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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004153 ID=TCONS_00004153|Name=TCONS_00004153|organism=Clytia hemisphaerica|type=transcript|length=594bp AAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCTT CTTGGTTGCACTCAATAGTGCTGAAGTTTCCTATGAAAACGTTCAAGAAG GAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGAGATCCAAATGTGGC GGTAAATATCGCCATTGTGTGAAAACTGGAAAATCTTTCCCAAATATTTC ATACTTGTGTCAATATAAACAACCATGCATGAAATGTCGATGCAACAAAT GCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAAACTTCACTCGATGC TCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAAGGAAAGAAGAAATG TTACAGATACTTCGCATGTAGACTATGCCCACGAGTTGGTAGAAAATGCA ACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAATGCCAAAACAGAAG AAGAATTAAATCAATGGATGGTAACGAATTacactttactttttttaaat tttgtaaatgGCGATTATAAATTATTTAGtttagaaaatttatttttgtt ccaattATGATAATTACATGTTCTTGATATGAGTTAAAACTATC Run BLAST on NCBI protein sequence of TCONS_00004153-protein >TCONS_00004153-protein ID=TCONS_00004153-protein|Name=TCONS_00004153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
KRGRKMKCLAAFLLLAFLVALNSAEVSYENVQEGALEDPANKCRLRSKCG GKYRHCVKTGKSFPNISYLCQYKQPCMKCRCNKCGKPVLRVTCPQNFTRC SRFARRSCKVVKGKKKCYRYFACRLCPRVGRKCNKVLKCKRAKLRMPKQK KN Run BLAST on NCBI transcript from alignment at sc0000039:801762..802919- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004153 ID=TCONS_00004153|Name=TCONS_00004153|organism=Clytia hemisphaerica|type=transcript|length=1158bp|location=Sequence derived from alignment at sc0000039:801762..802919- (Clytia hemisphaerica) AAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCTT
CTTGGTTGCACTCAATAGTAAGTACTTGTACTAAATTAATGTTGTCTTTT
TCTTTCAACGTATCTTAATTTTTTAACTTTGATGTATCTGGAAACGCTAA
AAGTTTTTTCTTCTTTTTCGTTTCTCCGAGAGAAATTTGTGAGATGTTTT
TAAAATTTCTCAATGAATTTGATTTTTTAAAATTTCTCAATGAATTTGAT
TTTTTGAAATTTTCATATTGAATTATGAGATAGCAGCACTTTCATTGTCA
TCTTCAATCTATTTTTTAGGTGCTGAAGTTTCCTATGAAAACGTTCAAGG
TAAGGTTTTGTTTTTCTTATCATTCTATTTTCTAAGGAATCTTTTTGAAG
TGTAAGGTTGAAATTCTCCCACTGTCTTTTTGATCAGGCTGACGTACATT
AGTATAATGTTTAACTTGGGTTGTGGTGTTTATTCTCTGTCTTTATTTTT
CGGGTGATGTATTCAACGAATAGGAATGTGCGACGAGTCTTTGAGATATT
TAGTTTCCATGTGGTTGATATTTTCGATTGTCCCATGAAATTCAAAGGAT
TACAAGGAATCCAGGCCATATCTTCTAACGATAATTAGTTGAATTTCTCT
TTTGTTTACAGAAGGAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGA
GATCCAAATGTGGCGGTAAATATCGCCATTGTGTGAAAACTGGAAAATCT
TTCCCAAATATTTCATACTTGTGTCAATATAAACAACCATGCATGAAATG
TCGATGCAACAAATGCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAA
ACTTCACTCGATGCTCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAA
GGAAAGAAGAAATGTTACAGATACTTCGCATGTAGACTATGCCCACGAGT
TGGTAGAAAATGCAACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAA
TGCCAAAACAGAAGAAGAATTAAATCAATGGATGGTAACGAATTACACTT
TACTTTTTTTAAATTTTGTAAATGGCGATTATAAATTATTTAGTTTAGAA
AATTTATTTTTGTTCCAATTATGATAATTACATGTTCTTGATATGAGTTA
AAACTATC Coding sequence (CDS) from alignment at sc0000039:801762..802919- >TCONS_00004153 ID=TCONS_00004153|Name=TCONS_00004153|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at sc0000039:801762..802919- (Clytia hemisphaerica) AAGGAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGAGATCCAAATGT GGCGGTAAATATCGCCATTGTGTGAAAACTGGAAAATCTTTCCCAAATAT TTCATACTTGTGTCAATATAAACAACCATGCATGAAATGTCGATGCAACA AATGCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAAACTTCACTCGA TGCTCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAAGGAAAGAAGAA ATGTTACAGATACTTCGCATGTAGACTATGCCCACGAGTTGGTAGAAAAT GCAACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAATGCCAAAACAG AAGAAGAATTAAGTGCTGAAGTTTCCTATGAAAACGTTCAAGAAAAGAGG ACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCTTCTTGGTTG CACTCAATAAAGGAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGAGA TCCAAATGTGGCGGTAAATATCGCCATTGTGTGAAAACTGGAAAATCTTT CCCAAATATTTCATACTTGTGTCAATATAAACAACCATGCATGAAATGTC GATGCAACAAATGCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAAAC TTCACTCGATGCTCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAAGG AAAGAAGAAATGTTACAGATACTTCGCATGTAGACTATGCCCACGAGTTG GTAGAAAATGCAACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAATG CCAAAACAGAAGAAGAATTAAGTGCTGAAGTTTCCTATGAAAACGTTCAA GAAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCT TCTTGGTTGCACTCAATAAAGGAGCCCTTGAAGACCCCGCAAATAAATGC AGATTGAGATCCAAATGTGGCGGTAAATATCGCCATTGTGTGAAAACTGG AAAATCTTTCCCAAATATTTCATACTTGTGTCAATATAAACAACCATGCA TGAAATGTCGATGCAACAAATGCGGGAAACCAGTTTTAAGAGTGACATGT CCACAAAACTTCACTCGATGCTCACGATTCGCCCGAAGATCATGCAAAGT TGTCAAAGGAAAGAAGAAATGTTACAGATACTTCGCATGTAGACTATGCC CACGAGTTGGTAGAAAATGCAACAAAGTATTGAAATGTAAACGAGCCAAA TTGAGAATGCCAAAACAGAAGAAGAATTAAGTGCTGAAGTTTCCTATGAA AACGTTCAAGAAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTAT TACTCGCCTTCTTGGTTGCACTCAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004153-exon-sc0000039-1575043694:802853..802919 | TCONS_00004153-exon-sc0000039-1575043694:802853..802919 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1575043694:802571..802600 | TCONS_00004153-exon-sc0000039-1575043694:802571..802600 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1575043694:801762..802258 | TCONS_00004153-exon-sc0000039-1575043694:801762..802258 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1510915933:802853..802919 | TCONS_00004153-exon-sc0000039-1510915933:802853..802919 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1510915933:802571..802600 | TCONS_00004153-exon-sc0000039-1510915933:802571..802600 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1510915933:801762..802258 | TCONS_00004153-exon-sc0000039-1510915933:801762..802258 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1491911889:802853..802919 | TCONS_00004153-exon-sc0000039-1491911889:802853..802919 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1491911889:802571..802600 | TCONS_00004153-exon-sc0000039-1491911889:802571..802600 | Clytia hemisphaerica | exon |
TCONS_00004153-exon-sc0000039-1491911889:801762..802258 | TCONS_00004153-exon-sc0000039-1491911889:801762..802258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000039 | supercontig | sc0000039:801762..802919 - |
Blast
The following BLAST results are available for this feature:
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