TCONS_00004117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004117
Unique NameTCONS_00004117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004117 ID=TCONS_00004117|Name=TCONS_00004117|organism=Clytia hemisphaerica|type=transcript|length=674bp
GGAAGGTTATAGACAATGGGTAAAGAAAATGTTATTGAAAAGAATTGTGA
ATCATCATATATTAGCATTGCATCTCTGGATCAGTGGAATCATTGCTGTC
ACTTGGAACgattttttgagagaaaataaTGTCTATGTAGATTGGCAAAG
AGACGTCACAAATCATCAAGAATCATTTCGATGTTATCCGTCCGAATCTC
TGGTTGAAATCAATAAAGAGAGAACTGATGTTCTTCCTAGCTATATCAAG
ATGAAAACAGATTGCACATCCTGTTGCTTGAACTCCCTGTTTGAATGTGT
AGCTCCAAGAAAAATcatgaagatgaagaaatttAAACAGTTTTCAACGA
AACACGTGTATTTGGGCGAAAGTCAGCATGCAGTATTTGAAGTGGATAAA
TGTATATGTAGATGTCGGATAACAACAAATGATTGCCCTCCAGGGACGCG
CTTTGAAAAAGAGAGCTGCGCATGTATCGATCCCGTCAAATTTCCAACAG
GCTTTGAATGCTGACGAAGAAGAGAATGGGGACGACAATTTTTTCATAGA
TAAGGAAACTCGTTACCATTATTTTTAGAAAGGACATTAAACCTTATTAC
AATTATTCTTAATGGTAGTTAATTAATTGTTTTAATATTATTATTTAAAG
GATGTATCTATATATTGATGTAGT
Run BLAST on NCBI

protein sequence of TCONS_00004117-protein

>TCONS_00004117-protein ID=TCONS_00004117-protein|Name=TCONS_00004117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
EGYRQWVKKMLLKRIVNHHILALHLWISGIIAVTWNDFLRENNVYVDWQR
DVTNHQESFRCYPSESLVEINKERTDVLPSYIKMKTDCTSCCLNSLFECV
APRKIMKMKKFKQFSTKHVYLGESQHAVFEVDKCICRCRITTNDCPPGTR
FEKESCACIDPVKFPTGFEC
Run BLAST on NCBI

transcript from alignment at sc0000039:371769..375381-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004117 ID=TCONS_00004117|Name=TCONS_00004117|organism=Clytia hemisphaerica|type=transcript|length=3613bp|location=Sequence derived from alignment at sc0000039:371769..375381- (Clytia hemisphaerica)
GGAAGGTTATAGACAATGGGTAAAGAAAATGTTATTGAAAAGAATTGTGA
ATCATCATATATTAGGTACCAGTACATCTTTTGCACCCACTTTTCAAATT
GAACAACATATGGTAACTATATAAGTTTTGATTTAAATTTAAAACGAATT
TATATTTGATCAATAAAATATATTCATCAAAATTCCCTCTAAAGATAAAA
AAACATGTCCATGTCCTGTCCATTCGTTATCTCGCCTTTTAAGATGTGGT
CTTCAGAAACACGTTTCACTTAATTTACTAAGAAGCTTAAAGGACTAATT
TGACATTGATTTTACTTGACATGAATTATATTTTATACTTATCTTGTAAG
TTATATTCTAAATTTCGTATGATATTTTACGAATTTACATGCATAACGTT
TATTAACATATGCAGGCTAGGTTTTTGGTACCCAAACAATGGCTCTATTG
TTTGAGAACAATAGAATGCTAATTATAATGTGAGCCTGATAGACACTTGG
TATGACACCTGGTATGACTACCTATGGTAGACACTTGCTTATAAAAATTT
TGACAATTTAACTCGTTAATTTGTATTATCATTTCAGCATTGCATCTCTG
GATCAGTGGAATCATTGCTGTAAGAATTTGAATATTTTTACTTTAATTTG
ATTTCACACATAATTTTTAACTTTCTGAAAATTTAAACTCGTAAGTTCTT
CTTTTTCAACTCGAAGCTGATGAAAAAAATCCTTGAAATTTTTTAAAGTT
TTACACATAAGCCCAATTTGAATTTGTGGGGCTATCTCATTGGACGAAAC
AAACTTTATTATTGAGAATTCGAGTGAAAGTCGGCATGTGTGTCAGTGTC
TTTTTTTTTGCTCGAATTAAATTTGTTTTTCTTATCAGGTCACTTGGAAC
GATTTTTTGAGAGAAAATAATGTCTATGTAGATTGGCAAAGAGACGTCAC
AAATCATCAAGGTTTGTTCTCCAAATTATCTTCATATACGATCTATCTCT
ATTATCGAGTCATGAGTATTTCCTTGTCTAAATTACGTGCTTTCTGTGAA
