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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004481 ID=TCONS_00004481|Name=TCONS_00004481|organism=Clytia hemisphaerica|type=transcript|length=1807bp
CATATAAACCCTGATTAAATTTATAGCCAAAAATATGCGGAGAAATAAAA
AGGTTTTGCTTTTCTATGGATTACTTGTATCAACGATCGTCCTTTATCTG
TTCCGAGGAGGCGATACCACGACTGAAGCTGCAACAACAAATGTATGCCA
GAGGCAGGAGAATATAGTATTCTTGAAGACGCACAAGACTGGTAGTAGTA
CGTTGGCGAACATCCTTAACAGATTTGCAGAGATGAATAATTTGAGGGTG
TTATTACCCCTAAAGGGATTGAATCGGTTTCAATGGCCCAACATTTTCTC
AGAACGATCAGTTGAAATGAGTTATTTCCAATATAGAAGCGATACCAAGG
CAAACCTGTTGATCAATCATGCAAGGTTGAACAAATCAAGGatgagtaat
ttttttccaaaagatgtCAAGTTCATTACAATCATACGCAATCCAATCAC
TAATGTCGAAAGTGTTTACAATTATGAGGAGATGGGTCAAACATTCCAAA
AATATGAGCATCgaaaatcaaaagttgaatttaaagAATTCTTCGAGTCA
CCaatgaaatttcaacaaaaagcaataaaaaaaaatgacaagataGTACC
CTTGCTCCACAATGGAATGCTTTTCGATTtgggaaaaccgttttttagtc
AGATGGAATACGAAGATACTttaattcaacaaaaaatacaggAGCTAGAA
AATGAAATGGATATGTTCCTAATTATGGAGCATTTTGACGAAAGTCTAAT
CCTAATGAAGCGTCTTTTTTGTTGGACTTTTGAAGATATCTTGTATATTA
AACATAATCAAAGACACAAAGTTAAAGCTAAAATGGATCCTAAGCTCAAG
GAGACTATTACAAAATGGAATAGAGCAGACTTGCTCCTTTACCAACATTT
TAACAAAACGTTATGGAGAAAGATTGCCGAGTATGGAAAATCCTTTCATG
ATGATCTAAAAATCTTTAGAAATAAATTAGACCAATTTAAAGATGCTTGT
GATGTTAAGGAGACAAAAGGAGGAGCACATGACCATAAGGACACTGCAAT
CATTAAACATAAACCTGGAGAAAACGTTAATACTGTCCTTGTTTCTGTTT
GTGAGATGGTGTTCCGCTCGGAAACTAATTATATTAACTGGTTTCGTCGA
CTTTACAGTCAGGAAATCCAAGAAATTCGACAAGCTATTTTCCGTAAGAT
GGCTAAAGCTAGAGCTGAgcttgaaagaaaaaaacaaaaacacaatggct
aggtaaaaaaataaaaagtgacAAAAGAGCAGAACTGGACCACAATGCTG
ATTTATTCATCTAACTATACGAAGATGTTATGATGAAGGTTTGGTGCACC
AGGGATAGACTTTCAACATATTACATGCCAGCCCGTAGGGAGTACATATT
CATAATTAAACGGCTGGAAAAACGGAGGTTAAAATATTTAGACTAAAATC
AAATACAGTTAGCtcactctaattcgaacttctattcaTCGAATCTTTCT
GTGATTCGAATAATATCTTTGTTtccatgaagatcgaattacAGCGAATC
AACTGTATGTATGGAACTGGCGAGATAAAAGCACCGCAGGGGAAAGTCTT
TACCAGTTCTTTTAGCTATGAATATGAGATATACAATGTCACTGAATTTT
CTTTTGCAAATAAGAGAGCACAAAgtaatttttagaatattttagaTAGA
TAGGTTGATGTTTTTTCTACTcatattcattttcttttagtttaagttta
agcttgtaaaatttttctttcctttttcttttcataaagTGCTCTGAACT
ATTTTTC Run BLAST on NCBI transcript from alignment at sc0000045:149191..155070+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004481 ID=TCONS_00004481|Name=TCONS_00004481|organism=Clytia hemisphaerica|type=transcript|length=5880bp|location=Sequence derived from alignment at sc0000045:149191..155070+ (Clytia hemisphaerica)
CATATAAACCCTGATTAAATTTATAGCCAAAAATATGCGGAGAAATAAAA
AGGTTTTGCTTTTCTATGGATTACTTGTATCAACGATCGTCCTTTATCTG
TTCCGAGGAGGTAAAAAATATCTGATTTTGTACAGTCCACAACATATGGT
TAATCCTAACATATGTAATATGCATCTCTGGTTTTAAGTAgtggactctc
gctaattcgaacttctaatATTCAAATCTCTCTATGATTCGAACTTATTC
