TCONS_00004121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004121
Unique NameTCONS_00004121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004121 ID=TCONS_00004121|Name=TCONS_00004121|organism=Clytia hemisphaerica|type=transcript|length=1261bp
atcgattgtggtttcaaaatttcccgggggatttcccttttttctcaaat
attacgaccatgattgcagataaaatccgttcatggggggtggaggatga
attgtccaggggtattgaaaaaataccaaaaaattgcaatgtccagaNAC
ATGAATTCCAAGCAGAAACCAGGCAACTTTTGGACATCGTTGCAAGATCC
CTCTATTCTGAAAAAGAGGTCTTCATTCGAGAGATTGTGTCGAATTCATC
GGATGCTCTCGAGAAGCTGCGGCAAGTTCAAGTTACTGGTCAACAAATTT
CTGATTCTGATTCTCCCCTTGAAATCCATCTGACCACTGATGAAGAAAAG
GGCCTGTTCATTATCCAAGATTTTGGTATCGGCATGAGCAAAGATGAGCT
TATCAATAACCTTGGTACGATCGCTCGATCAGGCTCAAAAGCTTTTATTG
AGAAAGCTAAGCACGAGAGCATTGACGCTCAAAACATCATTGGACAATTC
GGTGTGGGATTTTATTCCACCTTTATGGTTGGTGATAAGATTGATGTTTT
TACCAAATCTTATGAGCCAAGTGCTTCTGGATATCATTGGTCATCCGATG
GATCTGGCTCATACGAGATCGCCGAAGCTGAAGGCGTAACACGTGGTACA
AAAGTCATCATCCATTTGAAATCTGATGATCGAAGGTTCTCCCTCAAAAC
TACTGTCGAAGATATCATTCGGCGCTACAGTAACTTTGTCGGATTTCCCA
TTTACTTAAATGGCTCAAGACTCAACAACATTGATGCTTTATGGACGAGC
TCAGAGAGGGATGTCAGCGAAACAGACCATTCCCAATTCTATCAGTTTAT
TTCCAATACGTCAGACGAACCTCGCTATTCGCTCATGTACAAAGCGGACG
CCCCATTGAACATTCGTAGTGTTTTATACGTACCTTCCAATATCCCAGAA
ATGTTCGGTTTCGGGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGAA
GATTTTGATTCAATCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGTT
TCATTCGTGGTGTTGTTGATAGTGAAGACATCCCATTGAACTTGAGTAGA
GAACTCCTTCAAGATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTGT
TACTAAACTACTAAGGTACTTCTTAGAACAATCGcgaaaagatgaagaaa
aattCACGAAATTTATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGTG
GTCACTGACCA
Run BLAST on NCBI

transcript from alignment at sc0000039:394937..398234-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004121 ID=TCONS_00004121|Name=TCONS_00004121|organism=Clytia hemisphaerica|type=transcript|length=3298bp|location=Sequence derived from alignment at sc0000039:394937..398234- (Clytia hemisphaerica)
ATCGATTGTGGTTTCAAAATTTCCCGGGGGATTTCCCTTTTTTCTCAAAT
ATTACGACCATGATTGCAGATAAAATCCGTTCATGGGGGGTGGAGGATGA
ATTGTCCAGGGGTATTGAAAAAATACCAAAAAATTGCAATGTCCAGANAC
ATGAATTCCAAGCAGAAACCAGGCAACTTTTGGACATCGTTGCAAGATCC
CTCTATTCTGAAAAAGAGGTTAGCTACGATATTAACTTTTATCAGATATT
TATTAGTCGGCCTAAAGTTACGAAACAACAAGAAAAGCTATTTAAGGTTT
TCCTTCAGACCGCAATTATTGCTCAAAACTTTAAAGTGTCATAAAAGCTT
GTAGCTTTTGATTTAGAAGATGGCTTTGGTACCATTGGTAGGCTATTTTC
ATACTCTGCGTCCCTCGTGGTCTAAGGGTTGAATTCTTTTGAAGGGAAAA
AATTCACTTATGATAATTGTCATTTAGGTCTTCATTCGAGAGATTGTGTC
GAATTCATCGGATGCTCTCGAGAAGCTGCGGCAAGTTCAAGTTACTGGTC
AACAAATTTCTGATTCTGATTCTCCCCTTGAAATCCATCTGACCACTGAT
GAAGAAAAGGGCCTGTTCATTATCCAAGATTTTGGTATCGGCATGAGCAA
AGATGAGCTTATCAATAACCTTGGTACGATCGCTCGATCAGGCTCAAAAG
CTTTTATTGAGAAAGCTAAGCACGAGAGCATTGACGCTCAAAACATCATT
GGACAATTCGGTGTGGGATTTTATTCCACCTTTATGGTTGGTGATAAGAT
TGATGTTTTTACCAAATCTTATGAGCCAAGTGCTTCTGGATATCATTGGT
CATCCGATGGGTAAGTAGAAAAAAAAGGCTTCACAAAATAATAACCAAAT
CTGTTATGTCGAATTCATTTTTTTTTCCTCGATTTAATCCTATTAATTTA
GTTGTAAGGTTGCCAGTCACTTTTAACTTTGTGATTTTCTCAAGCTTGTA
TCGGAGCAATAATCTCTTTCCCACCTTTGCGAGTTTGTCACGTATTTTGT
AGTTTGAAAGATAAATGAAATGTTTCAAAAATTATATTATCATGTTTGTG
TAATGCAATTGACGTAACATGTCTTAAAATACTATTCAATCGAAGTTTTT
TTGTTTACCGTTGCATAACAGCCTGTTCAAACGTTCAGTGAAGGGGTCAG
