TCONS_00004338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004338
Unique NameTCONS_00004338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004338 ID=TCONS_00004338|Name=TCONS_00004338|organism=Clytia hemisphaerica|type=transcript|length=3617bp
CCTTCCTATATTTCCAATTCAAAAGGACTGCTTCTTTATAACTTCAAAAA
CttgagaaaattcacttcaaagaaggggatttttttctgggacaccctcA
AAACAATGCAATTTGTGCCTGAAAGAGGGATATCATATTATGACTTCAGa
acttgaattaattttaacaagacgactcagagtcgaaaatttcgcatagt
GCTCGATTATTCGTAgataaaataatcatattaaacGACCGGGGAGTACT
AGGGTTGGAGAATATCAGGTCAGACCTGAGAAAACTGGCCCTAACAGAGA
ATAAagctacccttagagagacaagGCAAAAAAAGTGACTCTTAAATAAA
GCACATTTTCATTTTcgactttttaagtttttcgtACAGTACCTTAAATA
ATTCAGAGACTTGGGAAGGTCAAAACCAGAATTTTAGCATCAGCACACAC
CTGACACCTAGTTATGCCTAAGTTACTACCCACCCTCACCATTAATAGAA
TGCAATAAATAGAACGGGACTAACTATTGGAATTTTTccttcgtgattgc
gtgatgagaggtcaaaacgtgattgTGATTTAAAAGGTTTTTGAGCCGTG
CTatgtgatttggactttttcaaagggatgcgtgattgtccatttttttg
ctgatttgcgtgatcgttattgaagacaaaaattgcgtgatatcgtgatc
agagttaccgcttGGTAATCGATAGATTGCATATCAATagattttaaaat
aattgataaatcCAGATTTTAAGGGAAGCGCGATTGGCAATAGATTGATT
GATTTTCCATCGATTGACTTAAAAGATGTTCGATTGATCACAATCGACAG
CCCAGaacagccaatgaaaaaaatctacaatCAATCTATACTCAAGACTT
TAGAATTGTCTTGATTGATTACCTATTGATTATCAAAATCAATCGATATC
CAATCAATCGGTTGGTTAGCGATTACTCATCGATTggaaaaagttattga
ttgtattgcGTGGAAAAGTCTGGAACTGACACATTGCACCACTACCTGCC
ACATAGAACTATATAGAACAGCATAGAACTTCTATAAATTATATAGATTG
ACACCCCTTGCCATAAATTCCTCTGTGAAATACTTAGTAAATGATAATCT
GTAAACATAAGATCATACCTGCTGTCTGTGTTGTTGTTTATGTGTAGTGA
TGTTCAAGAGCAATTCTTTAATTATAAGATTCCTAtcactttattggtgc
atttactaactacacaaacataaaatactacgctaaaagaaatataaacc
tctttaaagcactctaaaaagaccaaaaacatgataaaaatacaaacaaC
CAAAGCATAAAACCTGACAGCATGCTGAATACGCCATTTGTTAAAAATGA
GCAATGTTTACAAATGCTTGGTTACGTCTACCTAGCACTTGCGGACTGAA
ATTATGAAACAAAATGCGAAATTTTATCTTAGCGAGTTAGTCCATCTTTA
GAATTTTATTAGAATATTCGAGAAGTTTCTAACACCGTGGCCACCGTGGT
caggcactttcgttttcaaaattttattccaCACCGACGAccaccgcgaa
aggctatcgtaatactttcgctatgccaAATTAATAAATGTTAGGAATTA
ATATCCAAATGTGGTCTTTTTCatacattattttttattaccCTTTTATA
CATATACATACATCAATTTTTATTGCACCGATTATctcattttataaaat
ttttcagctttttgaatgaagagaatttcaaattaggttcattttatttg
tacatGTGTATATACATAAGTGCAGTAGTACGAAAACTCTGACTAGTACA
TCTTTTTACTTTCTGTTGTGACGAAagatatcttttaatattttaagtgc
aaaaataaataaataaaaattctaaTAATAAGGTTGATGAAAATCtacca
