TCONS_00004486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004486
Unique NameTCONS_00004486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004486 ID=TCONS_00004486|Name=TCONS_00004486|organism=Clytia hemisphaerica|type=transcript|length=1873bp
caagattatttgaaaatgcATTCCTGACTTTTGCATTCGCTTTGACTATT
GTTAATGTTTTATGCTTCACGATGTTTGGTTTATTTTGTGATTGTGACTT
TTAAATGATGACGATAAACACAAGGAAAAATTATTCATTCTTCGTGTTTA
GCTCGGGCTGGAGCTCTTTGATCATTAGTGCCTCAATGATTAAGATGTCA
TCGATTGATAGATTGCGTTCTTGTAAGTGTTTTCCCACTTGGCCCCAACT
CCCACTCCCtgaatttaaatttgatttctttattttcccaTTTTATAGca
taaaaaaacagaaaagaatTAAACAGATCATCAGTGTTAAATACAATAAA
CGCAAAAGAGAAGGCCTTGTGAAAGAAAATCCTACTACTATCTGTTAGCC
TTTCTTTGGTGACTTGGCCATTTGGACATTCAAAGCTATCACCAAGTGCA
AGTCACTGACAAGGAAGCAACATAATATCATCCCATCTCCGAtttaaaga
aaatccatttcaaaaattcttgaaCAATTTCAAAGAATAAACAAGTAACA
GTGACAAACAAAGAAACTACCCTGTAAAGAATCCAATCCGAAAATTTTGT
CCATTCTTGTGAAACTTTGGCTCAGTTTTTGTTTAATATTCGAACAAAAA
CAGATACAAATAAACCATGGCATCAAACGCAGCAGTGAAAGCCTTACAAC
TGGAAATGAAAAACATTACTAAAGATCCTGTTGAAGGAGTCTTGATCGAA
TTACAAGACGAAAACAACCTTTTCGAATGGAGTGTAGGCGTTTTTGGACC
GCCCAAAACGTTGTATGAGGGCGGTTATTTCAAGGCAAAGATCAATTTCC
CTCAAGATTATCCGTACTCTCCACCCACTTTCAAATTCTTGACTAAAATG
TGGCATCCCAATATTTATGAGTCAGGTGATGTTTGCATTTCCATCTTGCA
TCCACCAATAGACGACCCACAGAGTGGCGAGCTTCCTCAGGAACGATGGA
ACCCTACTCAAAACGTCAGAACCATTTTATTATCTGTCATCTCGATGTTG
AACGAGCCGAATACCTTTTCGCCTGCCAACGTCGACGCGTCCGTCATGTA
TCGAAAGTTGGTCGTCAGCAAGGGCAAAGACAAAGCTTATGAGGATATGG
TCAAaaAACAAGTTGCCGCGAGTCGTGAAGCTGCTTCAAAAGAAGGGATC
GTCATCCCTGCTTCTATCGAAGAATACTGCATTNCAAGTTGCTGCGAGTC
GCGAAGCCGCTTCAAAAGAAGGGATCGTCATCCCTGCCTCCATCGAAGAA
TACTGCATCAAACACAAGCCGATCGGATCACAATCGTCGGATACGAACAT
TGATCTTTGCGACGATTGGTACGACGATTATGACGTCGATGATGATTATG
ACGAAGAAGATGATGACTACGAGTGTTTTGACGACAATGATGACTCGGGA
ACTGCCGACGATTGATTGGTTCAAATATTCGGCGACCCGATGAAAAACGA
CAATTTTTTCGCGCCTTTTCGACGTCAACACACTGGTCGTTTAGAAGTCA
GGATGTTTGGTGTGACGAGTGTTATCGAACGATTTGTCGGCTTTTTTCTT
CGTCGAGATAATGGTGGGATAGCAAATTGTCGTTTTTCGAAGAGTCGTTT
GCCTGTGATGaagttaaaaaagtttaaaaatgataGAGGAGAGGAGATTA
AAGTCTTGAAAGAGAAGATTCTTTCACGTTGACAGTTCTCAGTTAACCTG
AATCCctctgaaatgatggaatcagggGGTGATGAGTGGAAACGCAATAA
ATTAACATTCAGGTAAATTGGTTCCTTGATGTTTGtgtatgattgttttt
tttcaggttgACTTATAAAGTTN
Run BLAST on NCBI