TCAGTTCCTGTCagggagaaaccctcttaaaatactctctttaattcaaa
tctctctgtTATTCAAAAAAATAGGATTCCCaattcgagttcgaattaac
AGTAGTTAACTGTTTCAGCTAGCACGCAACGTTGtctcaacgtttatcta
acgttcacaacgtccatataacgttaaatgaacgttaaaacaacgttgtg
tgccagttgggagGATCTTCTTTCTATAACGGTCTATCTGAAGGTCGCGA
ACCATTTCTTCACTTACTCTTGACTCTGCTGGCAGTAAGTAGAGAGGCAT
CAAATTTTATTTGTGATCTTTGATAAGACTCACAATCTTTGTTAAGACTC
ACAACCTTGTGCCGTAGCCGGATGTTCAATCTTTATTCTACGGTCACCGC
TGCATAATTACATTCGGTTAAatatttgaatgattttttgcTAGTTTGCG
AATTTTTACTCGTTATAATATCGACGAATTCTATTTAGGAATCCTCGTAT
CTAAGGAAAATTGACTAATGGTTCTTTATTTGATTCTTTTCTAGGCGATA
CCACGACTGAAGCTGCAACAACAAATGTGTTAGTTATTACTTTAATagtt
ccaatagtttccaaaaACATTCTCTCCGtttgaaatgaataaaaattagC
GTAGGTCTATCTCGTGTAAATTCAACTACAAAGACATTAATTAAtgtttg
aatttaatgataaTGCTAATTTATTAATATATTAGAAATACCATCATCAA
GTTTGATACAGGCTAAACGGCAAATCTctcattcattgaagtcaccgAAC
TCGTCCCCAGTTTCTTATTCCACTTTTTACTTCTGAAAGCCCCTACAATA
CGACCATATCACGTCCATCAAGTATGATAAAACGAAGCGTGGTTGGATCA
GGATAAGAGAGTGAGAGGTCAACCCTCCAACCTTAGTTTTTTCTCCAGCC
TAAGTACATGGGAACCTGAAATTAGCGGACAGGCTAGTATTGGCTAGTTA
GAGATGTCCGCGTTTTAGAATGTTCAATTATTTATTACATTAAAtgcttt
tttcttataagaatggtgtaaattcatttcatcatgaatattcttaactt
ttttgcgGAAATCATccaaatattcttacagcattcttaggttaggatcc
taattcagactaaatttaacatttagtacatacgtctcaaggaTAGAATG
GCATTCTTGTGAAAAGAgcgagccttacttgggggtaattggcaatctAT
AATTGAAtatgctctaaaaatggtattcttagcttgagtagccaaattcc
atgatggtgatattcttagaaTTATTCTTCATTTATTGGCCATTTtcatc
gtggacattcttataaagtgtattcttataaaaaaacgtgtattggatTA
TCATATCTATGATCTTTCGTCTTTTTAGATGCCAGAGGCAGGAGAATATA
GTATTCTTGAAGACGCACAAGACTGGTAGTAGTACGTTGGCGAACATCCT
TAACAGATTTGCAGAGATGAATAATTTGAGGGTGTTATTACCCCTAAAGG
GATTGAATCGGTTTCAATGGCCCAACATTTTCTCAGAACGATCAGTTGAA
ATGAGTTATTTCCAATATAGAAGCGATACCAAGGCAAACCTGTTGATCAA
TCATGCAAGGTCTGTGTTTTTTTGTTGTAGAATATCTGGCTGTGATAATT
AGAGGAAAAACGGTACTGTTTTGCATTTCCCTGGGGAAGGGGGTGGTGCC
GAATAAGCCAAAAGGGTTCCATTTTCGCACCCTTGAAAGTAACTTAGAGG
GATACCCAAACAAATTATTTATTACACATTGTTATGTATAATTTAGCCAT
TTAGTCTCTGCAAAGGTTCTAAAAAATTTCTAGATAATTATGTCACATGT
TGTTGGAGGCATtaagtttcaagcccgaagggctagagacgAGACTCCCc
tttttatttcccatccagaacgcctgcgcgtagtttttacacaaaagccg
gattgaaactaaaatttatcactagatttcaaaaaatgtaggaACCACTA
Cagtagatacaatccgtcgtcatgattacggcgcgttctggatgggaaat
acgaagcttcaatttctcttgcctgagaagatttaaagttcggctctagc
tcttcgggcttgaaactcaatggttagaGGTCAGGTCCACACAGAGAACT
GACACATTACCCTGCAAGCCTAGCGCCCTTTCAAACACAAGCATTATTTG
AGTTCAAATGAATCGTAGTAACTAAAAGGTGAAACGTCagagaaacgggt
ggaaacgggtggaaacgatacagaaacgggtggaaacgaaatgaaaacgg
gtggaaacgatacggaaacgggtggaaacgacacggaaacgggtggaaac
gacacggaaacgggtggaaacgacacggaaacgggtggaaacgacacGGA
AATTtatgtaacgctagcccagcatTAAGATACATCTCCGTTTTATCACA
GGCTCCGCATAACCATaaaagtcgttgcagtgcaaatctttcgcaaattt
