TCONS_00004481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004481
Unique NameTCONS_00004481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004481 ID=TCONS_00004481|Name=TCONS_00004481|organism=Clytia hemisphaerica|type=transcript|length=1807bp
CATATAAACCCTGATTAAATTTATAGCCAAAAATATGCGGAGAAATAAAA
AGGTTTTGCTTTTCTATGGATTACTTGTATCAACGATCGTCCTTTATCTG
TTCCGAGGAGGCGATACCACGACTGAAGCTGCAACAACAAATGTATGCCA
GAGGCAGGAGAATATAGTATTCTTGAAGACGCACAAGACTGGTAGTAGTA
CGTTGGCGAACATCCTTAACAGATTTGCAGAGATGAATAATTTGAGGGTG
TTATTACCCCTAAAGGGATTGAATCGGTTTCAATGGCCCAACATTTTCTC
AGAACGATCAGTTGAAATGAGTTATTTCCAATATAGAAGCGATACCAAGG
CAAACCTGTTGATCAATCATGCAAGGTTGAACAAATCAAGGatgagtaat
ttttttccaaaagatgtCAAGTTCATTACAATCATACGCAATCCAATCAC
TAATGTCGAAAGTGTTTACAATTATGAGGAGATGGGTCAAACATTCCAAA
AATATGAGCATCgaaaatcaaaagttgaatttaaagAATTCTTCGAGTCA
CCaatgaaatttcaacaaaaagcaataaaaaaaaatgacaagataGTACC
CTTGCTCCACAATGGAATGCTTTTCGATTtgggaaaaccgttttttagtc
AGATGGAATACGAAGATACTttaattcaacaaaaaatacaggAGCTAGAA
AATGAAATGGATATGTTCCTAATTATGGAGCATTTTGACGAAAGTCTAAT
CCTAATGAAGCGTCTTTTTTGTTGGACTTTTGAAGATATCTTGTATATTA
AACATAATCAAAGACACAAAGTTAAAGCTAAAATGGATCCTAAGCTCAAG
GAGACTATTACAAAATGGAATAGAGCAGACTTGCTCCTTTACCAACATTT
TAACAAAACGTTATGGAGAAAGATTGCCGAGTATGGAAAATCCTTTCATG
ATGATCTAAAAATCTTTAGAAATAAATTAGACCAATTTAAAGATGCTTGT
GATGTTAAGGAGACAAAAGGAGGAGCACATGACCATAAGGACACTGCAAT
CATTAAACATAAACCTGGAGAAAACGTTAATACTGTCCTTGTTTCTGTTT
GTGAGATGGTGTTCCGCTCGGAAACTAATTATATTAACTGGTTTCGTCGA
CTTTACAGTCAGGAAATCCAAGAAATTCGACAAGCTATTTTCCGTAAGAT
GGCTAAAGCTAGAGCTGAgcttgaaagaaaaaaacaaaaacacaatggct
aggtaaaaaaataaaaagtgacAAAAGAGCAGAACTGGACCACAATGCTG
ATTTATTCATCTAACTATACGAAGATGTTATGATGAAGGTTTGGTGCACC
AGGGATAGACTTTCAACATATTACATGCCAGCCCGTAGGGAGTACATATT
CATAATTAAACGGCTGGAAAAACGGAGGTTAAAATATTTAGACTAAAATC
AAATACAGTTAGCtcactctaattcgaacttctattcaTCGAATCTTTCT
GTGATTCGAATAATATCTTTGTTtccatgaagatcgaattacAGCGAATC
AACTGTATGTATGGAACTGGCGAGATAAAAGCACCGCAGGGGAAAGTCTT
TACCAGTTCTTTTAGCTATGAATATGAGATATACAATGTCACTGAATTTT
CTTTTGCAAATAAGAGAGCACAAAgtaatttttagaatattttagaTAGA
TAGGTTGATGTTTTTTCTACTcatattcattttcttttagtttaagttta
agcttgtaaaatttttctttcctttttcttttcataaagTGCTCTGAACT
ATTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000045:149191..155070+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004481 ID=TCONS_00004481|Name=TCONS_00004481|organism=Clytia hemisphaerica|type=transcript|length=5880bp|location=Sequence derived from alignment at sc0000045:149191..155070+ (Clytia hemisphaerica)