protein sequence of TCONS_00004486-protein

>TCONS_00004486-protein ID=TCONS_00004486-protein|Name=TCONS_00004486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MASNAAVKALQLEMKNITKDPVEGVLIELQDENNLFEWSVGVFGPPKTLY
EGGYFKAKINFPQDYPYSPPTFKFLTKMWHPNIYESGDVCISILHPPIDD
PQSGELPQERWNPTQNVRTILLSVISMLNEPNTFSPANVDASVMYRKLVV
SKGKDKAYEDMVKKQVAASREAASKEGIVIPASIEEYCIXSCCESRSRFK
RRDRHPCLHRRILHQTQADRITIVGYEH
Run BLAST on NCBI

transcript from alignment at sc0000045:201858..207648+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004486 ID=TCONS_00004486|Name=TCONS_00004486|organism=Clytia hemisphaerica|type=transcript|length=5791bp|location=Sequence derived from alignment at sc0000045:201858..207648+ (Clytia hemisphaerica)
caagattatttgaaaatgcATTCCTGACTTTTGCATTCGCTTTGACTATT
GTTAATGTTTTATGCTTCACGATGTTTGGTTTATTTTGTGATTGTGACTT
TTAAATGATGACGATAAACACAAGGAAAAATTATTCATTCTTCGTGTTTA
GCTCGGGCTGGAGCTCTTTGATCATTAGTGCCTCAATGATTAAGATGTCA
TCGATTGATAGATTGCGTTCTTGTAAGTGTTTTCCCACTTGGCCCCAACT
CCCACTCCCtgaatttaaatttgatttctttattttcccaTTTTATAGca
taaaaaaacagaaaagaatTAAACAGATCATCAGTGTTAAATACAATAAA
CGCAAAAGAGAAGGCCTTGTGAAAGAAAATCCTACTACTATCTGTTAGCC
TTTCTTTGGTGACTTGGCCATTTGGACATTCAAAGCTATCACCAAGTGCA
AGTCACTGACAAGGAAGCAACATAATATCATCCCATCTCCGAtttaaaga
aaatccatttcaaaaattcttgaaCAATTTCAAAGAATAAACAAGTAACA
GTGACAAACAAAGAAACTACCCTGTAAAGAATCCAATCCGAAAATTTTGT
CCATTCTTGTGAAACTTTGGCTCAGTTTTTGTTTAATATTCGAACAAAAA
CAGATACAAATAAACCATGGCATCAAACGCAGCAGTGAAAGCCTTACAAC
TGGAAATGAAAAACATTACTAAAGATCCTGTTGAAGGAGTCTTGATCGAA
TTACAAGACGAAAACAACCTTTTCGAATGGAGTGTAGGCGTTTTTGGACC
GCCCAAAACGTTGTATGAGGGCGGTTATTTCAAGGTAACTATTTTTTCTG
TTGGTTAGACTTTAAtataaagggataatcagattttttcagatatATGG
CATCTTTAATTCTGATCGAAAGCTTCAAATATTCTTACCTACCtgttttc
caaagtcgagatatccGAGTCACAAGTTCTTGACTTTtagtatgaaaaaa
aatcagaattcCAACGTTTCGATAAGAATGGTCTCTAAGctgattttaga
aaatttgaaataatgaTTTATACAACATCGCTTTATGGAAATTAGTTAAG
CCGTGGTTACACTAcattaatatctttaaaaattttgagattttttaatc
aaaaatacattaaagaaattaactattttcttttaagtctttttgaaatt
tttgtatgttttatCAAATCTGCAATAGTTTTTTCTCAACTCATTTTCTC
ACTCAACCAACGACATGAGTGTAAGGAGGAAGGCAGCAGCACGTATTGTG
CTAATtcttttgaaatggaaatttgagaggaaatattcgaaaaagaaaag
tcgAGCTAAAAGGTCTTGCTGGGCACGCCTAGTGGTTAAAGCTGAGGAAC
GAAAAAAGTGCCTACAACAACATATTTGCTGAACTTGTCTACGTGACCAA
