TCONS_00004400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004400
Unique NameTCONS_00004400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004400 ID=TCONS_00004400|Name=TCONS_00004400|organism=Clytia hemisphaerica|type=transcript|length=1537bp
TTCGTATTAAAATTCACTATTTACAGCGGACTCTCACCAATTCGAACTTC
TAAATATTCGgatatttctataattcgaatttcttTATAAttcaagttcg
aattagagagagtcaactgtagtgCTTGATTTTCTGACCAAGATATCAAT
GAATTCGATCGTGTTCTCTTTGTTTCAGGTTTTTGATCCATACCCAAAGT
ATTGACAATAAcacatacaattttttttcattttagaataTATGTAAAAc
ataaaacacaaaaatataaaCCACAGAATTATGTCCTACAGAAACATATC
AAGCTCTGGTTATGGCAGAAAGAAGGCATCTCACTTCCCGACATCTCCAC
AACCCAAATCTGTTTTGAGACCAAAGCAATGGGATCCTTATGTGGAAGAA
GCATATCGTTTTCAAGTGGCAGGGTACCGTGATGAAAAAGAATACAAACA
TCTACAAAATGATGAAGAGgttgacCGTTGGCCAGATACGGGGTACGTGA
AGAAACTTCAACGGAAAGATGGAACATTTTATTATTACAGTAAAGCCAGA
GAGTGCAAAGAAAAAGATGTCAATCGAACTAAATTATATGCTTACTAAAC
AGTGTTCCTTACCTTCTCATAAGGGAATGGATTGCTACCTTTATCGTCAG
TTGGAATGTTAACGAAAGTTGAAAACCTTTAAAGAAATGTTGttggaaaa
gttttaaaataaattttgagatggTTAACTCTGGTTGTACCGAGAGATGA
TTTTCATGCGCTTAAAAGCAAAATGTATGTCTGTCAGAAGTAtgccaaaa
aagagaaaatctaAACTCAatcgaaattattttattttattattttataa
aattattgaagccttcggatgttctgagctttttgagtttttagaagctt
aaaaatgttcttaacatgttctttttttcGCCATAGTGTGGGTTAATGTC
CCAAAtaaagtccacaaagccttaaaggccggtctccacttgcgcgcgct
tcgatcgcgcTTTTTCgaacaaagcttccacgctattggtcaaaagaaaa
atgaagcaactccattggcgcgaactgacgtaacggttgaaaaaagttga
aatgtgttcaactttttttNGcttcatttttatgacgtaatcttttttcc
aagcaaaaaggattgaagcccaaAAGTGCGATcgtagcgcgcgcaagtgg
aaaccggccttaAGTTGTTCTCAAAATTTTGGCCATAGAAGCCTTGTATG
GCTTGTTCTTAAAAAGAACAATAATTTAGTTATTTTGTTTGCCTTccata
atatttttttaggatATTCTTTGATTTTTAGGTAGTGGACTTGCATTGAT
AGATATAATTGATATAATAAAGAAATGGTTTTTTTTTGTCACGCTTTCTC
TCGGGCGATGGGTCaaaactttggtcaaaattacTATCATATTCTCACAG
GTGCAACAAATCATAAATAAGGAAAGGAGCCCCATcagataaattatttt
tattgtatatattggaaatatttttttatgttatTAC
Run BLAST on NCBI

protein sequence of TCONS_00004400-protein

>TCONS_00004400-protein ID=TCONS_00004400-protein|Name=TCONS_00004400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MSYRNISSSGYGRKKASHFPTSPQPKSVLRPKQWDPYVEEAYRFQVAGYR
DEKEYKHLQNDEEVDRWPDTGYVKKLQRKDGTFYYYSKARECKEKDVNRT
KLYAY
Run BLAST on NCBI

transcript from alignment at sc0000044:194634..199584-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004400 ID=TCONS_00004400|Name=TCONS_00004400|organism=Clytia hemisphaerica|type=transcript|length=4951bp|location=Sequence derived from alignment at sc0000044:194634..199584- (Clytia hemisphaerica)
TTCGTATTAAAATTCACTATTTACAGCGGACTCTCACCAATTCGAACTTC
TAAATATTCGGATATTTCTATAATTCGAATTTCTTTATAATTCAAGTTCG
AATTAGAGAGAGTCAACTGTAGTGCTTGATTTTCTGACCAAGATATCAAT