CATATAAACCCTGATTAAATTTATAGCCAAAAATATGCGGAGAAATAAAA AGGTTTTGCTTTTCTATGGATTACTTGTATCAACGATCGTCCTTTATCTG TTCCGAGGAGGTAAAAAATATCTGATTTTGTACAGTCCACAACATATGGT TAATCCTAACATATGTAATATGCATCTCTGGTTTTAAGTAgtggactctc gctaattcgaacttctaatATTCAAATCTCTCTATGATTCGAACTTATTC TCAGTTCCTGTCagggagaaaccctcttaaaatactctctttaattcaaa tctctctgtTATTCAAAAAAATAGGATTCCCaattcgagttcgaattaac AGTAGTTAACTGTTTCAGCTAGCACGCAACGTTGtctcaacgtttatcta acgttcacaacgtccatataacgttaaatgaacgttaaaacaacgttgtg tgccagttgggagGATCTTCTTTCTATAACGGTCTATCTGAAGGTCGCGA ACCATTTCTTCACTTACTCTTGACTCTGCTGGCAGTAAGTAGAGAGGCAT CAAATTTTATTTGTGATCTTTGATAAGACTCACAATCTTTGTTAAGACTC ACAACCTTGTGCCGTAGCCGGATGTTCAATCTTTATTCTACGGTCACCGC TGCATAATTACATTCGGTTAAatatttgaatgattttttgcTAGTTTGCG AATTTTTACTCGTTATAATATCGACGAATTCTATTTAGGAATCCTCGTAT CTAAGGAAAATTGACTAATGGTTCTTTATTTGATTCTTTTCTAGGCGATA CCACGACTGAAGCTGCAACAACAAATGTGTTAGTTATTACTTTAATagtt ccaatagtttccaaaaACATTCTCTCCGtttgaaatgaataaaaattagC GTAGGTCTATCTCGTGTAAATTCAACTACAAAGACATTAATTAAtgtttg aatttaatgataaTGCTAATTTATTAATATATTAGAAATACCATCATCAA GTTTGATACAGGCTAAACGGCAAATCTctcattcattgaagtcaccgAAC TCGTCCCCAGTTTCTTATTCCACTTTTTACTTCTGAAAGCCCCTACAATA CGACCATATCACGTCCATCAAGTATGATAAAACGAAGCGTGGTTGGATCA GGATAAGAGAGTGAGAGGTCAACCCTCCAACCTTAGTTTTTTCTCCAGCC TAAGTACATGGGAACCTGAAATTAGCGGACAGGCTAGTATTGGCTAGTTA GAGATGTCCGCGTTTTAGAATGTTCAATTATTTATTACATTAAAtgcttt tttcttataagaatggtgtaaattcatttcatcatgaatattcttaactt ttttgcgGAAATCATccaaatattcttacagcattcttaggttaggatcc taattcagactaaatttaacatttagtacatacgtctcaaggaTAGAATG GCATTCTTGTGAAAAGAgcgagccttacttgggggtaattggcaatctAT AATTGAAtatgctctaaaaatggtattcttagcttgagtagccaaattcc atgatggtgatattcttagaaTTATTCTTCATTTATTGGCCATTTtcatc gtggacattcttataaagtgtattcttataaaaaaacgtgtattggatTA TCATATCTATGATCTTTCGTCTTTTTAGATGCCAGAGGCAGGAGAATATA GTATTCTTGAAGACGCACAAGACTGGTAGTAGTACGTTGGCGAACATCCT TAACAGATTTGCAGAGATGAATAATTTGAGGGTGTTATTACCCCTAAAGG GATTGAATCGGTTTCAATGGCCCAACATTTTCTCAGAACGATCAGTTGAA ATGAGTTATTTCCAATATAGAAGCGATACCAAGGCAAACCTGTTGATCAA TCATGCAAGGTCTGTGTTTTTTTGTTGTAGAATATCTGGCTGTGATAATT AGAGGAAAAACGGTACTGTTTTGCATTTCCCTGGGGAAGGGGGTGGTGCC GAATAAGCCAAAAGGGTTCCATTTTCGCACCCTTGAAAGTAACTTAGAGG GATACCCAAACAAATTATTTATTACACATTGTTATGTATAATTTAGCCAT TTAGTCTCTGCAAAGGTTCTAAAAAATTTCTAGATAATTATGTCACATGT TGTTGGAGGCATtaagtttcaagcccgaagggctagagacgAGACTCCCc tttttatttcccatccagaacgcctgcgcgtagtttttacacaaaagccg gattgaaactaaaatttatcactagatttcaaaaaatgtaggaACCACTA Cagtagatacaatccgtcgtcatgattacggcgcgttctggatgggaaat acgaagcttcaatttctcttgcctgagaagatttaaagttcggctctagc tcttcgggcttgaaactcaatggttagaGGTCAGGTCCACACAGAGAACT GACACATTACCCTGCAAGCCTAGCGCCCTTTCAAACACAAGCATTATTTG AGTTCAAATGAATCGTAGTAACTAAAAGGTGAAACGTCagagaaacgggt ggaaacgggtggaaacgatacagaaacgggtggaaacgaaatgaaaacgg gtggaaacgatacggaaacgggtggaaacgacacggaaacgggtggaaac gacacggaaacgggtggaaacgacacggaaacgggtggaaacgacacGGA AATTtatgtaacgctagcccagcatTAAGATACATCTCCGTTTTATCACA GGCTCCGCATAACCATaaaagtcgttgcagtgcaaatctttcgcaaattt aaaaacccactttcccgtggaaataattgatgttttttgttttttttgga acccttggggcataagctacccgttgaccacaaaaattccaaaactcttg aattgaccgttgacaacattagaacgggacccaatgacgtcacaagttTG