GAAGTATTTAGATCTTATTTAgaacccgggggggtactagggcaagatgg
gttacggggatgctccgctggtcagagtaccttttttaacctccacgagt
cccaggtagtgtcgcaaaaacaccaaaatagaaaaatcagtccctcgtag
ggtgcctatttttttgaaaaatttgtggaaaaagtagaaaattttagaaa
attttggaatttcagtcccattcagggtcactttttcacaaatttcgagt
ctcacgtagggtccatttttcgaacctcagcggagcaccccgtcggtcga
caagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTACAGAACTATC
ATGTCGGTGGCTTTGATCTCGagagaagtgaagaaaaaaactttaaactc
tttaccaaaaaaatggtaaagaattgcaagaaatattttctttttcaaga
atttatacgtcttaattttttaatcataaagacttgattaaaaaatttca
gaaatttagaAGTAAATTAATGTAATGTAAGTAACCACGCCTTAATTGAA
GGTTTTACTCTGGTCAACAGTGGGTTTCTGcatgccaaatatctcaaacc
atctgattatccctttataCGCATCGAGGTTTTCTTGAATCTAATTTGTG
GATTAGGTATGAAGTAAAGACCCCTCTGGAAATAATTCTTACTCCTGGGT
CACGTCACCTCtgcatttttgtagttttttatCCTCATAGATATccactt
tagaaaaaaaatgttctcattgttgaattttttttctggaagagcccaat
agcAATGTCTTCCTTCAAATTGATTTGAATTTAGTTTAAGGATTGTTGTC
TTTGGATGATATGCTAAAGTCGAGGGGGAGGGGACTTTAAAACTTGTATA
TCGTGCACCAGATGTTTATAAAAATCGAAGTGAAGAGTTGTTTGGATAAA
AATTCATTACCTTTTATACTATTTCAGGCAAAGATCAATTTCCCTCAAGA
TTATCCGTACTCTCCACCCACTTTCAAATTCTTGACTAAAATGTGGCATC
CCAATATTTATGAGGTAAGTAGCCTTGAGTTAAACTggttaaaaatgaga
aaatgattAAAAGCTTGATCTGAAAATTCAAGTAATATTTTAAGGACTGC
TTATTATGTTAATAGCGtgtttaaatttgattttcatcgtTAGACATAAT
tacttcaaaaagattttttcatgatCATGACACTTTTTTGTAATGAGTCA
AGATACCAAGCCTCTCACGACTTTTTTTTAACCTTAGTTTATTTTATAAT
ACCTCACGCTTTGGGAGTTTTCTaagtacagtagagtctccataattcga
aaatGCACGGGGAACGCAAATTTATTCGATGTATGAAAATTTCGGGTTAC
AGAAAcaagtttataaggcattgttaaccaAATTCCTTAACGTTATCTTT
TCGCTAACAACAGTCAGGTGATGTTTGCATTTCCATCTTGCATCCACCAA
TAGACGACCCACAGAGTGGCGAGCTTCCTCAGGAACGATGGAACCCTACT
CAAAACGTCAGGTATGTTTAATGACTGTCTTGTCGAAGTTCTTTGTTAAA
AAGAGAAGAATTCTCTGCTGGTTGGCTCACAGTACTACTTACCTTTTTTA
AAGTACATAACAAATGATTGGTACTTGCCAAATATATTTAGGGTAAAGTA
TTTGGAAACAATGCAATTttaacttaaaggttttgtttttacataagtgt
ttctgtttcatgtcagacacatatttcatatcaggacagtgtcttgcaat
tgttatattatgctgatatgaGCTAAAAAAAATGTTGTATTTTCCTATTt
ccgaccaatcttgctccacatccgtgtcaatccaatgtgaaaagcttgtg
aattaaaattgatgagtacgCAAACGATagcactcttatttaaaaaataa
acctTTAAAGACTTCAATCATAAAACTAGAAGACTAACCTGTAACAGTTG
CCCATCTTCTGTAGCAGAAGTTTTCATGCTTAATACTTAAATGGTAGAAA
CTTTCGTAGCGATTAAAGTTCGTTGCTGAGCTCATccgaaaaaaattatg
atttctATGGGATTTAAGTTCGTGGATGACACTATTTGGGCGCTTTTGAT