TCGTTCATATACTGAAACCGCTAAGGAAAAAAATTTACCTTAAGCGAGAA
TTTTATCACATCAATATGTCGGACGGCTATTTCATTTTGAAAAATTTGAA
GATTGGGTTCTCATAAAACTACTTTAAACTTTAAAGTGGCTCTTTAGGGT
TAGACCATGTTCACACACGACGGTTCCGTTTCGCTCCGAAACGAAATGAA
GCCATTCTATTGGTTAGAAGTGACGTAAAACTTGAATGGGATAATTGAAA
CAAATCTGAGCGATCTCCATCCATTTACGAAAGCTTTCTCCTATTAACAG
ATCTGGCTCATACGAGATCGCCGAAGCTGAAGGCGTAACACGTGGTACAA
AAGTCATCATCCATTTGAAATCTGATGATCGAAGGTTCTCCCTCAAAACT
ACTGTCGAAGGTGAGAATTTACAAAACTGTTCACTCATCATGGTGCTTGT
TCTTCTCTAGATGAAGAATCTAAAATGGAAGGTGCTGTGAAAATACGATG
CCATTACAAAAACAGTAATATCCTTTGTATATGTTCAATTTTATGGCTTT
TTTTAAAACAAGTACCTGAAAGAATGGTCCAGGCAACTATCTGTTTTTGA
ACGTTTTGAAGCTTGGAATAGACTTCGGAAATAACTTACCTGTATATTTT
AGATATCATTCGGCGCTACAGTAACTTTGTCGGATTTCCCATTTACTTAA
ATGGCTCAAGACTCAACAACATTGATGTAAGTGTATCTGAATGGGTTGGC
AAACGATATCATCCACCAGGATGCATCCTCTCTTATTTTCCCCCTATTTT
CTACTTTCCTATCTTCTATCCTGATTTTCTGACTTTCTCTAGTGTTTCTA
ACTGTTTTCTAAGTATTTTTCTGAAATTTGACCGTACCGGTGTGGTCTCC
GACCCCGGCTCGAACCACCAAATGCGAGTAACCTTGGTTTACAAACCCAA
CGCTCAACCGCTTGAGCCAACGAGACACGGCAGAAAGTTGTCACTCACAA
ATACTTATAGCGTGTAATTTACAGACCTTTATTAAGAAAGCTCCCAACCC
TACCGGTGCCCCTACAAGGATCCCTACGGGATCCTAAGTTAGGTCACAGG
GTACGGATGCCCCTAAGAAGGCCTTCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCTCCA
ACCCTAACCCTAACTGATAATAACCGAACCCCCGTCTAGGTCCGCAGATT
GAAAAATTTCACTTGCATCCTGGTGGATGATATCGTCTGCCAACCATCTG
AATGGGCGTGTATTCCTTAAATTTTCTAATAGTTTCAACGTTATTTGATG
CCTTAGATACCTGTATCTAAAGGATTGTTTATAAAGAATTAAACGAGGTT
GGCATGAATTACCCCCTTACTCCACACATGTTTAAATAAAGAACCTTTTG
ATAAATGGCTCATAAGATTATGTACATCCCTCATCCCTTGACCCTGACCT
TGGTAGATACTTCATACGGACACTCGTTCGTTTACGTTCTTGCAATATTT
GCTGAAATGGTTTTGAGAACTTCACAGACAATTATCAATACGAATGTAAA
AACTTGACTTGAATAATTATAGGCTTTATGGACGAGCTCAGAGAGGGATG
TCAGCGAAACAGACCATTCCCAATTCTATCAGTTTATTTCCAATACGTCA
GACGAACCTCGCTATTCGCTCATGTACAAAGCGGACGCCCCATTGAACAT
TCGTAGTGTTTTATACGTACCTTCCAATATCCCAGAAATGTTCGGTTTCG
GGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGAAGATTTTGATTCAA
TCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGTTTCATTCGTGGTGT
TGTTGATAGTGAAGACATCCCATTGAACTTGAGTAGAGAACTCCTTCAAG
ATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTGTTACTAAACTACTA
AGGTACTTCTTAGAACAATCGCGAAAAGATGAAGAAAAATTCACGAAATT
TATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGTGGTCACTGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002294XLOC_002294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004121-exon-sc0000039-1575043694:398017..398234TCONS_00004121-exon-sc0000039-1575043694:398017..398234Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1575043694:397375..397757TCONS_00004121-exon-sc0000039-1575043694:397375..397757Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1575043694:396625..396734TCONS_00004121-exon-sc0000039-1575043694:396625..396734Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1575043694:396309..396382TCONS_00004121-exon-sc0000039-1575043694:396309..396382Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1575043694:394937..395412TCONS_00004121-exon-sc0000039-1575043694:394937..395412Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1510915933:398017..398234TCONS_00004121-exon-sc0000039-1510915933:398017..398234Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1510915933:397375..397