CGAGTCTACCTATTAATCATATGTTTTCGTAAGCCTAGCGTCACTCTAAT
TAGAGCTTGATTCTCAGAAACTGGCTCAAAGTTTTACTTTTTTAGCCCAC
TCGCTGTTTTTTTGTAATTTGCTTTTTGTGCAAACTTTTTCTAGAAGTAA
CGACGTCATCAACCCCCCATACTCTCTTTCCCTGCCTCTCTTCCTTGTGG
TTGTCGTTTGTACGTTCAACAGATCTTTCTAAAAATTGTTTTTGTTTCTC
CAAGGGAAGGGCAGGTGGTTGAGGAGCTAAAAGTGTGGTATGCAAAGAAC
TTGCAGAGGATTTAAGTTTCATTATAACCTTTCATCGTTTTTAATTAGCC
TTTAGAATGTTTGTGGGTTGTTTGAATCAAATTATGAAATATAAGCATTT
TTTTTGTTCATTTTAAAACATACCAGCATGTCATGGTCACTATAGATTAA
TTTGCAGTGTCATTGTATGCCAAAAGTTTAGCGATATAGTACACCCTCTG
GCCACTGCCGGCTATTTACACAGATATACCAATACACTTTTTGACTTTGA
TAGCTTGCCTAACCTTAACCAGCTTGATTTCAAACAAACGGGAAAAAAAG
TTTCCTTCTCTACTCAAATTTAAAGTAAACAGAGAAAAAACCTTGATTTC
TTCTAAAATTTCATCTACATGTTTCTAGTATAACTTTTAGGTGTCCTAAG
TTCTGTAGAATTTCCAAATTTTATTTTTCATATAATAAACCTCATAACCC
TCCAAAAGGGTTACTGTTCGTTTTCGTCTGGCCTCTTATAAGAACTTTAA
TATATTTCCTGTCTTTTTATATATAGAATCATTTCGATGTTATCCGTCCG
AATCTCTGGTTGAAATCAATAAAGAGAGAACTGATGTTCTTCCTAGCTAT
ATCAAGATGAAAACAGATTGCACATCCTGTTGCTTGAACTCCCTGTTTGA
ATGTGTAGCTCCAAGAAAAATCATGAAGATGAAGAAATTTAAACAGTTTT
CAACGAAACGTAAGTCTAAGAATTACTTTGTATATTAACTTTCAAAGGAT
AGTTAATGCTCTTTCCTAGAAAAACCTGACACGCCTTCTGTTGAAGTTAC
CTCTTAAATCATAATCCGATAGATTTTAAATCCCAGGATTTTAAACATTT
ACTTTGCAATTCCTTGATCTCGTTAAAACCACTTGACAATTTACAGTGAC
ACCCTGTAATCGTACTTCGGGCCCTGCTAAAAAAATTATGTAAGGTTTTT
AATCTAATGGACGAGAAGGTTTTTAATATTGACTGTCTTTGATATCAATC
ACATCAATAATATCAATTTCAAGGACGTGTCCCTATCGAACTAATCTTGA
TCATTTTAAGTACTAATAAAAGGATTTCCTACTGGTAGAACACTGCTTAC
CAAAAAACAATTTCCGCCCCTAACACCCTCTAATAATTACAGCCCAAAAC
ATTCTTTAGATTTTGGAAAGTGCTTTAATGCTTCCAAAATCTTTCCTGGA
TCCACGATCTACAAAATTATTTATTCTTTCGGAAATTGACACCCCTTTGC
TATTAGGATTATTTGTCACTAAAAGAAATAAACAAAGATTCGTCAAAATT
TGTATAGAAGGCCCTCGTTATTAATCCGCATTTACGTGATCGGAAAACAA
ACCACGTGCAGGTTTAAACGGGTCTGCAAAATTTGTACAAGGTGCTACCT
ATTAGTCATTGCCTCATGTTTTGACTCTTGTCGATAATGTCACAAATATG
ATTTGTTGAAGCGTCGAAAAGATAATTTCAAGCAAGATGTTGATACTTAA
TACATATCATAGTCCGATTAAATTTAATATTCTTTTCGTTAAAATATTTG
ACACAACTAAATGTCATCCAAATTTCAAACTTAGTTGCTGATTTTGTTTC
GGTGTGTCACCCAATATTTATTAATTAAACCCTACAGTTATCTCTTAGCC
AAACTTTTGAATAGAAATTCCGCACATAATAATTTTAGTACATGTCCCGG
GTTTAGGTAGTTTCAGTGAGACGAGGGTGACTAGATGAAGGGCTAGCAAT
TAAGTAATTTATTAAATTTATACTTGGTAGCACTTGTACTTTTACTGAAA
ACTCGAAAAAGCCAAAGTCAATCTAAATCCTACCAAAATTTTAGCCCTTC
TTATATATCACATGGTTATGCTCTTTTTTTGTGAGTCAGAGGGTTTGACG
TGGTATCAAAATTACTAATTTTTCCTTTTATTCTATTTTCAGACGTGTAT
TTGGGCGAAAGTCAGCATGCAGTATTTGAAGTGGATAAATGTATATGTAG
ATGTCGGATAACAACAAATGATTGCCCTCCAGGGACGCGCTTTGAAAAAG
AGAGCTGCGCATGTATCGATCCCGTCAAATTTCCAACAGGCTTTGAATGC
TGACGAAGAAGAGAATGGGGACGACAATTTTTTCATAGATAAGGAAACTC
GTTACCATTATTTTTAGAAAGGACATTAAACCTTATTACAATTATTCTTA
ATGGTAGTTAATTAATTGTTTTAATATTATTATTTAAAGGATGTATCTAT
ATATTGATGTAGT

Coding sequence (CDS) from alignment at sc0000039:371769..375381-

