TCONS_00004153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004153
Unique NameTCONS_00004153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004153 ID=TCONS_00004153|Name=TCONS_00004153|organism=Clytia hemisphaerica|type=transcript|length=594bp
AAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCTT
CTTGGTTGCACTCAATAGTGCTGAAGTTTCCTATGAAAACGTTCAAGAAG
GAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGAGATCCAAATGTGGC
GGTAAATATCGCCATTGTGTGAAAACTGGAAAATCTTTCCCAAATATTTC
ATACTTGTGTCAATATAAACAACCATGCATGAAATGTCGATGCAACAAAT
GCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAAACTTCACTCGATGC
TCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAAGGAAAGAAGAAATG
TTACAGATACTTCGCATGTAGACTATGCCCACGAGTTGGTAGAAAATGCA
ACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAATGCCAAAACAGAAG
AAGAATTAAATCAATGGATGGTAACGAATTacactttactttttttaaat
tttgtaaatgGCGATTATAAATTATTTAGtttagaaaatttatttttgtt
ccaattATGATAATTACATGTTCTTGATATGAGTTAAAACTATC
Run BLAST on NCBI

protein sequence of TCONS_00004153-protein

>TCONS_00004153-protein ID=TCONS_00004153-protein|Name=TCONS_00004153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
KRGRKMKCLAAFLLLAFLVALNSAEVSYENVQEGALEDPANKCRLRSKCG
GKYRHCVKTGKSFPNISYLCQYKQPCMKCRCNKCGKPVLRVTCPQNFTRC
SRFARRSCKVVKGKKKCYRYFACRLCPRVGRKCNKVLKCKRAKLRMPKQK
KN
Run BLAST on NCBI

transcript from alignment at sc0000039:801762..802919-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004153 ID=TCONS_00004153|Name=TCONS_00004153|organism=Clytia hemisphaerica|type=transcript|length=1158bp|location=Sequence derived from alignment at sc0000039:801762..802919- (Clytia hemisphaerica)
AAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCTT
CTTGGTTGCACTCAATAGTAAGTACTTGTACTAAATTAATGTTGTCTTTT
TCTTTCAACGTATCTTAATTTTTTAACTTTGATGTATCTGGAAACGCTAA
AAGTTTTTTCTTCTTTTTCGTTTCTCCGAGAGAAATTTGTGAGATGTTTT
TAAAATTTCTCAATGAATTTGATTTTTTAAAATTTCTCAATGAATTTGAT
TTTTTGAAATTTTCATATTGAATTATGAGATAGCAGCACTTTCATTGTCA
TCTTCAATCTATTTTTTAGGTGCTGAAGTTTCCTATGAAAACGTTCAAGG
TAAGGTTTTGTTTTTCTTATCATTCTATTTTCTAAGGAATCTTTTTGAAG
TGTAAGGTTGAAATTCTCCCACTGTCTTTTTGATCAGGCTGACGTACATT
AGTATAATGTTTAACTTGGGTTGTGGTGTTTATTCTCTGTCTTTATTTTT
CGGGTGATGTATTCAACGAATAGGAATGTGCGACGAGTCTTTGAGATATT
TAGTTTCCATGTGGTTGATATTTTCGATTGTCCCATGAAATTCAAAGGAT
TACAAGGAATCCAGGCCATATCTTCTAACGATAATTAGTTGAATTTCTCT
TTTGTTTACAGAAGGAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGA
GATCCAAATGTGGCGGTAAATATCGCCATTGTGTGAAAACTGGAAAATCT
TTCCCAAATATTTCATACTTGTGTCAATATAAACAACCATGCATGAAATG
TCGATGCAACAAATGCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAA
ACTTCACTCGATGCTCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAA
GGAAAGAAGAAATGTTACAGATACTTCGCATGTAGACTATGCCCACGAGT
TGGTAGAAAATGCAACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAA
TGCCAAAACAGAAGAAGAATTAAATCAATGGATGGTAACGAATTACACTT
TACTTTTTTTAAATTTTGTAAATGGCGATTATAAATTATTTAGTTTAGAA
AATTTATTTTTGTTCCAATTATGATAATTACATGTTCTTGATATGAGTTA
AAACTATC