GCCAGTAAATATTTTGAGAGTCGTCACTGGCTAtgttgacattttttgaa
attatttttgcaaaatatttcatcgaTAAGAtcaatttttcataagaacc
aaatTTTGTAAATGACACTAAAATGTACGAAATTTGCTTTTTATCTCCCA
AAAGTTTTATCCCTTCAAGTTATCTCTAGATTAAATTTCCCTTTACTCCC
TCAGAACCATTTTATTATCTGTCATCTCGATGTTGAACGAGCCGAATACC
TTTTCGCCTGCCAACGTCGACGCGTCCGTCATGTATCGAAAGTTGGTCGT
CAGCAAGGGCAAAGACAAAGCTTATGAGGATATGGTCAAGTAAGTCTCCT
TCCTACACTGTTTTTAAACTTCTCAAGTCTCGATAGAAATAATGTTTTTC
CGTCATGAAATTTGAAGAATACGAGCTACATTTGaatctcgctaattcga
aatcGAACTGGGAATCTTATTTGTCCGAATCATGGAGACTTTCGAATTAA
TGAgagtattttaagagggtttctccctGACAGGAACTGAGAATAAGTTC
GAAtcatagaaagatttgaataatagaagttcgaattagcgaaaaagcga
gagtctactgtatttTATTTTGTGAAATCTTTCCCTTAGAACCAAATTTT
GCTTTGACAATGCTAAACAGTCTCTTTATACACGTTACAGTCTGAAAagc
attcaattttttttggttcgAAATCTTTCTTAAAGTTGAGATATTTGACG
TTgaatctttttactttttaagaaAACAAGTTGCCGCGAGTCGTGAAGCT
GCTTCAAAAGAAGGGATCGTCATCCCTGCTTCTATCGAAGAATACTGCAT
TNCAAGTTGCTGCGAGTCGCGAAGCCGCTTCAAAAGAAGGGATCGTCATC
CCTGCCTCCATCGAAGAATACTGCATCAAACACAAGCCGATCGGATCACA
ATCGTCGGATACGAACATTGATCTTTGCGACGATTGGTACGACGATTATG
ACGTCGATGATGATTATGACGAAGAAGATGATGACTACGAGTGTTTTGAC
GACAATGATGACTCGGGAACTGCCGACGATTGATTGGTTCAAATATTCGG
CGACCCGATGAAAAACGACAATTTTTTCGCGCCTTTTCGACGTCAACACA
CTGGTCGTTTAGAAGTCAGGATGTTTGGTGTGACGAGTGTTATCGAACGA
TTTGTCGGCTTTTTTCTTCGTCGAGATAATGGTGGGATAGCAAATTGTCG
TTTTTCGAAGAGTCGTTTGCCTGTGATGaagttaaaaaagtttaaaaatg
ataGAGGAGAGGAGATTAAAGTCTTGAAAGAGAAGATTCTTTCACGTTGA
CAGTTCTCAGTTAACCTGAATCCctctgaaatgatggaatcagggGGTGA
TGAGTGGAAACGCAATAAATTAACATTCAGGTAAATTGGTTCCTTGATGT
TTGtgtatgattgttttttttcaggttgACTTATAAAGTTN

Coding sequence (CDS) from alignment at sc0000045:201858..207648+

>TCONS_00004486 ID=TCONS_00004486|Name=TCONS_00004486|organism=Clytia hemisphaerica|type=CDS|length=3435bp|location=Sequence derived from alignment at sc0000045:201858..207648+ (Clytia hemisphaerica)
ATGGCATCAAACGCAGCAGTGAAAGCCTTACAACTGGAAATGAAAAACAT
TACTAAAGATCCTGTTGAAGGAGTCTTGATCGAATTACAAGACGAAAACA
ACCTTTTCGAATGGAGTGTAGGCGTTTTTGGACCGCCCAAAACGTTGTAT
GAGGGCGGTTATTTCAAGGCAAAGATCAATTTCCCTCAAGATTATCCGTA
CTCTCCACCCACTTTCAAATTCTTGACTAAAATGTGGCATCCCAATATTT
ATGAGTCAGGTGATGTTTGCATTTCCATCTTGCATCCACCAATAGACGAC
CCACAGAGTGGCGAGCTTCCTCAGGAACGATGGAACCCTACTCAAAACGT
CAGAACCATTTTATTATCTGTCATCTCGATGTTGAACGAGCCGAATACCT
TTTCGCCTGCCAACGTCGACGCGTCCGTCATGTATCGAAAGTTGGTCGTC
