATGAAGCGT
GTCAAGATTTAAAGGTGActagtccgccatcttgttttcaattcttgTCG
CCAACAAtacgattcgaatgttttgagattccaacgttcgaaaatctaag
gTTGAATTGGAAAACAATATGGTAGACTAGTCTACTTTAAAACTTGGCAC
ACTTCCGCGGGAAATTTGTTGGCAGCTATCATATCTAGTGCGTAAAAGAA
TACGATATCTGATGCCACCGCAAAACAATCAGAATTGAATGTATTTCTTT
TCTTAGATTCGGATGACTACCTCCGATGCATAGTTCGAAGAGGAGCGACC
ACCGTTTACCACCCAGTGGGTACGTGCAAAATGGGACCCCATACTGATGA
TCAAGCAGTTGTAGATTCAACATTGAAGGTTTATGGTATCAAAGGATTAC
GTGTTGTCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAAT
GCACCTACTATCATGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGA
CTGGAAAGACAAAAAATCTTATTTGGAGTAAAAATAATCAATGGAATGAG
AAACGGAAATACGACTCCAACTTGCTTCAGTAAATATGCCAGCTTTAGGT
ATTCAAGgtgtttctttaaaaagaattcattAGTAccaaggcgaaaataa
aaaaatgttatgtTTCTNGAattgatgtcaacgcattgttcattttcctt
tgaaaaagtgacgtcacaataaattttcctaacgacgggcaactctggcc
AGTGTAGGCccgcgaaaagaaccaattgcattgcgcaaaaagccgtgtag
cccgctttgaaaaagtaaccggttaacaatgcgTTTTTCTTCATAGAAGA
TAATTTCTAATAATAATAAGATCGTTTTGGGTATNgatttttctgacccg
gccgcagactatggtttcatctatatggttcatcataaagaaaatcaagt
tgaccgttcaagctaaAAAACGTCGTTCGGCTAGATATTCCCTCTTGTAA
ATCAGTaattcgttagtagttgatacattagtattcagggtttacttcat
actgtttgtacataaaagttatcttcaaagttctatttcaatgatccgGC
TGNcttaacttttttcgtttttatcagtttgagttatttatatatcaata
cttttctttttctaaaatgacagatattacatatcttcacta

Coding sequence (CDS) from alignment at sc0000045:757988..763379+

>TCONS_00004529 ID=TCONS_00004529|Name=TCONS_00004529|organism=Clytia hemisphaerica|type=CDS|length=9495bp|location=Sequence derived from alignment at sc0000045:757988..763379+ (Clytia hemisphaerica)
ATGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATA
TTATGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCT
TCAATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTT
AAAGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAAT
AGTTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTG
TTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTC
GAAGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTA
CACTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATG
AGGATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCG
CGTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATAC
TAGGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAG
GGTGGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAA
AGGACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACT
TCCTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAA
ATGCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAA
CAGACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATG
CAGTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCA
GTCCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACA
GCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGC
AAGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCC
TAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATT
CCGATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAA
CTATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAG
ATTACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGG
TATCTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGA
ATCTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGT
TGATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAG
TACTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTT
GATGTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAA
GTGTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCAC
CCTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACT
TGCAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAAC
CTGGGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATA
GTTCGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAAT
GGGACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTT
ATGGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATT
GTCAGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGC
TGATATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAA
TGGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATAT
TATGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTT
CAATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTA
AAGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATA
GTTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGT
TGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCG
AAGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTAC
ACTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGA
GGATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGC
GTGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACT
AGGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGG
GTGGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAA
GGACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTT
CCTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAA
TGCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAAC
AGACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGC
AGTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAG
TCCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAG
CCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCA
AGAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCT
AATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTC
CGATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAAC
TATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGA
TTACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGT
ATCTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAA
TCTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTT
GATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGT
ACTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTG
ATGTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAG
TGTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACC
CTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTT
GCAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACC
TGGGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAG
TTCGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATG
GGACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTA
TGGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTG
TCAGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCT
GATATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAAT
GGGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATATT
ATGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTTC
AATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTAA
AGACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAG
TTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTT
GTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGA
AGCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTACA
CTGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGAG
GATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGCG
TGGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACTA
GGGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGGG
TGGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAAG
GACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTTC
CTGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAAT
GCTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAACA
GACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGCA
GTACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAGT
CCATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAGC
CAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAA
GAAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCTA
ATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTCC
GATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAACT
ATATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGAT
TACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGTA
TCTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAAT
CTGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTTG
ATTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGTA
CTGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTGA
TGTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAGT
GTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACCC
TGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTG
CAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCT
GGGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAGT
TCGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATGG
GACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTAT
GGTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGT
CAGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCTG
ATATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAATG
GGCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATATTA
TGGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTTCA
ATTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTAAA
GACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGT
TGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTTG
TTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGAA
GCTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTACAC
TGCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGAGG
ATGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGCGT
GGTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACTAG
GGGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGGGT
GGAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAAGG
ACTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTTCC
TGTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAATG
CTTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAACAG
ACAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGCAG
TACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAGTC
CATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAGCC
AAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAAG
AAAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCTAA
TGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTCCG
ATCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAACTA
TATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGATT
ACTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGTAT
CTCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAATC
TGAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTTGA
TTGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGTAC
TGGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTGAT
GTATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAGTG
TCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACCCT
GAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGC
AGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTG
GGTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAGTT
CGAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATGGG
ACCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTATG
GTATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGTC
AGTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCTGA
TATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAAATGG
GCTGGAAGAAAAAAGCTGGAATACTTTTCCTGCCATTAGCTATATATTAT
GGATGCAAACTCGTTAAAGactattttattgtttttgcaTTGATCTTCAA
TTTCTTGACGACAACTTTCTTTCCAAATTTGAATTTGGAATGTTTTAAAG
ACTTTAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAATAGTT
GATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTTGT
TGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGAAG
CTGGTGGAGGGGAAACTATCCATACCGAAGTAGCAGGCTTTCAGTACACT
GCTATCCGATTAGGTGCTAGTTGGGATTATATGACAGAAAAACATGAGGA
TGGAATCACCTCTACCAATCAAAAGAATGGACAAGTTTATTGGCCGCGTG
GTAAAATTCTCGGTGGGAGCAGCTCAATTAATGCTTTGATTTATACTAGG
GGAAATAAACGAGATTATGATTCATGGAAGGAGCAAGGTAACCCAGGGTG
GAGTTATGAAGATGTTTTacaatactttaaaaagtctgAAGACCAAAGGA
CTGAGAATTTGGTAGATTCCAAGTTCCATTCTACAGGTGGTCCACTTCCT
GTGGAACAAGCCGTTGTAGACCTACCTATGATTCAAGATTGTATAAATGC
TTGCTCCAAGATACTGTCTTATAACCCTGACTACAATGGAGAAAAACAGA
CAGGGTGCTTCTTTCATCAATTAACAAGACGCGACGGTCTTCGATGCAGT
ACAGCCAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAGTCC
ATTTTCACATGTTCAGAAGATTCTGATTGACCCTGAAACGAAAACAGCCA
AAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAAGA
AAAGAAGTTATCTTGTCTGCTGGAGCTGTTGCTTCTCCCCAGATCCTAAT
GCTATCAGGAGTTGGACCAAAGGAGGAATTGGAAAAACATGGAATTCCGA
TCATCAAAGAACTTCAAGTTGGATACAACTTACAAGATCATGTCAACTAT
ATCGATTACTTGTTTTTCAATGATAGTGTTTCCTTCCGATATGAAGATTA
CTTGAGTTATGATGCACTGCAGAAACTATTGAACGAAAGAAAAGGGTATC
TCACGCAAACACTACCTATTGGAACTTTCATACCGTTGACCAAAGAATCT
GAAGAAAAGGATTGGCCTGAAATACAAATGCATTACATCACTGGGTTGAT
TGCAAATTTCTATGACTTTAACCCGTTTTTCAACATTGCAGATGAGTACT
GGGCGTACATGAAATCTCAAATGAGTGACAAAGTGGGAATGACTTTGATG
TATTGTTTATTGAGACCAAGGAGTCGGGGACGTATCAAGTTGAGAAGTGT
CAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACCCTG
AAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCA
GCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGG
GTGCGAGCAACATGAGCTAGATTCGGATGACTACCTCCGATGCATAGTTC
GAAGAGGAGCGACCACCGTTTACCACCCAGTGGGTACGTGCAAAATGGGA
CCCCATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAGGTTTATGG
TATCAAAGGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGTCA
GTGGAAATACTAATGCACCTACTATCATGATCGCTGAAAAAGCTGCTGAT
ATCATCAAAGAGGACTGGAAAGACAAAAAATCTTATTTGGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002548XLOC_002548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004529-exon-sc0000045-1491911889:757988..759047TCONS_00004529-exon-sc0000045-1491911889:757988..759047Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1510915933:757988..759047TCONS_00004529-exon-sc0000045-1510915933:757988..759047Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1575043694:757988..759047TCONS_00004529-exon-sc0000045-1575043694:757988..759047Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1491911889:759350..759504TCONS_00004529-exon-sc0000045-1491911889:759350..759504Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1510915933:759350..759504TCONS_00004529-exon-sc0000045-1510915933:759350..759504Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1575043694:759350..759504TCONS_00004529-exon-sc0000045-1575043694:759350..759504Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1491911889:760006..760284TCONS_00004529-exon-sc0000045-1491911889:760006..760284Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1510915933:760006..760284TCONS_00004529-exon-sc0000045-1510915933:760006..760284Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1575043694:760006..760284TCONS_00004529-exon-sc0000045-1575043694:760006..760284Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1491911889:760956..761149TCONS_00004529-exon-sc0000045-1491911889:760956..761149Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1510915933:760956..761149TCONS_00004529-exon-sc0000045-1510915933:760956..761149Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1575043694:760956..761149TCONS_00004529-exon-sc0000045-1575043694:760956..761149Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1491911889:762444..763379TCONS_00004529-exon-sc0000045-1491911889:762444..763379Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1510915933:762444..763379TCONS_00004529-exon-sc0000045-1510915933:762444..763379Clytia hemisphaericaexon
TCONS_00004529-exon-sc0000045-1575043694:762444..763379TCONS_00004529-exon-sc0000045-1575043694:762444..763379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004529-proteinTCONS_00004529-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:757988..763379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.743164	0.409302	0.579779	0.308206	3.49594	2.38674	3.22426	2.79065	2.37852	2.37828	2.78366	1.29646	1.19891	1.55019	0.696689	2.96223	0.886858	0.348651	0.268216	0.170032	0.133737	0	2.71374e-09	0.385727	4.36429	3.0464	1.07488	1.43857	0.17524	0.3191
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007867GMC_OxRtase_C
IPR012132GMC_OxRdtase
IPR000172GMC_OxRdtase_N
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Blast
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BLAST of TCONS_00004529 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 1.348e-86
Identity = 221/588 (37.59%), Postives = 311/588 (52.89%), Query Frame = 2 
Query:  242 FATGDDQIVDEYDFXXXXXXXXXXXXXNRLSENKSWKILLLEAGGGETIHTEVAGFQYTA--IRLGAS-----------WDYMTEKHEDGITSTNQKNGQV-YWPRGKILGGSSSINALIYTRGNKRDYDSWKEQGNPGWSYEDVLQYFKKSEDQRTENLVDSKFHSTGGPLPVEQAVVDLPMIQDCINACSKI-LSYNPDYNGEKQTGCFFHQLTRRDGLRCSTAKAYLKP--KRSNLHVSPFSHVQKILIDPETKTAKGVLYKKNGKSMTVKARKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIKELQ-VGYNLQDHVN-YIDY-----LFFNDSVSFRYEDYLSYDALQKLLNERKGYLTQTLPIGTFIPLTKESEEKDWPEIQMHYITGLIANFYDFNPFFNIADEYWAYMKSQMSDKVGMTLMYCLLRPRSRGRIKLRSVNAEDHPLIIPNYFDHPEDLREFVEGMKFTKKLAAAMKHLNASTYRGKE--PGCEQHELDSDDYLRCIVRRGATTVYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVVDASIMPTIVSGNTNAPTIMIAEKAADIIK 1927
             A+   +  DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG  + +    AG +  +  I + A+           W Y TE  + G+      +G+V YWPRG++ GGSSS+NA++Y RG+  DY+ W+ QG  GW Y   L YF+K++      L  S++    GPL V +   + P+    + A  +       D NG +Q G  +  +T  +G R S A AYL P   R+NL     + V ++L   E   A GV Y KNG+S    A KEVILS GA+ SPQ+LMLSG+G  ++L+K GIP++  L  VG NLQDH+  YI       +  + +     +  +  + L K   E     T  L  G FI   +       P+IQ H+   L +   D        + Y  ++                +R  S G +KLRS N +DHP+I PNY     D+ +F   +K T+++ A       + +RGKE  PG     + SD  +   VR  A + YHP  TCKMG  +D  AVVD   +V G++ LRVVDASIMP++VSGN NAPTIMIAEKAADIIK
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVL----AGSKRLSWKIHMPAALVANLCDDRYNWCYHTEV-QRGL------DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGA---TAHLETGGFI---RSQPGVPHPDIQFHF---LPSQVIDHGRVPTQQEAYQVHVGP--------------MRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFA---QEALAPFRGKELQPGS---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00004529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH1.348e-8637.59Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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