TCONS_00004131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004131
Unique NameTCONS_00004131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004131 ID=TCONS_00004131|Name=TCONS_00004131|organism=Clytia hemisphaerica|type=transcript|length=3103bp
GACTTGGAACACATATTTGGCATAAATGTCTCTTTATTGAAAGagAGTAT
GGCAACAAAAATTGCTTTTAACTCAGACGATAAAATAGTCGATCAAAATG
CATGTGTGGAACAAATCAATGTCAAAGatctggaaaaatattttgatgta
gACAAAATTgtgcaatatattttacaagGAAAATATTCGGTTATTGCATT
GCAGTTTCCAGATGAATTGATGACTTACTCAACTTCTATTGCATCTGAAT
TAAAATCTAAAACAGAAGCTCAAATATTTGTTTTAGCTGACACATCTTAC
GGAAGTTGTTGCGTTGATGAAGTTGCTGCAAGTCattacaatgctgactt
aaTAATCCATTTTGGACAAAGCTGCCTATCTAATACAGGAAAAATTGCTG
TTTATTATTCTTTTGGAAAAgaattgattgacattgatgtgctTCTGTCA
AAATTAGGAGAAAGATTCACACCAGACGACAAAATATTGGTTCTATACGA
TGTTCAATATGATTATCCTATTAACTCTAACCTGGATGTTGTtaagaaaa
actttcagaatGCTTCAATCTCGTGTTTGAATTTGTGCAACTCAAGTGAG
ATTGCTGATAATGTTACCATCAAATTTGGTCGTGTATACACCTTGACACA
CTCTATTGAGGAATACACCTTAGTTTTTATTGGATCAAATGAAAGAACAT
TATATAACACAATCGTCTCTTATCCTCGAAATACTGTTTACAGTTATGAT
GTAAAACTTGAAAAACTGCAAAAAGAGGATTTAAACGTGAACAAGTATTT
AATGCGAAGAttttatttgattgaaaaagCCAAGGATGCACAGATAGTTG
GCATTGTCATGGGTACTCTTGGAGTTGCCAGATACAATGATATGGTCAAC
AGGTTGAAATCCATTTTAAAACAATCTGGAAAGaaattttacacctttat
tattGGAAAGATAAACCCTGCTAAATTAGCAAATTTCATGGAAATTGATA
TGTTTGTGCTGGTAGCTTGTCCAGAAAACAGTTTATTAGATTCGAAAGAG
TTTTATAAACCTATCATCACGCCATATGAAATGGAGATGGCTTGTTTATC
TGGACGTTCTTGGTCTGGTGATGTTGTGACTGATTTTCGAGAATTACTTT
CGGGATCAAAACGATTTGTTGAACTTGACGGAGAAAATGAcggaaaagat
aaaaaaccaGAATATTCTCTCATTACTGGGAAACTTCGAAATAATAACAC
CATGTCAGAGCCGTTATGTACTGATGTTGCAACACGTAATGAATCGAACA
GTCTAGTTGCGTCTTCTGCAAGAAATGCAAGTGAATATTTAGCATCAAGA
ACATGGCAGGGACTTCAAATCGACTCTGGTAAAACTGAAGTTAAACTTGC
TGTTGAAGGACGATCTGGAATAGCGATGAAttataaaaacgaaaaagagT
AGATTTGGCCTTGAAGAAATTGTAAACAATTTTTATACTGAAATGAATAA
TAATGATCGAATAATTATGTATGCTTTTCTGTTTGTTATTGTAGTCTCTT
CCACAATCCGTTGCTTCCACATTGTATTTTGATAATAGAAACCTTTCGGG
AAAACCATACTTTGCAATACTTTGAAAGAGCCTTCGATTTCAACGATAAC
CTTGCTATTGATGTTTAAAAGAGAAGTTACATCTTGAACATTGCTTAAAT
ATTCTTCGTTTTCGTTTTTCAGCtcaatataataataatatgagAAAGGC
GCAATCTCAAACCGATCTAGTATCGGACAAAAAGAAGATCGACCATGAAG