AGCAAGGGCAAAGACAAAGCTTATGAGGATATGGTCAAaaAACAAGTTGC
CGCGAGTCGTGAAGCTGCTTCAAAAGAAGGGATCGTCATCCCTGCTTCTA
TCGAAGAATACTGCATTNCAAGTTGCTGCGAGTCGCGAAGCCGCTTCAAA
AGAAGGGATCGTCATCCCTGCCTCCATCGAAGAATACTGCATCAAACACA
AGCCGATCGGATCACAATCGTCGGATACGAACATTGAATGGCATCAAACG
CAGCAGTGAAAGCCTTACAACTGGAAATGAAAAACATTACTAAAGATCCT
GTTGAAGGAGTCTTGATCGAATTACAAGACGAAAACAACCTTTTCGAATG
GAGTGTAGGCGTTTTTGGACCGCCCAAAACGTTGTATGAGGGCGGTTATT
TCAAGGCAAAGATCAATTTCCCTCAAGATTATCCGTACTCTCCACCCACT
TTCAAATTCTTGACTAAAATGTGGCATCCCAATATTTATGAGTCAGGTGA
TGTTTGCATTTCCATCTTGCATCCACCAATAGACGACCCACAGAGTGGCG
AGCTTCCTCAGGAACGATGGAACCCTACTCAAAACGTCAGAACCATTTTA
TTATCTGTCATCTCGATGTTGAACGAGCCGAATACCTTTTCGCCTGCCAA
CGTCGACGCGTCCGTCATGTATCGAAAGTTGGTCGTCAGCAAGGGCAAAG
ACAAAGCTTATGAGGATATGGTCAAaaAACAAGTTGCCGCGAGTCGTGAA
GCTGCTTCAAAAGAAGGGATCGTCATCCCTGCTTCTATCGAAGAATACTG
CATTNCAAGTTGCTGCGAGTCGCGAAGCCGCTTCAAAAGAAGGGATCGTC
ATCCCTGCCTCCATCGAAGAATACTGCATCAAACACAAGCCGATCGGATC
ACAATCGTCGGATACGAACATTGAATGGCATCAAACGCAGCAGTGAAAGC
CTTACAACTGGAAATGAAAAACATTACTAAAGATCCTGTTGAAGGAGTCT
TGATCGAATTACAAGACGAAAACAACCTTTTCGAATGGAGTGTAGGCGTT
TTTGGACCGCCCAAAACGTTGTATGAGGGCGGTTATTTCAAGGCAAAGAT
CAATTTCCCTCAAGATTATCCGTACTCTCCACCCACTTTCAAATTCTTGA
CTAAAATGTGGCATCCCAATATTTATGAGTCAGGTGATGTTTGCATTTCC
ATCTTGCATCCACCAATAGACGACCCACAGAGTGGCGAGCTTCCTCAGGA
ACGATGGAACCCTACTCAAAACGTCAGAACCATTTTATTATCTGTCATCT
CGATGTTGAACGAGCCGAATACCTTTTCGCCTGCCAACGTCGACGCGTCC
GTCATGTATCGAAAGTTGGTCGTCAGCAAGGGCAAAGACAAAGCTTATGA
GGATATGGTCAAaaAACAAGTTGCCGCGAGTCGTGAAGCTGCTTCAAAAG
AAGGGATCGTCATCCCTGCTTCTATCGAAGAATACTGCATTNCAAGTTGC
TGCGAGTCGCGAAGCCGCTTCAAAAGAAGGGATCGTCATCCCTGCCTCCA
TCGAAGAATACTGCATCAAACACAAGCCGATCGGATCACAATCGTCGGAT
ACGAACATTGAATGGCATCAAACGCAGCAGTGAAAGCCTTACAACTGGAA
ATGAAAAACATTACTAAAGATCCTGTTGAAGGAGTCTTGATCGAATTACA
AGACGAAAACAACCTTTTCGAATGGAGTGTAGGCGTTTTTGGACCGCCCA
AAACGTTGTATGAGGGCGGTTATTTCAAGGCAAAGATCAATTTCCCTCAA
GATTATCCGTACTCTCCACCCACTTTCAAATTCTTGACTAAAATGTGGCA
TCCCAATATTTATGAGTCAGGTGATGTTTGCATTTCCATCTTGCATCCAC
CAATAGACGACCCACAGAGTGGCGAGCTTCCTCAGGAACGATGGAACCCT
ACTCAAAACGTCAGAACCATTTTATTATCTGTCATCTCGATGTTGAACGA
GCCGAATACCTTTTCGCCTGCCAACGTCGACGCGTCCGTCATGTATCGAA
AGTTGGTCGTCAGCAAGGGCAAAGACAAAGCTTATGAGGATATGGTCAAa
aAACAAGTTGCCGCGAGTCGTGAAGCTGCTTCAAAAGAAGGGATCGTCAT
