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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004099 ID=TCONS_00004099|Name=TCONS_00004099|organism=Clytia hemisphaerica|type=transcript|length=1063bp
AGAATGACAATCAAAGTGGACGCACAACAACAGACCAAAATGAGACTTTC
TTCGTCACCGCTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTGT
TGGGTGAAAAATATTGCGGAAAGACAGCGTTGACAGTTCGATATTTAACG
GGGAAGTTCATTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCA
TCAAGCAAACTTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTT
CACAAAATTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGT
ATGCTATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAA
CATGTTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAA
ATCGGACATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATC
TAGCTAAACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGAT
TATGAGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGA
TCGACATACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTA
ATGACAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCG
AGATCTCTGCATTTacctaaagaaaataaagctgtTAAAGTTGGACAAAG
TAAAAGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGA
GTCTCAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGACTTGA
GGGAAGAGAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAGATTT
TGGGCTGATTGAATTATGTGATTGTCAACACGGcttgaaaattttcagag
tttAGAATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAGTATT
TGCTAATAAATTGACtctcaattttcatttttctgtgttttcaccagaag
gtttttctttttttgcaaatggAAGCTGATGTTTTAAGAATCTATAATAA
CTCTGGTAAACAT Run BLAST on NCBI transcript from alignment at sc0000039:110939..113394- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004099 ID=TCONS_00004099|Name=TCONS_00004099|organism=Clytia hemisphaerica|type=transcript|length=2456bp|location=Sequence derived from alignment at sc0000039:110939..113394- (Clytia hemisphaerica)
AGAATGACAATCAAAGTGGACGCACAACAACAGACCAAAATGAGACTTTC
TTCGTCACCGCTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTGT
TGGGTGAAAAATATTGCGGAAAGACAGGTAAGTTGGATCCAATCACATCT
AGCTGACTTTTTTAAATATTGATATGCCTCGTGATTATACTTCGCAGTAA
AAGCCAAAAGCTGATACAGGCTAGATCTTTATTGGTCAATTTAAGTCAAT
TTTGAACTTTTACAAAGGCTGCGATCACCACGTTGTAGAGAACTGCGACA
TTTGTTCCGGAAAAATCTTGGAATCAGTATCAAAAAATTAGATGCACGTA
GGTGTCTAAAATATGACCGGCAACCAGTATTGAATATCTTGAAACCAAAA
AAATATGACCAGCAAATACGAGCAAATATATCATTTTTTGATGATTCATG
AAACATCAGGCATTGCATCCCTCTTTGATAAAACAACATTGTGGGTTGAC
CCAAAACATCATGACAAACCCATACAACATAAATCAGTTATGTCAGAAGG
AGAAAGAAACCCTGCTGATGGAAAAATACCTTCCTCCGCAGAAAATGTAT
GGACGGAGGTTTGTGTACAAGATAAACAAGCACGGATTAGGATATATGAT
TATGCAATGTTAGCTTTCTCAANTGCTGATGGAAAAATACCTTCCTCCGC
AGAAAATGTATGGACGGAGGTTTGTGTACGAGATAAACAAGTACGGATTA
GGATATATGATTATGCAATGTTTGCTTTCTCAAGTAATCAGTAAAACTAA
ATCTCGTGTTAAACGTTATTATAAACAGCATTTTTTCAAGATTCTTGATT
TTTTGTCTACTACTTGTCTGTAGATCAGGTCTGACTTTGTAAAACTAACT
AGAACATCAAAGTTATTATTGACTAAGAACCTAAATTTTGCTGATTGAAT
CAAGTGAGCATCTGTACCATACCTATGTTAGTGCTAACCGAAGCTAAGTT
GAGTAAATGTCTGCAAATGATTCAATTTAAGGGACTTTGTAGAAAGATTT
TTAAATTACTTCCACAACTATAAAACTGGGAAACACCAGAAAGTGGAGAT
ACTAGATCCAAAAAAGATAGAGACTACTCTAAAAAGTCTTCACAACATCC
CTGTAAGTTTCAAATGTAAATAACAAAAATACAACCATACAGTACCCACT
TCAACTAAATTTCAAAATTCGATATGGAAGCAAAGTGATATATTTTCACA
TTTTTGACTCGTTTTAGCGTTGACAGTTCGATATTTAACGGGGAAGTTCA
TTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAAGCAAAC
TTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTTCACAAAATGT
AAGTAGAATAGAAAACACCCCTGTCTCAAACAGTGTAACAGTACATAAAA