TTAAACAAGTGCAAAAACAGATCGCCCTTGCTGAGAAAACCAATGCTAAT
TTATTAAAAGACTTCACCAATATTGTTGTTGACCTCAATCGATTGTTGTC
AAGGCAGCACGAGCTatgtttgaattttgaaagcTTGGCACGGGAAGAGT
CGCCAGTTCTTGAGAACAGTATCAGCCAAGTATACACTTCTCTGAACACA
CTTCAAATGTCTCTCAAGTTGCACATTGATATTGTACAAGAAAAAATTGT
GAAACGGATAAGTGAAGAAACTAAGAGTTGTCGCGACGCCAGGCAAAAGC
TTGCACAATGCTCAGACGTCAAAAAGCAGCGTACATCAGCTGCTAAAATC
CTTCAGAAATCGAAGAAGTTGAACGAAAAAGAACGTACCAAACAGACGAA
CGTGTTATTACAAACCACGAAACAGTTGAACGAGTTAACCACTCAAATGG
AGATCTTTGAACGTGACAAAATAGAGAGGATGAAGCGGAATTTGAAAACG
TATATTCATAGTTGTTTAGCGTACCATGTAAAAGCTGTGGAGAATTATAC
CAAAGCCTACCAAGCTGTTTCTAGCATCGATGTGGAAAAACATGTTGAAC
ATTTCACTAATAATTTGTTGTATCCTGAAAAGGAAGAACGTGCAAAATTT
GTTCGATGGAATTCCTTTAGCTCTGTAGCCTAACAAATCATTTGATTCAG
TCTTAGGTCTTGGAGCTCTTTATTTTCCCGTTCTCAGTCACTAAGGCGTT
TGTTTCTAAATATTTAAGGGGGGGTTAGAATATCGTAGGATAAATTGAGC
GTGTTCGGGAATACATGTTATTTTAAGAGGTATGaaccccctaggtttat
tttaTCCTCcttatatacccatcccccttCCTTAGTGAAATCCCATCCcc
ctttttttacagaaaatctgttttgaagaaaacttgCTCTAAGCTCCTAA
AGTATGATCAAAGAGTACAAAATGTAAACAGTCACGTGTGCAACAATTTC
ACAATATAACTAGGGTGTTTATTAACatgattttgtgttttggtgGTATA
TGTTTTTACTTCGAAACAGACTGTAACCATTTGTATATGATTaaattgat
aaaatttctaACCCACCTTTCTTATTTGATCCCCCcagttttttgacaaa
tcttgATACCCCCTATccaaaaaaaatacataaattgGCACCCTCTCTAT
TTAAAAGGGGTTGCAAACTATGAGGAGGCTTATATCATGAGCAAAATACT
AAGAAACCTTCAAATCAACTTGGAAAACATTAGAAGTCTTTTGTGAAATT
CAA
Run BLAST on NCBI

protein sequence of TCONS_00004131-protein

>TCONS_00004131-protein ID=TCONS_00004131-protein|Name=TCONS_00004131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
DLEHIFGINVSLLKESMATKIAFNSDDKIVDQNACVEQINVKDLEKYFDV
DKIVQYILQGKYSVIALQFPDELMTYSTSIASELKSKTEAQIFVLADTSY
GSCCVDEVAASHYNADLIIHFGQSCLSNTGKIAVYYSFGKELIDIDVLLS
KLGERFTPDDKILVLYDVQYDYPINSNLDVVKKNFQNASISCLNLCNSSE
IADNVTIKFGRVYTLTHSIEEYTLVFIGSNERTLYNTIVSYPRNTVYSYD
VKLEKLQKEDLNVNKYLMRRFYLIEKAKDAQIVGIVMGTLGVARYNDMVN
RLKSILKQSGKKFYTFIIGKINPAKLANFMEIDMFVLVACPENSLLDSKE
FYKPIITPYEMEMACLSGRSWSGDVVTDFRELLSGSKRFVELDGENDGKD
KKPEYSLITGKLRNNNTMSEPLCTDVATRNESNSLVASSARNASEYLASR
TWQGLQIDSGKTEVKLAVEGRSGIAMNYKNEKE
Run BLAST on NCBI