atcaaaatttaaaaaaaattttctttagcaaGTCCATGCACCGCAATTGT
TTTGTACTGATTGTATGACTTTTGTCTGCTCTCCTCTGTACACTGTCCCC
CGTTTTCGCAATTtgtaaaaaactaataaattggGTGGTTTCTACAAGGA
TGTGTATTAAAAGAATGATTTCCTATCGGGCCCATTTTATTAAACTGTCC
TTATTGCATCACTGCATTCGGTCCTAAACCAGACCCATACCCATTAACCA
ATCATATTTTGGACTGATGACGTGATTTTAATGATTGAGACTCcgcattt
tgaaaattctaaaacatGATGTGAGTTCTCGAGCTCGTTTGTAAGTGGAG
AGGTCATTTGGGAGACCCAATTTTTGTtgaacttcagttgagctagaatg
tGTGTGTATGTCCACGAACATACATATAAAGCGGAATAATTGGTCTAAGA
AGCTGAAATTTGACACACACATTCCTAAGGTAAATACCCAGGGgtgttat
ttttttctcttcacttgagaaaatgattgacagattaaagtttttcacct
cTCTATCAATCTATCTATTgtggttgagttacaggaggctcttgagccca
ttctcgcaactatagatgcttttgagtaagcatcccgtcagcaccttgaa
ctgactacccatttcccctcacatggcatgggttgacctgggccaaggtt
tgttcacttgccaagtaaaCTGTCGTGAGTGGAATCGAACCTTGAtcgcc
tgtacaggaatcaaggttggTGTCCACTATACCACAATGCGGGCGTTCTG
CGAGCATTCTCTGCTCAATCCACAGACCGTGCTAAACTGGTAGACTtagc
tgtgacagatcatttcaatggaagttgttggaatgtttacaaggctcttg
acagaaaatcctttgttttattgtcaatgatgacagtatcgttattaatt
ttgttagatctgacatattgatatTTGTAacttgtaagtgcactttatag
ttttgattcacattgaagaatcatattttggttctcatgttattagatgc
tgttttagaactttagagctagcctgattgaatgacctggctggtcatta
aaatacaaagttaaatcaaaacaaaatctcCTAATCATGAAAGTGATGTC
ATACATAATTATGTTTTGATCATGATTGCATGTCCGGCAGCCATCGAGAA
ACATCTGAATTCCTGCCATCTTAAAATagtatgattttttattatcctAA
CCACGTTGTTTTATTTACGCACAATTATGTCGGCGAGTAACTTGTCAAAA
ATACTTGCGTGGCAAATATGAGATTTtgaaatggtagagtagagctgcga
gcggcgCTTCGTAGTTCTTGCACTGTTGTtacgtttgttttgaaatttgc
tgaTTTGGTTGGTCAGAAGCATCGGGCGGTTCAAGTTATAGTCTGCTGTT
ACCCCCTGTGGATGACATGGATTTTCCggaacaatttacttttgaaaaac
ttcaggatttccgtaaaattcaagattttttatgggaaaatgttggattt
tcttatataaaatgGCAAGaaacagtgcgtcacaaacagccatataaaca
aaactcaacattctcacaaaagttgtctttttgatttcccaaacattcgt
ctcaagcgttccCTTCC
Run BLAST on NCBI

transcript from alignment at sc0000041:526644..530260

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004338 ID=TCONS_00004338|Name=TCONS_00004338|organism=Clytia hemisphaerica|type=transcript|length=3617bp|location=Sequence derived from alignment at sc0000041:526644..530260 (Clytia hemisphaerica)