aaaaacccactttcccgtggaaataattgatgttttttgttttttttgga
acccttggggcataagctacccgttgaccacaaaaattccaaaactcttg
aattgaccgttgacaacattagaacgggacccaatgacgtcacaagttTG
GGAataacttcaaaatgcgatatctcgagtttgaaaaggagttgggaggt
cgttgacccctcattggatcgagaattttaatGGAAAATAAGTTAGGAgg
ggtaagagtgggtatataGAGACTTTCGAAATTAAACATATTCAAATTGA
GGCATCTtaggtccgatgacgtcatcaaaaactgaaaaatgcaatatctg
gagtttgagaaggatttaagcaatgattgacccctcatgggatcggaaat
catcatgAGCATATATTTGGTCAATGAAGAAATAGTTACAGTagagtgaa
aagtttattacacATTCGATGACATCATTTAGAGCCCAAATGACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTTTCCCTGTCGTTTC
TCCCCGTTTCCAGGGCGATTCCCCCCGTTTCCatatcgtttccacccgtt
tctctGACGTTTCACGTTTTAGTTATTACGCAAATCAATGGTTGAAGTAA
ATTcaagaaatttatttatttgattattttcagcagggacaaaagttgga
aaataattttcttttaaggacgatattttggccaattttttctaCTGGGG
TTTGTGTTATtggattaaaacaaaaatttgaaaattcatgtaacaatttt
catttctttcgaAGTTTTTCGGTGTTCATACCATCATTAGGTTcataaga
attttcaaatttttgttttaatccaATATGACATAGCACATTTTAACACA
AGAAATCTGTGTGCATTATTAAAtaagttttccaatttttcaatcCAGGT
TGAACAAATCAAGGatgagtaatttttttccaaaagatgtCAAGTTCATT
ACAATCATACGCAATCCAATCACTAATGTCGAAAGTGTTTACAATTATGA
GGAGATGGGTCAAACATTCCAAAAATATGAGCATCgaaaatcaaaagttg
aatttaaagAATTCTTCGAGTCACCaatgaaatttcaacaaaaagcaata
aaaaaaaatgacaagataGTACCCTTGCTCCACAATGGAATGCTTTTCGA
TTtgggaaaaccgttttttagtcAGATGGAATACGAAGATACTttaattc
aacaaaaaatacaggAGCTAGAAAATGAAATGGATATGTTCCTAATTATG
GAGCATTTTGACGAAAGTCTAATCCTAATGAAGCGTCTTTTTTGTTGGAC
TTTTGAAGATATCTTGTATATTAAACATAATCAAAGACACAAAGTTAAAG
CTAAAATGGATCCTAAGCTCAAGGAGACTATTACAAAATGGAATAGAGCA
GACTTGCTCCTTTACCAACATTTTAACAAAACGTTATGGAGAAAGATTGC
CGAGTATGGAAAATCCTTTCATGATGATCTAAAAATCTTTAGAAATAAAT
TAGACCAATTTAAAGATGCTTGTGATGTTAAGGAGACAAAAGGAGGAGCA
CATGACCATAAGGACACTGCAATCATTAAACATAAACCTGGAGAAAACGT
TAATACTGTCCTTGTTTCTGTTTGTGAGATGGTGTTCCGCTCGGAAACTA
ATTATATTAACTGGTTTCGTCGACTTTACAGTCAGGAAATCCAAGAAATT
CGACAAGCTATTTTCCGTAAGATGGCTAAAGCTAGAGCTGAgcttgaaag
aaaaaaacaaaaacacaatggctaggtaaaaaaataaaaagtgacAAAAG
AGCAGAACTGGACCACAATGCTGATTTATTCATCTAACTATACGAAGATG
TTATGATGAAGGTTTGGTGCACCAGGGATAGACTTTCAACATATTACATG
CCAGCCCGTAGGGAGTACATATTCATAATTAAACGGCTGGAAAAACGGAG
GTTAAAATATTTAGACTAAAATCAAATACAGTTAGCtcactctaattcga
acttctattcaTCGAATCTTTCTGTGATTCGAATAATATCTTTGTTtcca
tgaagatcgaattacAGCGAATCAACTGTATGTATGGAACTGGCGAGATA
AAAGCACCGCAGGGGAAAGTCTTTACCAGTTCTTTTAGCTATGAATATGA
GATATACAATGTCACTGAATTTTCTTTTGCAAATAAGAGAGCACAAAgta
atttttagaatattttagaTAGATAGGTTGATGTTTTTTCTACTcatatt
cattttcttttagtttaagtttaagcttgtaaaatttttctttccttttt
cttttcataaagTGCTCTGAACTATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004481-exon-sc0000045-1491911889:149191..149300 | TCONS_00004481-exon-sc0000045-1491911889:149191..149300 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1510915933:149191..149300 | TCONS_00004481-exon-sc0000045-1510915933:149191..149300 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1575043694:149191..149300 | TCONS_00004481-exon-sc0000045-1575043694:149191..149300 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1491911889:149985..150018 | TCONS_00004481-exon-sc0000045-1491911889:149985..150018 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1510915933:149985..150018 | TCONS_00004481-exon-sc0000045-1510915933:149985..150018 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1575043694:149985..150018 | TCONS_00004481-exon-sc0000045-1575043694:149985..150018 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1491911889:150869..151099 | TCONS_00004481-exon-sc0000045-1491911889:150869..151099 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1510915933:150869..151099 | TCONS_00004481-exon-sc0000045-1510915933:150869..151099 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1575043694:150869..151099 | TCONS_00004481-exon-sc0000045-1575043694:150869..151099 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1491911889:153639..155070 | TCONS_00004481-exon-sc0000045-1491911889:153639..155070 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1510915933:153639..155070 | TCONS_00004481-exon-sc0000045-1510915933:153639..155070 | Clytia hemisphaerica | exon |
| TCONS_00004481-exon-sc0000045-1575043694:153639..155070 | TCONS_00004481-exon-sc0000045-1575043694:153639..155070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:149191..155070 + |
Blast
BLAST of TCONS_00004481 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.199e-42 Identity = 92/271 (33.95%), Postives = 137/271 (50.55%), Query Frame = 2
Query: 131 ATTNVCQRQENIVFLKTHKTGSSTLANILNRFAEMNNLRVLLPLKGLNRFQWPNIFSERSVEMSYFQYRSDTKANLLINHARLNKSRMSNFFPKDVKFITIIRNPITNVESVYNYEEMGQTFQKYEHRKSKVEFKEFFESPMKFQQKAIKKNDKIVPLLHNGMLFDLGKPFFSQMEYEDTLIQQKIQELENEMDMFLIMEHFDESLILMKRLFCWTFEDILYIKHNQRHKVK-AKMDPKLKETITKWNRADLLLYQHFNKTLWRKIAEYGK 940
+ CQ + NIVFLKTHKT SSTL NIL RF + + L+ P G N F +P F+ V+ YR N++ NH R + + P + FIT++R+P ES ++Y G + + EF + P ++ N L N + FDLG + + ++ +Q+ I E+E + L+ E+FDESL+L+K L CW ED+LY K N R ++ +L T WN D LY+HFN + WRK+ +G+
Sbjct: 67 GSAGECQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFP-NGRNDFDYPTFFARSLVQ----DYRPGACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHY--FGPVVPLTWKLSAGDKLTEFLQDPDRYYDP----NGFNAHYLRNLLFFDLG--YDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGR 324
The following BLAST results are available for this feature:
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