CCCTGCTTCTATCGAAGAATACTGCATTNCAAGTTGCTGCGAGTCGCGAA
GCCGCTTCAAAAGAAGGGATCGTCATCCCTGCCTCCATCGAAGAATACTG
CATCAAACACAAGCCGATCGGATCACAATCGTCGGATACGAACATTGAAT
GGCATCAAACGCAGCAGTGAAAGCCTTACAACTGGAAATGAAAAACATTA
CTAAAGATCCTGTTGAAGGAGTCTTGATCGAATTACAAGACGAAAACAAC
CTTTTCGAATGGAGTGTAGGCGTTTTTGGACCGCCCAAAACGTTGTATGA
GGGCGGTTATTTCAAGGCAAAGATCAATTTCCCTCAAGATTATCCGTACT
CTCCACCCACTTTCAAATTCTTGACTAAAATGTGGCATCCCAATATTTAT
GAGTCAGGTGATGTTTGCATTTCCATCTTGCATCCACCAATAGACGACCC
ACAGAGTGGCGAGCTTCCTCAGGAACGATGGAACCCTACTCAAAACGTCA
GAACCATTTTATTATCTGTCATCTCGATGTTGAACGAGCCGAATACCTTT
TCGCCTGCCAACGTCGACGCGTCCGTCATGTATCGAAAGTTGGTCGTCAG
CAAGGGCAAAGACAAAGCTTATGAGGATATGGTCAAaaAACAAGTTGCCG
CGAGTCGTGAAGCTGCTTCAAAAGAAGGGATCGTCATCCCTGCTTCTATC
GAAGAATACTGCATTNCAAGTTGCTGCGAGTCGCGAAGCCGCTTCAAAAG
AAGGGATCGTCATCCCTGCCTCCATCGAAGAATACTGCATCAAACACAAG
CCGATCGGATCACAATCGTCGGATACGAACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002527XLOC_002527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004486-exon-sc0000045-1491911889:201858..202691TCONS_00004486-exon-sc0000045-1491911889:201858..202691Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1510915933:201858..202691TCONS_00004486-exon-sc0000045-1510915933:201858..202691Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1575043694:201858..202691TCONS_00004486-exon-sc0000045-1575043694:201858..202691Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1491911889:204985..205071TCONS_00004486-exon-sc0000045-1491911889:204985..205071Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1510915933:204985..205071TCONS_00004486-exon-sc0000045-1510915933:204985..205071Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1575043694:204985..205071TCONS_00004486-exon-sc0000045-1575043694:204985..205071Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1491911889:205471..205568TCONS_00004486-exon-sc0000045-1491911889:205471..205568Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1510915933:205471..205568TCONS_00004486-exon-sc0000045-1510915933:205471..205568Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1575043694:205471..205568TCONS_00004486-exon-sc0000045-1575043694:205471..205568Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1491911889:206