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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004400 ID=TCONS_00004400|Name=TCONS_00004400|organism=Clytia hemisphaerica|type=transcript|length=1537bp TTCGTATTAAAATTCACTATTTACAGCGGACTCTCACCAATTCGAACTTC TAAATATTCGgatatttctataattcgaatttcttTATAAttcaagttcg aattagagagagtcaactgtagtgCTTGATTTTCTGACCAAGATATCAAT GAATTCGATCGTGTTCTCTTTGTTTCAGGTTTTTGATCCATACCCAAAGT ATTGACAATAAcacatacaattttttttcattttagaataTATGTAAAAc ataaaacacaaaaatataaaCCACAGAATTATGTCCTACAGAAACATATC AAGCTCTGGTTATGGCAGAAAGAAGGCATCTCACTTCCCGACATCTCCAC AACCCAAATCTGTTTTGAGACCAAAGCAATGGGATCCTTATGTGGAAGAA GCATATCGTTTTCAAGTGGCAGGGTACCGTGATGAAAAAGAATACAAACA TCTACAAAATGATGAAGAGgttgacCGTTGGCCAGATACGGGGTACGTGA AGAAACTTCAACGGAAAGATGGAACATTTTATTATTACAGTAAAGCCAGA GAGTGCAAAGAAAAAGATGTCAATCGAACTAAATTATATGCTTACTAAAC AGTGTTCCTTACCTTCTCATAAGGGAATGGATTGCTACCTTTATCGTCAG TTGGAATGTTAACGAAAGTTGAAAACCTTTAAAGAAATGTTGttggaaaa gttttaaaataaattttgagatggTTAACTCTGGTTGTACCGAGAGATGA TTTTCATGCGCTTAAAAGCAAAATGTATGTCTGTCAGAAGTAtgccaaaa aagagaaaatctaAACTCAatcgaaattattttattttattattttataa aattattgaagccttcggatgttctgagctttttgagtttttagaagctt aaaaatgttcttaacatgttctttttttcGCCATAGTGTGGGTTAATGTC CCAAAtaaagtccacaaagccttaaaggccggtctccacttgcgcgcgct tcgatcgcgcTTTTTCgaacaaagcttccacgctattggtcaaaagaaaa atgaagcaactccattggcgcgaactgacgtaacggttgaaaaaagttga aatgtgttcaactttttttNGcttcatttttatgacgtaatcttttttcc aagcaaaaaggattgaagcccaaAAGTGCGATcgtagcgcgcgcaagtgg aaaccggccttaAGTTGTTCTCAAAATTTTGGCCATAGAAGCCTTGTATG GCTTGTTCTTAAAAAGAACAATAATTTAGTTATTTTGTTTGCCTTccata atatttttttaggatATTCTTTGATTTTTAGGTAGTGGACTTGCATTGAT AGATATAATTGATATAATAAAGAAATGGTTTTTTTTTGTCACGCTTTCTC TCGGGCGATGGGTCaaaactttggtcaaaattacTATCATATTCTCACAG GTGCAACAAATCATAAATAAGGAAAGGAGCCCCATcagataaattatttt tattgtatatattggaaatatttttttatgttatTAC Run BLAST on NCBI protein sequence of TCONS_00004400-protein >TCONS_00004400-protein ID=TCONS_00004400-protein|Name=TCONS_00004400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MSYRNISSSGYGRKKASHFPTSPQPKSVLRPKQWDPYVEEAYRFQVAGYR DEKEYKHLQNDEEVDRWPDTGYVKKLQRKDGTFYYYSKARECKEKDVNRT KLYAY Run BLAST on NCBI transcript from alignment at sc0000044:194634..199584- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004400 ID=TCONS_00004400|Name=TCONS_00004400|organism=Clytia hemisphaerica|type=transcript|length=4951bp|location=Sequence derived from alignment at sc0000044:194634..199584- (Clytia hemisphaerica) TTCGTATTAAAATTCACTATTTACAGCGGACTCTCACCAATTCGAACTTC