transcript from alignment at sc0000039:467181..470769-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004131 ID=TCONS_00004131|Name=TCONS_00004131|organism=Clytia hemisphaerica|type=transcript|length=3589bp|location=Sequence derived from alignment at sc0000039:467181..470769- (Clytia hemisphaerica)
GACTTGGAACACATATTTGGCATAAATGTCTCTTTATTGAAAGGTACCAA AAGTTGCCTAAAGTTATTTTTGTGTGTCCTGGAAAAAGTCCTTCTTTTAT TCCTTATGTATGTCTGTGATTTTAGTATTGAGCCCCTTATCTTACCAGGG ACTTCATCTCCTTGGCAACAGGTTTTCTTTTAAAATACTTTCATTAAAGG GACATAACAGTACTTGCGAAATTTGTAAACAAACTGTATGCAGCGGATAC AAAATCAAAACAAATGTCACATGTCAAAATAAAAAATCAAACCAAANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNGCTAATTTTTATTGTTCAATTGTT TTACAAGTTTGTTTTGGACACGTGATTTTCATTGTTCTCTTTAATGACAC GTGGTTCGCGCAATGTTTACATTTTTACTACTGTAATGTCCCTTTAATAG TCTTTCAAGGAAGGAATTGTTTCATTGTTTTTCATTATGAAATTGCTCAT TCCAGGTTCTTATTCTTCTTCTTTTTTAGAGAGTATGGCAACAAAAATTG CTTTTAACTCAGACGATAAAATAGTCGATCAAAATGCATGTGTGGAACAA ATCAATGTCAAAGATCTGGAAAAATATTTTGATGTAGACAAAATTGTGCA ATATATTTTACAAGGAAAATATTCGGTTATTGCATTGCAGTTTCCAGATG AATTGATGACTTACTCAACTTCTATTGCATCTGAATTAAAATCTAAAACA GAAGCTCAAATATTTGTTTTAGCTGACACATCTTACGGAAGTTGTTGCGT TGATGAAGTTGCTGCAAGTCATTACAATGCTGACTTAATAATCCATTTTG GACAAAGCTGCCTATCTAATACAGGAAAAATTGCTGTTTATTATTCTTTT GGAAAAGAATTGATTGACATTGATGTGCTTCTGTCAAAATTAGGAGAAAG ATTCACACCAGACGACAAAATATTGGTTCTATACGATGTTCAATATGATT ATCCTATTAACTCTAACCTGGATGTTGTTAAGAAAAACTTTCAGAATGCT TCAATCTCGTGTTTGAATTTGTGCAACTCAAGTGAGATTGCTGATAATGT TACCATCAAATTTGGTCGTGTATACACCTTGACACACTCTATTGAGGAAT ACACCTTAGTTTTTATTGGATCAAATGAAAGAACATTATATAACACAATC GTCTCTTATCCTCGAAATACTGTTTACAGTTATGATGTAAAACTTGAAAA ACTGCAAAAAGAGGATTTAAACGTGAACAAGTATTTAATGCGAAGATTTT ATTTGATTGAAAAAGCCAAGGATGCACAGATAGTTGGCATTGTCATGGGT ACTCTTGGAGTTGCCAGATACAATGATATGGTCAACAGGTTGAAATCCAT TTTAAAACAATCTGGAAAGAAATTTTACACCTTTATTATTGGAAAGATAA ACCCTGCTAAATTAGCAAATTTCATGGAAATTGATATGTTTGTGCTGGTA GCTTGTCCAGAAAACAGTTTATTAGATTCGAAAGAGTTTTATAAACCTAT CATCACGCCATATGAAATGGAGATGGCTTGTTTATCTGGACGTTCTTGGT CTGGTGATGTTGTGACTGATTTTCGAGAATTACTTTCGGGATCAAAACGA TTTGTTGAACTTGACGGAGAAAATGACGGAAAAGATAAAAAACCAGAATA TTCTCTCATTACTGGGAAACTTCGAAATAATAACACCATGTCAGAGCCGT TATGTACTGATGTTGCAACACGTAATGAATCGAACAGTCTAGTTGCGTCT TCTGCAAGAAATGCAAGTGAATATTTAGCATCAAGAACATGGCAGGGACT