362..206496TCONS_00004486-exon-sc0000045-1491911889:206362..206496Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1510915933:206362..206496TCONS_00004486-exon-sc0000045-1510915933:206362..206496Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1575043694:206362..206496TCONS_00004486-exon-sc0000045-1575043694:206362..206496Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1491911889:206930..207648TCONS_00004486-exon-sc0000045-1491911889:206930..207648Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1510915933:206930..207648TCONS_00004486-exon-sc0000045-1510915933:206930..207648Clytia hemisphaericaexon
TCONS_00004486-exon-sc0000045-1575043694:206930..207648TCONS_00004486-exon-sc0000045-1575043694:206930..207648Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004486-proteinTCONS_00004486-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:201858..207648 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7966	13.0776	10.0907	9.14004	120.386	92.9946	120.198	130.183	76.6994	77.0007	44.152	64.7214	23.6235	23.2226	23.838	21.1644	24.8404	25.0997	20.8966	27.7248	21.9747	21.447	19.679	24.2252	37.4957	39.2865	21.8385	19.2194	21.0376	22.3984
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
IPR023313UBQ-conjugating_AS
Blast
[Close]
BLAST of TCONS_00004486 vs. Swiss-Prot (Human)
Match: UB2R2 (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 5.962e-94
Identity = 131/187 (70.05%), Postives = 160/187 (85.56%), Query Frame = 1 
Query:  679 AAVKALQLEMKNITKDPVEGVLIELQDENNLFEWSVGVFGPPKTLYEGGYFKAKINFPQDYPYSPPTFKFLTKMWHPNIYESGDVCISILHPPIDDPQSGELPQERWNPTQNVRTILLSVISMLNEPNTFSPANVDASVMYRKLVVSKGKDKAYEDMVKKQVAASREAASKEGIVIPASIEEYCIXS 1239
            ++ KAL LE+K++ ++PVEG  I L DE++L+ W V +FGPP TLYEGGYFKA I FP DYPYSPPTF+FLTKMWHPNIYE+GDVCISILHPP+DDPQSGELP ERWNPTQNVRTILLSVIS+LNEPNTFSPANVDASVM+RK   SKGKDK Y ++++KQV+A++  A K+G+ +P ++ EYCI +
Sbjct:    8 SSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKT 194
The following BLAST results are available for this feature:
BLAST of TCONS_00004486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2R25.962e-9470.05Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
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