GTTTCACCGAGGCAAAAGGAGTCCTTGAGCGCTTGCCCCTTTCAGAAATG
ACTGGTAGCAGTTGAAACTTTTAGCTTTAGTTTCCAGGGTGAGCTTATCT
GTATTTCTTACACATTTTCTCCTTTTCCATACAACCCTTACTATAAAAAT
GAACTACATATTTCAAAACTTAGGAACAGTATTTTTGATATTTTCAGACA
GTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATGCTAT
CAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACATGTTG
TTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATCGGAC
ATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATCTAGCTAA
ACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGATTATGAGA
AGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGATCGACAT
ACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATGACAG
TTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGATCTC
TGCATTTACCTAAAGAAAATAAAGCTGTTAAAGTTGGACAAAGTAAAAGC
CCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTCTCAG
TCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGGAAGA
GAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAGATTTTGGGCTG
ATTGAATTATGTGATTGTCAACACGGCTTGAAAATTTTCAGAGTTTAGAA
TCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAGTATTTGCTAAT
AAATTGACTCTCAATTTTCATTTTTCTGTGTTTTCACCAGAAGGTTTTTC
TTTTTTTGCAAATGGAAGCTGATGTTTTAAGAATCTATAATAACTCTGGT
AAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004099-exon-sc0000039-1575043694:113268..113394 | TCONS_00004099-exon-sc0000039-1575043694:113268..113394 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1575043694:111997..112127 | TCONS_00004099-exon-sc0000039-1575043694:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1575043694:110939..111743 | TCONS_00004099-exon-sc0000039-1575043694:110939..111743 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1510915933:113268..113394 | TCONS_00004099-exon-sc0000039-1510915933:113268..113394 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1510915933:111997..112127 | TCONS_00004099-exon-sc0000039-1510915933:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1510915933:110939..111743 | TCONS_00004099-exon-sc0000039-1510915933:110939..111743 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1491911889:113268..113394 | TCONS_00004099-exon-sc0000039-1491911889:113268..113394 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1491911889:111997..112127 | TCONS_00004099-exon-sc0000039-1491911889:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004099-exon-sc0000039-1491911889:110939..111743 | TCONS_00004099-exon-sc0000039-1491911889:110939..111743 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:110939..113394 - |
Blast
BLAST of TCONS_00004099 vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 4.043e-16 Identity = 35/131 (26.72%), Postives = 64/131 (48.85%), Query Frame = 3
Query: 255 KLTSAIVDADGVIIVYAINSKSSFHRAEELLKHV--VAVSCKPSIAIAANKSDMWHYRTVMRSDGEYLAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVINDSSPPPIEDFEGR 641
+L I AD V+IV++I S+ +L +HV + + + + + ANK+D+ H + V G LA GC ++E+S +Y V F+V+ K ++ + E + +I P ++D + R
Sbjct: 103 QLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRR 233 HSP 2 Score: 43.8986 bits (102), Expect = 4.043e-16 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 1
Query: 76 KKTFKIVVLGEKYCGKTALTVRYLTGKFIYDYATGEDFIYPHQANLNNGDVQINIVDT 249
++ KI V+G GKTAL VR+LT +FI DY +Y Q + + + + DT
Sbjct: 31 RRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDT 88
The following BLAST results are available for this feature:
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