GGAataacttcaaaatgcgatatctcgagtttgaaaaggagttgggaggt cgttgacccctcattggatcgagaattttaatGGAAAATAAGTTAGGAgg ggtaagagtgggtatataGAGACTTTCGAAATTAAACATATTCAAATTGA GGCATCTtaggtccgatgacgtcatcaaaaactgaaaaatgcaatatctg gagtttgagaaggatttaagcaatgattgacccctcatgggatcggaaat catcatgAGCATATATTTGGTCAATGAAGAAATAGTTACAGTagagtgaa aagtttattacacATTCGATGACATCATTTAGAGCCCAAATGACNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTTTCCCTGTCGTTTC TCCCCGTTTCCAGGGCGATTCCCCCCGTTTCCatatcgtttccacccgtt tctctGACGTTTCACGTTTTAGTTATTACGCAAATCAATGGTTGAAGTAA ATTcaagaaatttatttatttgattattttcagcagggacaaaagttgga aaataattttcttttaaggacgatattttggccaattttttctaCTGGGG TTTGTGTTATtggattaaaacaaaaatttgaaaattcatgtaacaatttt catttctttcgaAGTTTTTCGGTGTTCATACCATCATTAGGTTcataaga attttcaaatttttgttttaatccaATATGACATAGCACATTTTAACACA AGAAATCTGTGTGCATTATTAAAtaagttttccaatttttcaatcCAGGT TGAACAAATCAAGGatgagtaatttttttccaaaagatgtCAAGTTCATT ACAATCATACGCAATCCAATCACTAATGTCGAAAGTGTTTACAATTATGA GGAGATGGGTCAAACATTCCAAAAATATGAGCATCgaaaatcaaaagttg aatttaaagAATTCTTCGAGTCACCaatgaaatttcaacaaaaagcaata aaaaaaaatgacaagataGTACCCTTGCTCCACAATGGAATGCTTTTCGA TTtgggaaaaccgttttttagtcAGATGGAATACGAAGATACTttaattc aacaaaaaatacaggAGCTAGAAAATGAAATGGATATGTTCCTAATTATG GAGCATTTTGACGAAAGTCTAATCCTAATGAAGCGTCTTTTTTGTTGGAC TTTTGAAGATATCTTGTATATTAAACATAATCAAAGACACAAAGTTAAAG CTAAAATGGATCCTAAGCTCAAGGAGACTATTACAAAATGGAATAGAGCA GACTTGCTCCTTTACCAACATTTTAACAAAACGTTATGGAGAAAGATTGC CGAGTATGGAAAATCCTTTCATGATGATCTAAAAATCTTTAGAAATAAAT TAGACCAATTTAAAGATGCTTGTGATGTTAAGGAGACAAAAGGAGGAGCA CATGACCATAAGGACACTGCAATCATTAAACATAAACCTGGAGAAAACGT TAATACTGTCCTTGTTTCTGTTTGTGAGATGGTGTTCCGCTCGGAAACTA ATTATATTAACTGGTTTCGTCGACTTTACAGTCAGGAAATCCAAGAAATT CGACAAGCTATTTTCCGTAAGATGGCTAAAGCTAGAGCTGAgcttgaaag aaaaaaacaaaaacacaatggctaggtaaaaaaataaaaagtgacAAAAG AGCAGAACTGGACCACAATGCTGATTTATTCATCTAACTATACGAAGATG TTATGATGAAGGTTTGGTGCACCAGGGATAGACTTTCAACATATTACATG CCAGCCCGTAGGGAGTACATATTCATAATTAAACGGCTGGAAAAACGGAG GTTAAAATATTTAGACTAAAATCAAATACAGTTAGCtcactctaattcga acttctattcaTCGAATCTTTCTGTGATTCGAATAATATCTTTGTTtcca tgaagatcgaattacAGCGAATCAACTGTATGTATGGAACTGGCGAGATA AAAGCACCGCAGGGGAAAGTCTTTACCAGTTCTTTTAGCTATGAATATGA GATATACAATGTCACTGAATTTTCTTTTGCAAATAAGAGAGCACAAAgta atttttagaatattttagaTAGATAGGTTGATGTTTTTTCTACTcatatt cattttcttttagtttaagtttaagcttgtaaaatttttctttccttttt cttttcataaagTGCTCTGAACTATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002522XLOC_002522Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004481-exon-sc0000045-1491911889:149191..149300TCONS_00004481-exon-sc0000045-1491911889:149191..149300Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1510915933:149191..149300TCONS_00004481-exon-sc0000045-1510915933:149191..149300Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1575043694:149191..149300TCONS_00004481-exon-sc0000045-