TCAAATCGACTCTGGTAAAACTGAAGTTAAACTTGCTGTTGAAGGACGAT CTGGAATAGCGATGAATTATAAAAACGAAAAAGAGTAGATTTGGCCTTGA AGAAATTGTAAACAATTTTTATACTGAAATGAATAATAATGATCGAATAA TTATGTATGCTTTTCTGTTTGTTATTGTAGTCTCTTCCACAATCCGTTGC TTCCACATTGTATTTTGATAATAGAAACCTTTCGGGAAAACCATACTTTG CAATACTTTGAAAGAGCCTTCGATTTCAACGATAACCTTGCTATTGATGT TTAAAAGAGAAGTTACATCTTGAACATTGCTTAAATATTCTTCGTTTTCG TTTTTCAGCTCAATATAATAATAATATGAGAAAGGCGCAATCTCAAACCG ATCTAGTATCGGACAAAAAGAAGATCGACCATGAAGTTAAACAAGTGCAA AAACAGATCGCCCTTGCTGAGAAAACCAATGCTAATTTATTAAAAGACTT CACCAATATTGTTGTTGACCTCAATCGATTGTTGTCAAGGCAGCACGAGC TATGTTTGAATTTTGAAAGCTTGGCACGGGAAGAGTCGCCAGTTCTTGAG AACAGTATCAGCCAAGTATACACTTCTCTGAACACACTTCAAATGTCTCT CAAGTTGCACATTGATATTGTACAAGAAAAAATTGTGAAACGGATAAGTG AAGAAACTAAGAGTTGTCGCGACGCCAGGCAAAAGCTTGCACAATGCTCA GACGTCAAAAAGCAGCGTACATCAGCTGCTAAAATCCTTCAGAAATCGAA GAAGTTGAACGAAAAAGAACGTACCAAACAGACGAACGTGTTATTACAAA CCACGAAACAGTTGAACGAGTTAACCACTCAAATGGAGATCTTTGAACGT GACAAAATAGAGAGGATGAAGCGGAATTTGAAAACGTATATTCATAGTTG TTTAGCGTACCATGTAAAAGCTGTGGAGAATTATACCAAAGCCTACCAAG CTGTTTCTAGCATCGATGTGGAAAAACATGTTGAACATTTCACTAATAAT TTGTTGTATCCTGAAAAGGAAGAACGTGCAAAATTTGTTCGATGGAATTC CTTTAGCTCTGTAGCCTAACAAATCATTTGATTCAGTCTTAGGTCTTGGA GCTCTTTATTTTCCCGTTCTCAGTCACTAAGGCGTTTGTTTCTAAATATT TAAGGGGGGGTTAGAATATCGTAGGATAAATTGAGCGTGTTCGGGAATAC ATGTTATTTTAAGAGGTATGAACCCCCTAGGTTTATTTTATCCTCCTTAT ATACCCATCCCCCTTCCTTAGTGAAATCCCATCCCCCTTTTTTTACAGAA AATCTGTTTTGAAGAAAACTTGCTCTAAGCTCCTAAAGTATGATCAAAGA GTACAAAATGTAAACAGTCACGTGTGCAACAATTTCACAATATAACTAGG GTGTTTATTAACATGATTTTGTGTTTTGGTGGTATATGTTTTTACTTCGA AACAGACTGTAACCATTTGTATATGATTAAATTGATAAAATTTCTAACCC ACCTTTCTTATTTGATCCCCCCAGTTTTTTGACAAATCTTGATACCCCCT ATCCAAAAAAAATACATAAATTGGCACCCTCTCTATTTAAAAGGGGTTGC AAACTATGAGGAGGCTTATATCATGAGCAAAATACTAAGAAACCTTCAAA TCAACTTGGAAAACATTAGAAGTCTTTTGTGAAATTCAA

Coding sequence (CDS) from alignment at sc0000039:467181..470769-

>TCONS_00004131 ID=TCONS_00004131|Name=TCONS_00004131|organism=Clytia hemisphaerica|type=CDS|length=2904bp|location=Sequence derived from alignment at sc0000039:467181..470769- (Clytia hemisphaerica)
AGAGTATGGCAACAAAAATTGCTTTTAACTCAGACGATAAAATAGTCGAT
CAAAATGCATGTGTGGAACAAATCAATGTCAAAGATCTGGAAAAATATTT