GGAAGggaacgcttgagacgaatgtttgggaaatcaaaaagacaactttt gtgagaatgttgagttttgtttatatggctgtttgtgacgcactgtttCT TGCcattttatataagaaaatccaacattttcccataaaaaatcttgaat tttacggaaatcctgaagtttttcaaaagtaaattgttccGGAAAATCCA TGTCATCCACAGGGGGTAACAGCAGACTATAACTTGAACCGCCCGATGCT TCTGACCAACCAAAtcagcaaatttcaaaacaaacgtaACAACAGTGCAA GAACTACGAAGcgccgctcgcagctctactctaccatttcaAAATCTCAT ATTTGCCACGCAAGTATTTTTGACAAGTTACTCGCCGACATAATTGTGCG TAAATAAAACAACGTGGTTaggataataaaaaatcatactATTTTAAGAT GGCAGGAATTCAGATGTTTCTCGATGGCTGCCGGACATGCAATCATGATC AAAACATAATTATGTATGACATCACTTTCATGATTAGgagattttgtttt gatttaactttgtattttaatgaccagccaggtcattcaatcaggctagc tctaaagttctaaaacagcatctaataacatgagaaccaaaatatgattc ttcaatgtgaatcaaaactataaagtgcacttacaagtTACAAatatcaa tatgtcagatctaacaaaattaataacgatactgtcatcattgacaataa aacaaaggattttctgtcaagagccttgtaaacattccaacaacttccat tgaaatgatctgtcacagctaAGTCTACCAGTTTAGCACGGTCTGTGGAT TGAGCAGAGAATGCTCGCAGAACGCCCGCATTGTGGTATAGTGGACAcca accttgattcctgtacaggcgaTCAAGGTTCGATTCCACTCACGACAGtt tacttggcaagtgaacaaaccttggcccaggtcaacccatgccatgtgag gggaaatgggtagtcagttcaaggtgctgacgggatgcttactcaaaagc atctatagttgcgagaatgggctcaagagcctcctgtaactcaaccacAA TAGATAGATTGATAGAgaggtgaaaaactttaatctgtcaatcattttct caagtgaagagaaaaaaataacacCCCTGGGTATTTACCTTAGGAATGTG TGTGTCAAATTTCAGCTTCTTAGACCAATTATTCCGCTTTATATGTATGT TCGTGGACATACACACacattctagctcaactgaagttcaACAAAAATTG GGTCTCCCAAATGACCTCTCCACTTACAAACGAGCTCGAGAACTCACATC atgttttagaattttcaaaatgcgGAGTCTCAATCATTAAAATCACGTCA TCAGTCCAAAATATGATTGGTTAATGGGTATGGGTCTGGTTTAGGACCGA ATGCAGTGATGCAATAAGGACAGTTTAATAAAATGGGCCCGATAGGAAAT CATTCTTTTAATACACATCCTTGTAGAAACCACccaatttattagttttt tacaAATTGCGAAAACGGGGGACAGTGTACAGAGGAGAGCAGACAAAAGT CATACAATCAGTACAAAACAATTGCGGTGCATGGACttgctaaagaaaat tttttttaaattttgattggtaGATTTTCATCAACCTTATTAttagaatt tttatttatttatttttgcacttaaaatattaaaagatatctTTCGTCAC AACAGAAAGTAAAAAGATGTACTAGTCAGAGTTTTCGTACTACTGCACTT ATGTATATACACatgtacaaataaaatgaacctaatttgaaattctcttc attcaaaaagctgaaaaattttataaaatgagATAATCGGTGCAATAAAA ATTGATGTATGTATATGTATAAAAGggtaataaaaaataatgtatGAAAA AGACCACATTTGGATATTAATTCCTAACATTTATTAATTtggcatagcga aagtattacgatagcctttcgcggtggTCGTCGGTGtggaataaaatttt gaaaacgaaagtgcctgACCACGGTGGCCACGGTGTTAGAAACTTCTCGA ATATTCTAATAAAATTCTAAAGATGGACTAACTCGCTAAGATAAAATTTC GCATTTTGTTTCATAATTTCAGTCCGCAAGTGCTAGGTAGACGTAACCAA GCATTTGTAAACATTGCTCATTTTTAACAAATGGCGTATTCAGCATGCTG TCAGGTTTTATGCTTTGGttgtttgtatttttatcatgtttttggtcttt ttagagtgctttaaagaggtttatatttcttttagcgtagtattttatgt ttgtgtagttagtaaatgcaccaataaagtgaTAGGAATCTTATAATTAA