1575043694:149191..149300Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1491911889:149985..150018TCONS_00004481-exon-sc0000045-1491911889:149985..150018Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1510915933:149985..150018TCONS_00004481-exon-sc0000045-1510915933:149985..150018Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1575043694:149985..150018TCONS_00004481-exon-sc0000045-1575043694:149985..150018Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1491911889:150869..151099TCONS_00004481-exon-sc0000045-1491911889:150869..151099Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1510915933:150869..151099TCONS_00004481-exon-sc0000045-1510915933:150869..151099Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1575043694:150869..151099TCONS_00004481-exon-sc0000045-1575043694:150869..151099Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1491911889:153639..155070TCONS_00004481-exon-sc0000045-1491911889:153639..155070Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1510915933:153639..155070TCONS_00004481-exon-sc0000045-1510915933:153639..155070Clytia hemisphaericaexon
TCONS_00004481-exon-sc0000045-1575043694:153639..155070TCONS_00004481-exon-sc0000045-1575043694:153639..155070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:149191..155070 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0126067 0 2.69614 1.11397 0 0 0 0 0.34617 0.653911 1.91251 1.38264 0.57591 0.805649 0 0
Blast
BLAST of TCONS_00004481 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.199e-42
Identity = 92/271 (33.95%), Postives = 137/271 (50.55%), Query Frame = 2
Query:  131 ATTNVCQRQENIVFLKTHKTGSSTLANILNRFAEMNNLRVLLPLKGLNRFQWPNIFSERSVEMSYFQYRSDTKANLLINHARLNKSRMSNFFPKDVKFITIIRNPITNVESVYNYEEMGQTFQKYEHRKSKVEFKEFFESPMKFQQKAIKKNDKIVPLLHNGMLFDLGKPFFSQMEYEDTLIQQKIQELENEMDMFLIMEHFDESLILMKRLFCWTFEDILYIKHNQRHKVK-AKMDPKLKETITKWNRADLLLYQHFNKTLWRKIAEYGK 940
             +   CQ + NIVFLKTHKT SSTL NIL RF + + L+   P  G N F +P  F+   V+     YR     N++ NH R +   +    P +  FIT++R+P    ES ++Y   G          +  +  EF + P ++       N      L N + FDLG  + + ++     +Q+ I E+E    + L+ E+FDESL+L+K L CW  ED+LY K N R      ++  +L    T WN  D  LY+HFN + WRK+  +G+
Sbjct:   67 GSAGECQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFP-NGRNDFDYPTFFARSLVQ----DYRPGACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHY--FGPVVPLTWKLSAGDKLTEFLQDPDRYYDP----NGFNAHYLRNLLFFDLG--YDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGR 324          
The following BLAST results are available for this feature:
BLAST of TCONS_00004481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G3ST11.199e-4233.95Galactosylceramide sulfotransferase OS=Homo sapien... [more]
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