TGATGTAGACAAAATTGTGCAATATATTTTACAAGGAAAATATTCGGTTA
TTGCATTGCAGTTTCCAGATGAATTGATGACTTACTCAACTTCTATTGCA
TCTGAATTAAAATCTAAAACAGAAGCTCAAATATTTGTTTTAGCTGACAC
ATCTTACGGAAGTTGTTGCGTTGATGAAGTTGCTGCAAGTCATTACAATG
CTGACTTAATAATCCATTTTGGACAAAGCTGCCTATCTAATACAGGAAAA
ATTGCTGTTTATTATTCTTTTGGAAAAGAATTGATTGACATTGATGTGCT
TCTGTCAAAATTAGGAGAAAGATTCACACCAGACGACAAAATATTGGTTC
TATACGATGTTCAATATGATTATCCTATTAACTCTAACCTGGATGTTGTT
AAGAAAAACTTTCAGAATGCTTCAATCTCGTGTTTGAATTTGTGCAACTC
AAGTGAGATTGCTGATAATGTTACCATCAAATTTGGTCGTGTATACACCT
TGACACACTCTATTGAGGAATACACCTTAGTTTTTATTGGATCAAATGAA
AGAACATTATATAACACAATCGTCTCTTATCCTCGAAATACTGTTTACAG
TTATGATGTAAAACTTGAAAAACTGCAAAAAGAGGATTTAAACGTGAACA
AGTATTTAATGCGAAGATTTTATTTGATTGAAAAAGCCAAGGATGCACAG
ATAGTTGGCATTGTCATGGGTACTCTTGGAGTTGCCAGATACAATGATAT
GGTCAACAGGTTGAAATCCATTTTAAAACAATCTGGAAAGAAATTTTACA
CCTTTATTATTGGAAAGATAAACCCTGCTAAATTAGCAAATTTCATGGAA
ATTGATATGTTTGTGCTGGTAGCTTGTCCAGAAAACAGTTTATTAGATTC
GAAAGAGTTTTATAAACCTATCATCACGCCATATGAAATGGAGATGGCTT
GTTTATCTGGACGTTCTTGGTCTGGTGATGTTGTGACTGATTTTCGAGAA
TTACTTTCGGGATCAAAACGATTTGTTGAACTTGACGGAGAAAATGACGG
AAAAGATAAAAAACCAGAATATTCTCTCATTACTGGGAAACTTCGAAATA
ATAACACCATGTCAGAGCCGTTATGTACTGATGTTGCAACACGTAATGAA
TCGAACAGTCTAGTTGCGTCTTCTGCAAGAAATGCAAGTGAATATTTAGC
ATCAAGAACATGGCAGGGACTTCAAATCGACTCTGGTAAAACTGAAGTTA
AACTTGCTGTTGAAGGACGATCTGGAATAGCGATGAATTATAAAAACGAA
AAAGAGTAGGACTTGGAACACATATTTGGCATAAATGTCTCTTTATTGAA
AGAGAGTATGGCAACAAAAATTGCTTTTAACTCAGACGATAAAATAGTCG
ATCAAAATGCATGTGTGGAACAAATCAATGTCAAAGATCTGGAAAAATAT
TTTGATGTAGACAAAATTGTGCAATATATTTTACAAGGAAAATATTCGGT
TATTGCATTGCAGTTTCCAGATGAATTGATGACTTACTCAACTTCTATTG
CATCTGAATTAAAATCTAAAACAGAAGCTCAAATATTTGTTTTAGCTGAC
ACATCTTACGGAAGTTGTTGCGTTGATGAAGTTGCTGCAAGTCATTACAA
TGCTGACTTAATAATCCATTTTGGACAAAGCTGCCTATCTAATACAGGAA
AAATTGCTGTTTATTATTCTTTTGGAAAAGAATTGATTGACATTGATGTG
CTTCTGTCAAAATTAGGAGAAAGATTCACACCAGACGACAAAATATTGGT
TCTATACGATGTTCAATATGATTATCCTATTAACTCTAACCTGGATGTTG
TTAAGAAAAACTTTCAGAATGCTTCAATCTCGTGTTTGAATTTGTGCAAC
TCAAGTGAGATTGCTGATAATGTTACCATCAAATTTGGTCGTGTATACAC
CTTGACACACTCTATTGAGGAATACACCTTAGTTTTTATTGGATCAAATG
AAAGAACATTATATAACACAATCGTCTCTTATCCTCGAAATACTGTTTAC