AGAATTGCTCTTGAACATCACTACACATAAACAACAACACAGACAGCAGG TATGATCTTATGTTTACAGATTATCATTTACTAAGTATTTCACAGAGGAA TTTATGGCAAGGGGTGTCAATCTATATAATTTATAGAAGTTCTATGCTGT TCTATATAGTTCTATGTGGCAGGTAGTGGTGCAATGTGTCAGTTCCAGAC TTTTCCACgcaatacaatcaataactttttccAATCGATGAGTAATCGCT AACCAACCGATTGATTGGATATCGATTGATTTTGATAATCAATAGGTAAT CAATCAAGACAATTCTAAAGTCTTGAGTATAGATTGattgtagatttttt tcattggctgttCTGGGCTGTCGATTGTGATCAATCGAACATCTTTTAAG TCAATCGATGGAAAATCAATCAATCTATTGCCAATCGCGCTTCCCTTAAA ATCTGgatttatcaattattttaaaatctATTGATATGCAATCTATCGAT TACCaagcggtaactctgatcacgatatcacgcaatttttgtcttcaata acgatcacgcaaatcagcaaaaaaatggacaatcacgcatccctttgaaa aagtccaaatcacatAGCACGGCTCAAAAACCTTTTAAATCAcaatcacg ttttgacctctcatcacgcaatcacgaaggAAAAATTCCAATAGTTAGTC CCGTTCTATTTATTGCATTCTATTAATGGTGAGGGTGGGTAGTAACTTAG GCATAACTAGGTGTCAGGTGTGTGCTGATGCTAAAATTCTGGTTTTGACC TTCCCAAGTCTCTGAATTATTTAAGGTACTGTacgaaaaacttaaaaagt cgAAAATGAAAATGTGCTTTATTTAAGAGTCACTTTTTTTGCcttgtctc tctaagggtagctTTATTCTCTGTTAGGGCCAGTTTTCTCAGGTCTGACC TGATATTCTCCAACCCTAGTACTCCCCGGTCgtttaatatgattatttta tcTACGAATAATCGAGCactatgcgaaattttcgactctgagtcgtcttg ttaaaattaattcaagttCTGAAGTCATAATATGATATCCCTCTTTCAGG CACAAATTGCATTGTTTTgagggtgtcccagaaaaaaatccccttctttg aagtgaattttctcaaGTTTTTGAAGTTATAAAGAAGCAGTCCTTTTGAA TTGGAAATATAGGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002418XLOC_002418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004338-exon-sc0000041-1491911889:526644..530260TCONS_00004338-exon-sc0000041-1491911889:526644..530260Clytia hemisphaericaexon
TCONS_00004338-exon-sc0000041-1510915933:526644..530260TCONS_00004338-exon-sc0000041-1510915933:526644..530260Clytia hemisphaericaexon
TCONS_00004338-exon-sc0000041-1575043694:526644..530260TCONS_00004338-exon-sc0000041-1575043694:526644..530260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:526644..530260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4121 1.30539 1.83198 1.81321 1.06566 0.860131 0.625601 0.89532 0.939269 0.943631 0.894673 1.13159 0.850884 0.651403 0.848092 0.968597 0.695865 1.00198 0.865399 1.05397 1.17864 1.34696 0.426771 0.76574 0.424146 0.833488 1.33995 0.864232 0.888886 1.12761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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