Coding sequence (CDS) from alignment at sc0000039:801762..802919-

>TCONS_00004153 ID=TCONS_00004153|Name=TCONS_00004153|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at sc0000039:801762..802919- (Clytia hemisphaerica)
AAGGAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGAGATCCAAATGT
GGCGGTAAATATCGCCATTGTGTGAAAACTGGAAAATCTTTCCCAAATAT
TTCATACTTGTGTCAATATAAACAACCATGCATGAAATGTCGATGCAACA
AATGCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAAACTTCACTCGA
TGCTCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAAGGAAAGAAGAA
ATGTTACAGATACTTCGCATGTAGACTATGCCCACGAGTTGGTAGAAAAT
GCAACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAATGCCAAAACAG
AAGAAGAATTAAGTGCTGAAGTTTCCTATGAAAACGTTCAAGAAAAGAGG
ACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCTTCTTGGTTG
CACTCAATAAAGGAGCCCTTGAAGACCCCGCAAATAAATGCAGATTGAGA
TCCAAATGTGGCGGTAAATATCGCCATTGTGTGAAAACTGGAAAATCTTT
CCCAAATATTTCATACTTGTGTCAATATAAACAACCATGCATGAAATGTC
GATGCAACAAATGCGGGAAACCAGTTTTAAGAGTGACATGTCCACAAAAC
TTCACTCGATGCTCACGATTCGCCCGAAGATCATGCAAAGTTGTCAAAGG
AAAGAAGAAATGTTACAGATACTTCGCATGTAGACTATGCCCACGAGTTG
GTAGAAAATGCAACAAAGTATTGAAATGTAAACGAGCCAAATTGAGAATG
CCAAAACAGAAGAAGAATTAAGTGCTGAAGTTTCCTATGAAAACGTTCAA
GAAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTATTACTCGCCT
TCTTGGTTGCACTCAATAAAGGAGCCCTTGAAGACCCCGCAAATAAATGC
AGATTGAGATCCAAATGTGGCGGTAAATATCGCCATTGTGTGAAAACTGG
AAAATCTTTCCCAAATATTTCATACTTGTGTCAATATAAACAACCATGCA
TGAAATGTCGATGCAACAAATGCGGGAAACCAGTTTTAAGAGTGACATGT
CCACAAAACTTCACTCGATGCTCACGATTCGCCCGAAGATCATGCAAAGT
TGTCAAAGGAAAGAAGAAATGTTACAGATACTTCGCATGTAGACTATGCC
CACGAGTTGGTAGAAAATGCAACAAAGTATTGAAATGTAAACGAGCCAAA
TTGAGAATGCCAAAACAGAAGAAGAATTAAGTGCTGAAGTTTCCTATGAA
AACGTTCAAGAAAAGAGGACGCAAGATGAAGTGTTTAGCAGCTTTCTTAT
TACTCGCCTTCTTGGTTGCACTCAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002305XLOC_002305Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004153-proteinTCONS_00004153-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004153-exon-sc0000039-1575043694:802853..802919TCONS_00004153-exon-sc0000039-1575043694:802853..802919Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1575043694:802571..802600TCONS_00004153-exon-sc0000039-1575043694:802571..802600Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1575043694:801762..802258TCONS_00004153-exon-sc0000039-1575043694:801762..802258Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1510915933:802853..802919TCONS_00004153-exon-sc0000039-1510915933:802853..802919Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1510915933:802571..802600TCONS_00004153-exon-sc0000039-1510915933:802571..802600Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1510915933:801762..802258TCONS_00004153-exon-sc0000039-1510915933:801762..802258Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1491911889:802853..802919TCONS_00004153-exon-sc0000039-1491911889:802853..802919Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1491911889:802571..802600TCONS_00004153-exon-sc0000039-1491911889:802571..802600Clytia hemisphaericaexon
TCONS_00004153-exon-sc0000039-1491911889:801762..802258TCONS_00004153-exon-sc0000039-1491911889:801762..802258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:801762..802919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1843	0.0898607	0.104337	0.102077	1.36696	0.294598	311.822	314.439	1620.46	548.836	1509.73	2084.91	204.45	217.543	742.189	658.457	23.3125	24.5327	35.6565	22.5512	0	0	0.211315	0.384231	0	5.29795	0.126356	0.13485	0	0.104206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top