AGTTATGATGTAAAACTTGAAAAACTGCAAAAAGAGGATTTAAACGTGAA
CAAGTATTTAATGCGAAGATTTTATTTGATTGAAAAAGCCAAGGATGCAC
AGATAGTTGGCATTGTCATGGGTACTCTTGGAGTTGCCAGATACAATGAT
ATGGTCAACAGGTTGAAATCCATTTTAAAACAATCTGGAAAGAAATTTTA
CACCTTTATTATTGGAAAGATAAACCCTGCTAAATTAGCAAATTTCATGG
AAATTGATATGTTTGTGCTGGTAGCTTGTCCAGAAAACAGTTTATTAGAT
TCGAAAGAGTTTTATAAACCTATCATCACGCCATATGAAATGGAGATGGC
TTGTTTATCTGGACGTTCTTGGTCTGGTGATGTTGTGACTGATTTTCGAG
AATTACTTTCGGGATCAAAACGATTTGTTGAACTTGACGGAGAAAATGAC
GGAAAAGATAAAAAACCAGAATATTCTCTCATTACTGGGAAACTTCGAAA
TAATAACACCATGTCAGAGCCGTTATGTACTGATGTTGCAACACGTAATG
AATCGAACAGTCTAGTTGCGTCTTCTGCAAGAAATGCAAGTGAATATTTA
GCATCAAGAACATGGCAGGGACTTCAAATCGACTCTGGTAAAACTGAAGT
TAAACTTGCTGTTGAAGGACGATCTGGAATAGCGATGAATTATAAAAACG
AAAAAGAGTAGGACTTGGAACACATATTTGGCATAAATGTCTCTTTATTG
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002298XLOC_002298Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004131-proteinTCONS_00004131-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004131-exon-sc0000039-1575043694:470727..470769TCONS_00004131-exon-sc0000039-1575043694:470727..470769Clytia hemisphaericaexon
TCONS_00004131-exon-sc0000039-1575043694:467181..470240TCONS_00004131-exon-sc0000039-1575043694:467181..470240Clytia hemisphaericaexon
TCONS_00004131-exon-sc0000039-1510915933:470727..470769TCONS_00004131-exon-sc0000039-1510915933:470727..470769Clytia hemisphaericaexon
TCONS_00004131-exon-sc0000039-1510915933:467181..470240TCONS_00004131-exon-sc0000039-1510915933:467181..470240Clytia hemisphaericaexon
TCONS_00004131-exon-sc0000039-1491911889:470727..470769TCONS_00004131-exon-sc0000039-1491911889:470727..470769Clytia hemisphaericaexon
TCONS_00004131-exon-sc0000039-1491911889:467181..470240TCONS_00004131-exon-sc0000039-1491911889:467181..470240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:467181..470769 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.3957 22.0083 12.0216 9.09285 0 0 0 0 0 0.0759557 0.186125 0.102766 0 0.051436 1.43261 2.08416 1.42986 0.807056 0 0 0.50144 0.218011 22.5493 17.3607 2.32674 2.70165 0 0.180179 9.66699 14.4315
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010014DHP2_eu
IPR016435DPH1/DPH2