>TCONS_00004117 ID=TCONS_00004117|Name=TCONS_00004117|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0000039:371769..375381- (Clytia hemisphaerica)
ACGTGTATTTGGGCGAAAGTCAGCATGCAGTATTTGAAGTGGATAAATGT
ATATGTAGATGTCGGATAACAACAAATGATTGCCCTCCAGGGACGCGCTT
TGAAAAAGAGAGCTGCGCATGTATCGATCCCGTCAAATTTCCAACAGGCT
TTGAATGCTGAAATCATTTCGATGTTATCCGTCCGAATCTCTGGTTGAAA
TCAATAAAGAGAGAACTGATGTTCTTCCTAGCTATATCAAGATGAAAACA
GATTGCACATCCTGTTGCTTGAACTCCCTGTTTGAATGTGTAGCTCCAAG
AAAAATCATGAAGATGAAGAAATTTAAACAGTTTTCAACGAAACGTCACT
TGGAACGATTTTTTGAGAGAAAATAATGTCTATGTAGATTGGCAAAGAGA
CGTCACAAATCATCAAGCATTGCATCTCTGGATCAGTGGAATCATTGCTG
AAGGTTATAGACAATGGGTAAAGAAAATGTTATTGAAAAGAATTGTGAAT
CATCATATATTAGACGTGTATTTGGGCGAAAGTCAGCATGCAGTATTTGA
AGTGGATAAATGTATATGTAGATGTCGGATAACAACAAATGATTGCCCTC
CAGGGACGCGCTTTGAAAAAGAGAGCTGCGCATGTATCGATCCCGTCAAA
TTTCCAACAGGCTTTGAATGCTGAAATCATTTCGATGTTATCCGTCCGAA
TCTCTGGTTGAAATCAATAAAGAGAGAACTGATGTTCTTCCTAGCTATAT
CAAGATGAAAACAGATTGCACATCCTGTTGCTTGAACTCCCTGTTTGAAT
GTGTAGCTCCAAGAAAAATCATGAAGATGAAGAAATTTAAACAGTTTTCA
ACGAAACGTCACTTGGAACGATTTTTTGAGAGAAAATAATGTCTATGTAG
ATTGGCAAAGAGACGTCACAAATCATCAAGCATTGCATCTCTGGATCAGT
GGAATCATTGCTGAAGGTTATAGACAATGGGTAAAGAAAATGTTATTGAA
AAGAATTGTGAATCATCATATATTAGACGTGTATTTGGGCGAAAGTCAGC
ATGCAGTATTTGAAGTGGATAAATGTATATGTAGATGTCGGATAACAACA
AATGATTGCCCTCCAGGGACGCGCTTTGAAAAAGAGAGCTGCGCATGTAT
CGATCCCGTCAAATTTCCAACAGGCTTTGAATGCTGAAATCATTTCGATG
TTATCCGTCCGAATCTCTGGTTGAAATCAATAAAGAGAGAACTGATGTTC
TTCCTAGCTATATCAAGATGAAAACAGATTGCACATCCTGTTGCTTGAAC
TCCCTGTTTGAATGTGTAGCTCCAAGAAAAATCATGAAGATGAAGAAATT
TAAACAGTTTTCAACGAAACGTCACTTGGAACGATTTTTTGAGAGAAAAT
AATGTCTATGTAGATTGGCAAAGAGACGTCACAAATCATCAAGCATTGCA
TCTCTGGATCAGTGGAATCATTGCTGAAGGTTATAGACAATGGGTAAAGA
AAATGTTATTGAAAAGAATTGTGAATCATCATATATTAGACGTGTATTTG
GGCGAAAGTCAGCATGCAGTATTTGAAGTGGATAAATGTATATGTAGATG
TCGGATAACAACAAATGATTGCCCTCCAGGGACGCGCTTTGAAAAAGAGA
GCTGCGCATGTATCGATCCCGTCAAATTTCCAACAGGCTTTGAATGCTGA
AATCATTTCGATGTTATCCGTCCGAATCTCTGGTTGAAATCAATAAAGAG
AGAACTGATGTTCTTCCTAGCTATATCAAGATGAAAACAGATTGCACATC
CTGTTGCTTGAACTCCCTGTTTGAATGTGTAGCTCCAAGAAAAATCATGA
AGATGAAGAAATTTAAACAGTTTTCAACGAAACGTCACTTGGAACGATTT
TTTGAGAGAAAATAATGTCTATGTAGATTGGCAAAGAGACGTCACAAATC
ATCAAGCATTGCATCTCTGGATCAGTGGAATCATTGCTGAAGGTTATAGA
CAATGGGTAAAGAAAATGTTATTGAAAAGAATTGTGAATCATCATATATT
AGACGTGTATTTGGGCGAAAGTCAGCATGCAGTATTTGAAGTGGATAAAT
GTATATGTAGATGTCGGATAACAACAAATGATTGCCCTCCAGGGACGCGC
TTTGAAAAAGAGAGCTGCGCATGTATCGATCCCGTCAAATTTCCAACAGG
CTTTGAATGCTGAAATCATTTCGATGTTATCCGTCCGAATCTCTGGTTGA
AATCAATAAAGAGAGAACTGATGTTCTTCCTAGCTATATCAAGATGAAAA
CAGATTGCACATCCTGTTGCTTGAACTCCCTGTTTGAATGTGTAGCTCCA
AGAAAAATCATGAAGATGAAGAAATTTAAACAGTTTTCAACGAAACGTCA
CTTGGAACGATTTTTTGAGAGAAAATAATGTCTATGTAGATTGGCAAAGA
GACGTCACAAATCATCAAGCATTGCATCTCTGGATCAGTGGAATCATTGC
TGAAGGTTATAGACAATGGGTAAAGAAAATGTTATTGAAAAGAATTGTGA
ATCATCATATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002292XLOC_002292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004117-exon-sc0000039-1575043694:375317..375381TCONS_00004117-exon-sc0000039-1575043694:375317..375381Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1575043694:374763..374794TCONS_00004117-exon-sc0000039-1575043694:374763..374794Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1575043694:374421..374493TCONS_00004117-exon-sc0000039-1575043694:374421..374493Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1575043694:373323..373505TCONS_00004117-exon-sc0000039-1575043694:373323..373505Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1575043694:371769..372089TCONS_00004117-exon-sc0000039-1575043694:371769..372089Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1510915933:375317..375381TCONS_00004117-exon-sc0000039-1510915933:375317..375381Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1510915933:374763..374794TCONS_00004117-exon-sc0000039-1510915933:374763..374794Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1510915933:374421..374493TCONS_00004117-exon-sc0000039-1510915933:374421..374493Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1510915933:373323..373505TCONS_00004117-exon-sc0000039-1510915933:373323..373505Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1510915933:371769..372089TCONS_00004117-exon-sc0000039-1510915933:371769..372089Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1491911889:375317..375381TCONS_00004117-exon-sc0000039-1491911889:375317..375381Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1491911889:374763..374794TCONS_00004117-exon-sc0000039-1491911889:374763..374794Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1491911889:374421..374493TCONS_00004117-exon-sc0000039-1491911889:374421..374493Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1491911889:373323..373505TCONS_00004117-exon-sc0000039-1491911889:373323..373505Clytia hemisphaericaexon
TCONS_00004117-exon-sc0000039-1491911889:371769..372089TCONS_00004117-exon-sc0000039-1491911889:371769..372089Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004117-proteinTCONS_00004117-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:371769..375381 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.08126	4.29654	2.35403	1.9472	0.938869	1.38218	8.46033	8.41406	1.26979	3.81265	3.36248	0.825709	2.47153	0.548311	6.497	2.88255	0.773216	2.4803	2.72714	6.31221	1.00819	0.984986	1.20635	2.05249	1.8943	1.81856	2.98176	3.5889	1.60897	0.959848
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029034Cystine-knot_cytokine
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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