TAAATATTCGGATATTTCTATAATTCGAATTTCTTTATAATTCAAGTTCG
AATTAGAGAGAGTCAACTGTAGTGCTTGATTTTCTGACCAAGATATCAAT
GAATTCGATCGTGTTCTCTTTGTTTCAGGTTTTTGATCCATACCCAAAGT
ATTGACAATAACACATACAATTTTTTTTCATTTTAGAATATATGTAAAAC
ATAAAACACAAAAATATAAACCACAGAATTATGTCCTACAGAAACATATC
AAGCTCTGGTTATGGCAGAAAGAAGGCATCTCACTTCCCGACATCTCCAC
AACCCAAATCTGTTTTGAGACCAAAGCAATGGGATCCTTATGTGGAAGAA
GGTAATGTCTAAAAAAAATTAACATAGACAGTGCTGTAGCAACTTGGGGA
GGGGGACTATTGGGCTTCCTACTATGGCACTGAGGCTCAATATAGTAAGA
GAAGAACTTCTATATAATGATATTCATATTTTATTTTATTTTATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGGAAAGCC
GCTTTGAATAGATTTATAAAAGATTTCAACGATCATTTAGGTCATTACCG
AGACGTTTTCTCTCCATCTATATCTTTATTACCTCCATGATCAGATTTAA
AAAGATAAATAACTCAATTCTAAATTGCTTTTTTTAAACCCTTGTCATAA
CTTTTCGAAATTAAACATGTAAAATGACGTAAGTTTTTAATAGTATCAAC
CACTGGAATGTTTTTATATGAAGAAAAAGATGGACTAATTTCTTCTCTTG
CTTTTTATCGCCCTTTGCTGAAAGAAAGGCTGAATAAAGTCTAAACCATG
CTCTATTCGATCCGTCAATCAAAACAAACTTATCGAGAACAAAACATTGC
TTGCGAAATCGAAAGTGTGCGCGAATCCAATAGAACAAATTTGTGGAGCA
ATAGACTAAAAGTCATAATTTTAAAACACAAACAAAGCGAAAACGAAAGT
GGTGACACACAGACACACAAAGCACCGCTATTAATATATAGATTTATACA
TTGCTGAAAAGTTTAAGATCACCTCATTACAAACTATAGATAAAAAGCTC
CTTTTCTTGGACGTTTTTGCTCTTTGCTAGGGATTGAAAAAAACAAAAAA
ATACAAAATTCGATTTTGGTTAGGAAATTTTTCGTCACTTCGCTGAAATG
TTTCACATATCTGAGAAACAACTGGTTTTGTTGATTACTTTCCTTTCTCT
TCTTCAGCATATCGTTTTCAAGTGGCAGGGTACCGTGATGAAAAAGAATA
CAAACATCTACAAAATGATGAAGAGGTTAGTTCATTTTTGATGAAATAAC
TCTATAACGCTATATTAAAAGTTTTTATTTTTACATAGGTGTTCCCGTTT
CATATCAGACACATATTTTATATCAGGACAGTGTCTTGCTATTGTTATAC
TGTGCAAATTTTGGTAGACCTACATAAAAAACACTTTGTGTAATTTAAAA
AATAATTTTCGACATGTTTTTTCTGAACCACCCGGTATTATGCTGATATA
AGCAAAAAAAAGTTTTTCTTTCCCTCTTTCTGATCAATATTGCTCCACAC
CCGTGCCAATCCAATGTGAAAAAGTTTCTGAATTAAAACGATATCAACAT
CTTATTTAAAGACAAAACCTTTAATTGTTCCCTTGCCAGCTACTTTCTAA
AGGATACAGAGAATGTATACAGATGTTTTTTACATAACATCTCTGTAAAA
ATAGGGTTCAAAGTTCTCACTCCACTGAGTTTTTGAGATCTCAATTTTAA
ACCCGGTGAAATATTACGCTTTTCCTAGCCACCCTGGATGATTCTAAAAC
TTCACCGGGTCATTGAGACATGGCTGTAACTAGACTAGTAAACAAGTCGG
TTATAACCTTATAATAAAACTGTCAATGAAATAATGTAAACGCTAATTAA
ATATTCAGTGCGCGTGAGAGAAAAGGAAAATAACCGACTAGAAGCTACTT
CCTACGCCTTTTTTTCTTCACCTAAAATCGTAAGGATAGACACACAGATT
TCTGTATGTCTGACCCGTGCGGGGTTGCATTTATTTTTCTTTCTGTTTAT
TGCGTTTTTAGAAATGCTCATTTATTTATATGTTCCCATGTTTAATGTTA
CTATGAAATATCATTTAGTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTATTTACATGTTCCCATGTTTAATGTTACTATGAAATA
TCATTTAGTCAAAAAAGTTGGATGGATTCTCAAAAACCTAAAAAAAGTTG
TAAAATTAAAAAACGTTTTTTAAGGGAAGTAGCTTCTAGTCGTTAAAATT