Vocabulary: Biological Process
TermDefinition
GO:0017183peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine
Blast
BLAST of TCONS_00004131 vs. Swiss-Prot (Human)
Match: DPH2 (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 OS=Homo sapiens GN=DPH2 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 5.838e-66
Identity = 141/471 (29.94%), Postives = 247/471 (52.44%), Query Frame = 1
Query:  118 NVKDLEKYFDVDKIVQYILQGKYSVIALQFPDELMTYSTSIASELKSKTEAQIFVLADTSYGSCCVDEVAASHYNADLIIHFGQSCLSNTGK-IAVYYSFGKELIDIDVLLSKLGERFTPDDK--ILVLYDVQYDYPINSNLDVVKKNFQNASISCLNLCNS--SEIADNVTI-KFGRVYTLTHS--IEEYTLVFIGSNERT--------LYNTIVSY-PRNTVYSYDVKLEKLQKEDLNVNKYLMRRFYLIEKAKDAQIVGIVMGTLGVARYNDMVNRLKSILKQSGKKFYTFIIGKINPAKLANFMEIDMFVLVACPENSLLD--SKEFYKPIITPYEMEMACLSGRSWSG--DVVTDFRELLSGSKRFVELDGENDGKDKKPEYSLITGKLRNNNTMSEPLCTDVATRNESNSLVASS--------ARNASEYLASRTWQGLQIDSGKTEVKLAVEGRSGIAMNYKNE 1443
             + DL+  ++++++  ++       +ALQFPD+L+  + ++A+ L+  T +++F+L DT+YGSCCVD + A    A  +IHFG +CLS   + + V +   +  + ++ L  K  E   PD K  +++L +    + + +   +++  + +  +S         S   + + + +FGR + L     +EEY   ++G ++ +        L   ++ + P     S      K Q E     +   RR YL+E+A+DA++VG++ GTLGVA++ + +  L+++ + +GK+ Y   +G+  PAKLANF E+D+FVL+ACP  +L    S  F++PI+ P E+E AC       G    +T + +LL GS   V L        + P+ SLITG LR              + N+  SL  +         +  A+ +L+SR+WQGL+   G+T V  AV GR GIA+ Y++E
Sbjct:   25 PLPDLDGVYELERVAGFVRDLGCERVALQFPDQLLGDAVAVAARLEETTGSKMFILGDTAYGSCCVDVLGAEQAGAQALIHFGPACLSPPARPLPVAFVLRQRSVALE-LCVKAFEAQNPDPKAPVVLLSEPACAHALEALATLLRPRYLDLLVSSPAFPQPVGSLSPEPMPLERFGRRFPLAPGRRLEEYGAFYVGGSKASPDPDLDPDLSRLLLGWAPGQPFSSCCPDTGKTQDEGARAGRLRARRRYLVERARDARVVGLLAGTLGVAQHREALAHLRNLTQAAGKRSYVLALGRPTPAKLANFPEVDVFVLLACPLGALAPQLSGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYADLLPGSPFHVALPPPESELWETPDVSLITGDLRPPPAWK--------SSNDHGSLALTPRPQLELAESSPAASFLSSRSWQGLEPRLGQTPVTEAVSGRRGIAIAYEDE 486          
The following BLAST results are available for this feature:
BLAST of TCONS_00004131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPH25.838e-6629.942-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
back to top