GAATTCGATCGTGTTCTCTTTGTTTCAGGTTTTTGATCCATACCCAAAGT
ATTGACAATAACACATACAATTTTTTTTCATTTTAGAATATATGTAAAAC
ATAAAACACAAAAATATAAACCACAGAATTATGTCCTACAGAAACATATC
AAGCTCTGGTTATGGCAGAAAGAAGGCATCTCACTTCCCGACATCTCCAC
AACCCAAATCTGTTTTGAGACCAAAGCAATGGGATCCTTATGTGGAAGAA
GGTAATGTCTAAAAAAAATTAACATAGACAGTGCTGTAGCAACTTGGGGA
GGGGGACTATTGGGCTTCCTACTATGGCACTGAGGCTCAATATAGTAAGA
GAAGAACTTCTATATAATGATATTCATATTTTATTTTATTTTATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGGAAAGCC
GCTTTGAATAGATTTATAAAAGATTTCAACGATCATTTAGGTCATTACCG
AGACGTTTTCTCTCCATCTATATCTTTATTACCTCCATGATCAGATTTAA
AAAGATAAATAACTCAATTCTAAATTGCTTTTTTTAAACCCTTGTCATAA
CTTTTCGAAATTAAACATGTAAAATGACGTAAGTTTTTAATAGTATCAAC
CACTGGAATGTTTTTATATGAAGAAAAAGATGGACTAATTTCTTCTCTTG
CTTTTTATCGCCCTTTGCTGAAAGAAAGGCTGAATAAAGTCTAAACCATG
CTCTATTCGATCCGTCAATCAAAACAAACTTATCGAGAACAAAACATTGC
TTGCGAAATCGAAAGTGTGCGCGAATCCAATAGAACAAATTTGTGGAGCA
ATAGACTAAAAGTCATAATTTTAAAACACAAACAAAGCGAAAACGAAAGT
GGTGACACACAGACACACAAAGCACCGCTATTAATATATAGATTTATACA
TTGCTGAAAAGTTTAAGATCACCTCATTACAAACTATAGATAAAAAGCTC
CTTTTCTTGGACGTTTTTGCTCTTTGCTAGGGATTGAAAAAAACAAAAAA
ATACAAAATTCGATTTTGGTTAGGAAATTTTTCGTCACTTCGCTGAAATG
TTTCACATATCTGAGAAACAACTGGTTTTGTTGATTACTTTCCTTTCTCT
TCTTCAGCATATCGTTTTCAAGTGGCAGGGTACCGTGATGAAAAAGAATA
CAAACATCTACAAAATGATGAAGAGGTTAGTTCATTTTTGATGAAATAAC
TCTATAACGCTATATTAAAAGTTTTTATTTTTACATAGGTGTTCCCGTTT
CATATCAGACACATATTTTATATCAGGACAGTGTCTTGCTATTGTTATAC
TGTGCAAATTTTGGTAGACCTACATAAAAAACACTTTGTGTAATTTAAAA
AATAATTTTCGACATGTTTTTTCTGAACCACCCGGTATTATGCTGATATA
AGCAAAAAAAAGTTTTTCTTTCCCTCTTTCTGATCAATATTGCTCCACAC
CCGTGCCAATCCAATGTGAAAAAGTTTCTGAATTAAAACGATATCAACAT
CTTATTTAAAGACAAAACCTTTAATTGTTCCCTTGCCAGCTACTTTCTAA
AGGATACAGAGAATGTATACAGATGTTTTTTACATAACATCTCTGTAAAA
ATAGGGTTCAAAGTTCTCACTCCACTGAGTTTTTGAGATCTCAATTTTAA
ACCCGGTGAAATATTACGCTTTTCCTAGCCACCCTGGATGATTCTAAAAC
TTCACCGGGTCATTGAGACATGGCTGTAACTAGACTAGTAAACAAGTCGG
TTATAACCTTATAATAAAACTGTCAATGAAATAATGTAAACGCTAATTAA
ATATTCAGTGCGCGTGAGAGAAAAGGAAAATAACCGACTAGAAGCTACTT
CCTACGCCTTTTTTTCTTCACCTAAAATCGTAAGGATAGACACACAGATT
TCTGTATGTCTGACCCGTGCGGGGTTGCATTTATTTTTCTTTCTGTTTAT
TGCGTTTTTAGAAATGCTCATTTATTTATATGTTCCCATGTTTAATGTTA
CTATGAAATATCATTTAGTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTATTTACATGTTCCCATGTTTAATGTTACTATGAAATA
TCATTTAGTCAAAAAAGTTGGATGGATTCTCAAAAACCTAAAAAAAGTTG
TAAAATTAAAAAACGTTTTTTAAGGGAAGTAGCTTCTAGTCGTTAAAATT
CAGAAAAGAGACGGAACTTCACCCCTTCGATTCTTTTTATTTGGAGCTTG
ATTTTTTGTATATGGGTCTGTTTTCAACGACTAGTTTATTAGTCTAGGCT
GTAACACAAAGTATAATTGACTTTGGCATCCACATCTCGCCTTTCTTCGG
GAGAAACTATTCTGTAGTCTACTTACAGTGAAAGGGTTCGGGATTTGGTT
TCTTGTCAAATGAAACATAGATATAATGGGCCACTCCCCCTCACTTTGTT