CAGAAAAGAGACGGAACTTCACCCCTTCGATTCTTTTTATTTGGAGCTTG
ATTTTTTGTATATGGGTCTGTTTTCAACGACTAGTTTATTAGTCTAGGCT
GTAACACAAAGTATAATTGACTTTGGCATCCACATCTCGCCTTTCTTCGG
GAGAAACTATTCTGTAGTCTACTTACAGTGAAAGGGTTCGGGATTTGGTT
TCTTGTCAAATGAAACATAGATATAATGGGCCACTCCCCCTCACTTTGTT
TCAAATGAAAAATTACTAAAACCTACATTAACTTCATTTCTAGGTAAGAT
CAGTCTGAAAAGGGGGCCATTTTAAGGCATATTAACCTTGCGCCTCCTTA
GTCACTATACATTTTTGGCCCCTCCACCACTGTCCAGAGCGTTGCCCCTT
AAATTAATTTGTTCTCTCGTCAACTTTTTTTAGGTTGACCGTTGGCCAGA
TACGGGGTACGTGAAGAAACTTCAACGGAAAGATGGAACATTTTATTATT
ACAGTAAAGCCAGAGAGTGCAAAGAAAAAGATGTCAATCGAACTAAATTA
TATGCTTACTAAACAGTGTTCCTTACCTTCTCATAAGGGAATGGATTGCT
ACCTTTATCGTCAGTTGGAATGTTAACGAAAGTTGAAAACCTTTAAAGAA
ATGTTGTTGGAAAAGTTTTAAAATAAATTTTGAGATGGTTAACTCTGGTT
GTACCGAGAGATGATTTTCATGCGCTTAAAAGCAAAATGTATGTCTGTCA
GAAGTATGCCAAAAAAGAGAAAATCTAAACTCAATCGAAATTATTTTATT
TTATTATTTTATAAAATTATTGAAGCCTTCGGATGTTCTGAGCTTTTTGA
GTTTTTAGAAGCTTAAAAATGTTCTTAACATGTTCTTTTTTTCGCCATAG
TGTGGGTTAATGTCCCAAATAAAGTCCACAAAGCCTTAAAGGCCGGTCTC
CACTTGCGCGCGCTTCGATCGCGCTTTTTCGAACAAAGCTTCCACGCTAT
TGGTCAAAAGAAAAATGAAGCAACTCCATTGGCGCGAACTGACGTAACGG
TTGAAAAAAGTTGAAATGTGTTCAACTTTTTTTNGCTTCATTTTTATGAC
GTAATCTTTTTTCCAAGCAAAAAGGATTGAAGCCCAAAAGTGCGATCGTA
GCGCGCGCAAGTGGAAACCGGCCTTAAGTTGTTCTCAAAATTTTGGCCAT
AGAAGCCTTGTATGGCTTGTTCTTAAAAAGAACAATAATTTAGTTATTTT
GTTTGCCTTCCATAATATTTTTTTAGGATATTCTTTGATTTTTAGGTAGT
GGACTTGCATTGATAGATATAATTGATATAATAAAGAAATGGTTTTTTTT
TGTCACGCTTTCTCTCGGGCGATGGGTCAAAACTTTGGTCAAAATTACTA
TCATATTCTCACAGGTGCAACAAATCATAAATAAGGAAAGGAGCCCCATC
AGATAAATTATTTTTATTGTATATATTGGAAATATTTTTTTATGTTATTA
C Coding sequence (CDS) from alignment at sc0000044:194634..199584- >TCONS_00004400 ID=TCONS_00004400|Name=TCONS_00004400|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000044:194634..199584- (Clytia hemisphaerica) GTTGACCGTTGGCCAGATACGGGGTACGTGAAGAAACTTCAACGGAAAGA TGGAACATTTTATTATTACAGTAAAGCCAGAGAGTGCAAAGAAAAAGATG TCAATCGAACTAAATTATATGCTTACTAACATATCGTTTTCAAGTGGCAG GGTACCGTGATGAAAAAGAATACAAACATCTACAAAATGATGAAGAGATG TCCTACAGAAACATATCAAGCTCTGGTTATGGCAGAAAGAAGGCATCTCA CTTCCCGACATCTCCACAACCCAAATCTGTTTTGAGACCAAAGCAATGGG ATCCTTATGTGGAAGAAGGTTGACCGTTGGCCAGATACGGGGTACGTGAA GAAACTTCAACGGAAAGATGGAACATTTTATTATTACAGTAAAGCCAGAG AGTGCAAAGAAAAAGATGTCAATCGAACTAAATTATATGCTTACTAACAT ATCGTTTTCAAGTGGCAGGGTACCGTGATGAAAAAGAATACAAACATCTA CAAAATGATGAAGAGATGTCCTACAGAAACATATCAAGCTCTGGTTATGG CAGAAAGAAGGCATCTCACTTCCCGACATCTCCACAACCCAAATCTGTTT TGAGACCAAAGCAATGGGATCCTTATGTGGAAGAAGGTTGACCGTTGGCC AGATACGGGGTACGTGAAGAAACTTCAACGGAAAGATGGAACATTTTATT