757TCONS_00004121-exon-sc0000039-1510915933:397375..397757Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1510915933:396625..396734TCONS_00004121-exon-sc0000039-1510915933:396625..396734Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1510915933:396309..396382TCONS_00004121-exon-sc0000039-1510915933:396309..396382Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1510915933:394937..395412TCONS_00004121-exon-sc0000039-1510915933:394937..395412Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1491911889:398017..398234TCONS_00004121-exon-sc0000039-1491911889:398017..398234Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1491911889:397375..397757TCONS_00004121-exon-sc0000039-1491911889:397375..397757Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1491911889:396625..396734TCONS_00004121-exon-sc0000039-1491911889:396625..396734Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1491911889:396309..396382TCONS_00004121-exon-sc0000039-1491911889:396309..396382Clytia hemisphaericaexon
TCONS_00004121-exon-sc0000039-1491911889:394937..395412TCONS_00004121-exon-sc0000039-1491911889:394937..395412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:394937..398234 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.1233	26.7406	15.2404	6.39782	9.90326	13.9616	15.1864	9.96191	17.5178	15.6781	45.0598	32.8427	58.8881	56.7357	49.0028	51.0041	35.6575	44.9595	30.5088	38.1143	47.4413	52.9948	17.3961	36.532	40.2316	29.7986	24.5455	22.6622	22.3304	21.1735
Blast
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BLAST of TCONS_00004121 vs. Swiss-Prot (Human)
Match: TRAP1 (Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens GN=TRAP1 PE=1 SV=3)

HSP 1 Score: 471.47 bits (1212), Expect = 6.661e-160
Identity = 225/372 (60.48%), Postives = 292/372 (78.49%), Query Frame = 3 
Query:  150 HEFQAETRQLLDIVARSLYSEKEVFIREIVSNSSDALEKLRQVQVT-GQQISDSDSPLEIHLTTDEEKGLFIIQDFGIGMSKDELINNLGTIARSGSKAFIEKAKHESIDAQNIIGQFGVGFYSTFMVGDKIDVFTKSYEPSASGYHWSSDGSGSYEIAEAEGVTRGTKVIIHLKSDDRRFSLKTTVEDIIRRYSNFVGFPIYLNGSRLNNIDALWTSSERDVSETDHSQFYQFISNTSDEPRYSLMYKADAPLNIRSVLYVPSNIPEMFGFGRMELG--VSLYSRKILIQSKAQKILPEWLRFIRGVVDSEDIPLNLSRELLQDSALIQKLSDVLVTKLLRYFLEQSRKDEEKFTKFMKECGNYFREGVVT 1256
            HEFQAET++LLDIVARSLYSEKEVFIRE++SN+SDALEKLR   V+ GQ + +    +EIHL T+ EKG   IQD GIGM+++EL++NLGTIARSGSKAF++  ++++  +  IIGQFGVGFYS FMV D+++V+++S  P + GY W SDGSG +EIAEA GV  GTK+IIHLKSD + FS +  V D++ +YSNFV FP+YLNG R+N + A+W    +DV E  H +FY++++   D+PRY+L YK DAPLNIRS+ YVP   P MF   R ELG  V+LYSRK+LIQ+KA  ILP+WLRFIRGVVDSEDIPLNLSRELLQ+SALI+KL DVL  +L+++F++QS+KD EK+ KF ++ G + REG+VT
Sbjct:   88 HEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPE----MEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNTLQAIWMMDPKDVREWQHEEFYRYVAQAHDKPRYTLHYKTDAPLNIRSIFYVPDMKPSMFDVSR-ELGSSVALYSRKVLIQTKATDILPKWLRFIRGVVDSEDIPLNLSRELLQESALIRKLRDVLQQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVT 454
The following BLAST results are available for this feature:
BLAST of TCONS_00004121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAP16.661e-16060.48Heat shock protein 75 kDa, mitochondrial OS=Homo s... [more]
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