TCAAATGAAAAATTACTAAAACCTACATTAACTTCATTTCTAGGTAAGAT
CAGTCTGAAAAGGGGGCCATTTTAAGGCATATTAACCTTGCGCCTCCTTA
GTCACTATACATTTTTGGCCCCTCCACCACTGTCCAGAGCGTTGCCCCTT
AAATTAATTTGTTCTCTCGTCAACTTTTTTTAGGTTGACCGTTGGCCAGA
TACGGGGTACGTGAAGAAACTTCAACGGAAAGATGGAACATTTTATTATT
ACAGTAAAGCCAGAGAGTGCAAAGAAAAAGATGTCAATCGAACTAAATTA
TATGCTTACTAAACAGTGTTCCTTACCTTCTCATAAGGGAATGGATTGCT
ACCTTTATCGTCAGTTGGAATGTTAACGAAAGTTGAAAACCTTTAAAGAA
ATGTTGTTGGAAAAGTTTTAAAATAAATTTTGAGATGGTTAACTCTGGTT
GTACCGAGAGATGATTTTCATGCGCTTAAAAGCAAAATGTATGTCTGTCA
GAAGTATGCCAAAAAAGAGAAAATCTAAACTCAATCGAAATTATTTTATT
TTATTATTTTATAAAATTATTGAAGCCTTCGGATGTTCTGAGCTTTTTGA
GTTTTTAGAAGCTTAAAAATGTTCTTAACATGTTCTTTTTTTCGCCATAG
TGTGGGTTAATGTCCCAAATAAAGTCCACAAAGCCTTAAAGGCCGGTCTC
CACTTGCGCGCGCTTCGATCGCGCTTTTTCGAACAAAGCTTCCACGCTAT
TGGTCAAAAGAAAAATGAAGCAACTCCATTGGCGCGAACTGACGTAACGG
TTGAAAAAAGTTGAAATGTGTTCAACTTTTTTTNGCTTCATTTTTATGAC
GTAATCTTTTTTCCAAGCAAAAAGGATTGAAGCCCAAAAGTGCGATCGTA
GCGCGCGCAAGTGGAAACCGGCCTTAAGTTGTTCTCAAAATTTTGGCCAT
AGAAGCCTTGTATGGCTTGTTCTTAAAAAGAACAATAATTTAGTTATTTT
GTTTGCCTTCCATAATATTTTTTTAGGATATTCTTTGATTTTTAGGTAGT
GGACTTGCATTGATAGATATAATTGATATAATAAAGAAATGGTTTTTTTT
TGTCACGCTTTCTCTCGGGCGATGGGTCAAAACTTTGGTCAAAATTACTA
TCATATTCTCACAGGTGCAACAAATCATAAATAAGGAAAGGAGCCCCATC
AGATAAATTATTTTTATTGTATATATTGGAAATATTTTTTTATGTTATTA
C

Coding sequence (CDS) from alignment at sc0000044:194634..199584-

>TCONS_00004400 ID=TCONS_00004400|Name=TCONS_00004400|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000044:194634..199584- (Clytia hemisphaerica)
GTTGACCGTTGGCCAGATACGGGGTACGTGAAGAAACTTCAACGGAAAGA
TGGAACATTTTATTATTACAGTAAAGCCAGAGAGTGCAAAGAAAAAGATG
TCAATCGAACTAAATTATATGCTTACTAACATATCGTTTTCAAGTGGCAG
GGTACCGTGATGAAAAAGAATACAAACATCTACAAAATGATGAAGAGATG
TCCTACAGAAACATATCAAGCTCTGGTTATGGCAGAAAGAAGGCATCTCA
CTTCCCGACATCTCCACAACCCAAATCTGTTTTGAGACCAAAGCAATGGG
ATCCTTATGTGGAAGAAGGTTGACCGTTGGCCAGATACGGGGTACGTGAA
GAAACTTCAACGGAAAGATGGAACATTTTATTATTACAGTAAAGCCAGAG
AGTGCAAAGAAAAAGATGTCAATCGAACTAAATTATATGCTTACTAACAT
ATCGTTTTCAAGTGGCAGGGTACCGTGATGAAAAAGAATACAAACATCTA
CAAAATGATGAAGAGATGTCCTACAGAAACATATCAAGCTCTGGTTATGG
CAGAAAGAAGGCATCTCACTTCCCGACATCTCCACAACCCAAATCTGTTT
TGAGACCAAAGCAATGGGATCCTTATGTGGAAGAAGGTTGACCGTTGGCC
AGATACGGGGTACGTGAAGAAACTTCAACGGAAAGATGGAACATTTTATT
ATTACAGTAAAGCCAGAGAGTGCAAAGAAAAAGATGTCAATCGAACTAAA
TTATATGCTTACTAACATATCGTTTTCAAGTGGCAGGGTACCGTGATGAA
AAAGAATACAAACATCTACAAAATGATGAAGAGATGTCCTACAGAAACAT
ATCAAGCTCTGGTTATGGCAGAAAGAAGGCATCTCACTTCCCGACATCTC
CACAACCCAAATCTGTTTTGAGACCAAAGCAATGGGATCCTTATGTGGAA
GAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002460XLOC_002460Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004400-proteinTCONS_00004400-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004400-exon-sc0000044-1575043694:199184..199584TCONS_00004400-exon-sc0000044-1575043694:199184..199584Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1575043694:197160..197227TCONS_00004400-exon-sc0000044-1575043694:197160..197227Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1575043694:194634..195701TCONS_00004400-exon-sc0000044-1575043694:194634..195701Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1510915933:199184..199584TCONS_00004400-exon-sc0000044-1510915933:199184..199584Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1510915933:197160..197227TCONS_00004400-exon-sc0000044-1510915933:197160..197227Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1510915933:194634..195701TCONS_00004400-exon-sc0000044-1510915933:194634..195701Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1491911889:199184..199584TCONS_00004400-exon-sc0000044-1491911889:199184..199584Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1491911889:197160..197227TCONS_00004400-exon-sc0000044-1491911889:197160..197227Clytia hemisphaericaexon
TCONS_00004400-exon-sc0000044-1491911889:194634..195701TCONS_00004400-exon-sc0000044-1491911889:194634..195701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:194634..199584 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.367	19.4168	17.0713	17.397	12.4767	9.89903	12.3448	12.2796	9.26257	10.9969	8.43834	7.78678	4.77447	4.54966	6.81814	7.00173	9.28688	8.94218	4.26218	4.25272	10.2187	11.2269	16.2096	14.208	69.0382	46.2704	13.3711	11.9048	12.4805	12.5807
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020186Meiosis-expressed_gene_1
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
Blast
[Close]
BLAST of TCONS_00004400 vs. Swiss-Prot (Human)
Match: MEIG1 (Meiosis expressed gene 1 protein homolog OS=Homo sapiens GN=MEIG1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.367e-27
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 2 
Query:  338 PTSPQPKSVLRPKQWDPYVEEAYRFQVAGYRDEKEYKHLQNDEEVDRWPDTGYVKKLQRKDGTFYYYSKARECKEKDVNRTKLYAY 595
             +  +PKSV   K+W   +E  YRFQ AGYRDE EY+ ++    VDRWP+TGYVKKLQR+D TFYYY+K REC +K+V++ K+YAY
Sbjct:    3 SSDVKPKSVSHAKKWSEEIENLYRFQQAGYRDETEYRQVKQVSMVDRWPETGYVKKLQRRDNTFYYYNKQRECDDKEVHKVKIYAY 88
The following BLAST results are available for this feature:
BLAST of TCONS_00004400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEIG11.367e-2756.98Meiosis expressed gene 1 protein homolog OS=Homo s... [more]
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