ATTACAGTAAAGCCAGAGAGTGCAAAGAAAAAGATGTCAATCGAACTAAA TTATATGCTTACTAACATATCGTTTTCAAGTGGCAGGGTACCGTGATGAA AAAGAATACAAACATCTACAAAATGATGAAGAGATGTCCTACAGAAACAT ATCAAGCTCTGGTTATGGCAGAAAGAAGGCATCTCACTTCCCGACATCTC CACAACCCAAATCTGTTTTGAGACCAAAGCAATGGGATCCTTATGTGGAA GAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004400-exon-sc0000044-1575043694:199184..199584 | TCONS_00004400-exon-sc0000044-1575043694:199184..199584 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1575043694:197160..197227 | TCONS_00004400-exon-sc0000044-1575043694:197160..197227 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1575043694:194634..195701 | TCONS_00004400-exon-sc0000044-1575043694:194634..195701 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1510915933:199184..199584 | TCONS_00004400-exon-sc0000044-1510915933:199184..199584 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1510915933:197160..197227 | TCONS_00004400-exon-sc0000044-1510915933:197160..197227 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1510915933:194634..195701 | TCONS_00004400-exon-sc0000044-1510915933:194634..195701 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1491911889:199184..199584 | TCONS_00004400-exon-sc0000044-1491911889:199184..199584 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1491911889:197160..197227 | TCONS_00004400-exon-sc0000044-1491911889:197160..197227 | Clytia hemisphaerica | exon |
TCONS_00004400-exon-sc0000044-1491911889:194634..195701 | TCONS_00004400-exon-sc0000044-1491911889:194634..195701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000044 | supercontig | sc0000044:194634..199584 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR020186 | Meiosis-expressed_gene_1 |
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0005634 |
nucleus |
Blast
BLAST of TCONS_00004400 vs. Swiss-Prot (Human)
Match: MEIG1 (Meiosis expressed gene 1 protein homolog OS=Homo sapiens GN=MEIG1 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.367e-27 Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 2
Query: 338 PTSPQPKSVLRPKQWDPYVEEAYRFQVAGYRDEKEYKHLQNDEEVDRWPDTGYVKKLQRKDGTFYYYSKARECKEKDVNRTKLYAY 595
+ +PKSV K+W +E YRFQ AGYRDE EY+ ++ VDRWP+TGYVKKLQR+D TFYYY+K REC +K+V++ K+YAY
Sbjct: 3 SSDVKPKSVSHAKKWSEEIENLYRFQQAGYRDETEYRQVKQVSMVDRWPETGYVKKLQRRDNTFYYYNKQRECDDKEVHKVKIYAY 88
The following BLAST results are available for this feature:
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