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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004098 ID=TCONS_00004098|Name=TCONS_00004098|organism=Clytia hemisphaerica|type=transcript|length=1749bp CCTCTTTTAAACCTCTTTTATTTTGGAAGGTTTTTATTGTAAAGTTCAAA ACCTTTTAATTCACTGaaaatttatagaaaatatGTGAAGAAAAGTCAAA GTTGTTTAAAGCTTTAGATGTTTTAAAATATGAAGGTAAAGTTGgtaaaa aaatggataaaacTACAATAGAGCTTGACACTTCTAAGGTGCAGGAAAAT CCGAATGCCATTGGAATGGGGGAAATGACCACACCAAAACTGCAAGATGA AAATCAAACTCCCTCATTGGTTGACagggaaaaaaagaagatttcaaGGG GGAAAGAAAAAATGGggtcaaaacaaagaaaaagcatTAAGCTGAAGGAG AATGTTGATGAAGTTGTTGCACCATCGCCaaagaagaaaattgataaTGT CGCTGATGAAAATGATcgaataaagaagaaaatactTGAATTGACGTTTA GTCGTGACACAGGAGAGTTAGTCTCAAAAATGGATCAAGAATACGTGGAA GAATTGAAAGCAGCTTTCGAACACGCTGACATCAATGATAGTGGTAATAT CCAAACAAGTGAACTGGTTATTCTTCTGAAGAATCTGGGCGTGAACGTCG CTGATACTGAAATGCAGGACATTGTCAACGAGTTTGATTTCAATGGAACT GGTGCTATTGATTTCAATGAGTTTCTTCAATTCATGGCGAGAAGAGATGA ATGGAGATGTGAAGAAGATATCAAAATTGCATTTAGTGTTTTTGACCCTG ACAACGAAGGTTTCATTGACGTTCAAGAACTTCGTGAAATCATGCAGCGA GATGAAGAGAATTTGACTGAAAAAGAGATCAAAGAGATTTTATCAGTGGT CGACCAAGATGGAAATGGAAGAGTGGAATATAGTGAGTTTGTACAATTGA TGTTGAACGACCATGACGAGGGAGGCTAGAAAAACACGATGTTCAATTTG TATTCCATTAATGAGAGAGGTCAGGTGAACCCAATGGAAAAAAGTACCCG ATGAAAAAACACCTCAAGTATGCTTCCTAAATGTAGTCGAACGCTTGTAA CTGTGCAAATCAATGGAAAGTCAATTTACTAGATTGGTAAGACTCGTTGA ACTGCAGGACAGACGGATACAAAGCATGGTTTGGAGGATGTCTACTACCG CAATACATATTTTGGAGTTGGAACATATTTACATCCTCGCTTACCTCAAC GTTTTTTGCATTGGGATTATCACCATGGAAATGAAATCAtaacaaacatg aaaaaatactttcaaaactttcacGCATCAATATTTAGTAAAACCAAGGA AATTTGATAAATCCGATGACAATATCATACGATTGAAGCTCTCTCATTCG ATCTTCTACTATTCGATTGATaggctccattattcgatgatattgaaatt caacgtcaaaaagaaacactcataaacgacgctctgcCATTcaataagct cccttattcgatgaaaatcgaataagagagcgtcaacttaCGAAGATTCT TTGATAAAACTCAACGAAAAAAATCTGTTGAGTCAACTTCCGTGCTACTa actatttttctaaaaatattttctaacggCCACATGGTTATTATTTTTCA CCAACGCGCGTGCGAATTGGGATGATGAAGAAGTCGAGAAACATCCACCT ACGGCTGCTCTTAACCGCAAATTTATTAATTGCGACCGTTAGAAAGTTTG TGAAATATTGCACAACTCAATGTTGGCTTTATTACAAAGATTGGCTTCG Run BLAST on NCBI protein sequence of TCONS_00004098-protein >TCONS_00004098-protein ID=TCONS_00004098-protein|Name=TCONS_00004098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MDKTTIELDTSKVQENPNAIGMGEMTTPKLQDENQTPSLVDREKKKISRG KEKMGSKQRKSIKLKENVDEVVAPSPKKKIDNVADENDRIKKKILELTFS RDTGELVSKMDQEYVEELKAAFEHADINDSGNIQTSELVILLKNLGVNVA DTEMQDIVNEFDFNGTGAIDFNEFLQFMARRDEWRCEEDIKIAFSVFDPD NEGFIDVQELREIMQRDEENLTEKEIKEILSVVDQDGNGRVEYSEFVQLM LNDHDEGG Run BLAST on NCBI transcript from alignment at sc0000039:107405..110744- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004098 ID=TCONS_00004098|Name=TCONS_00004098|organism=Clytia hemisphaerica|type=transcript|length=3340bp|location=Sequence derived from alignment at sc0000039:107405..110744- (Clytia hemisphaerica) CCTCTTTTAAACCTCTTTTATTTTGGAAGGTTTTTATTGTAAAGTTCAAA
ACCTTTTAATTCACTGAAAATTTATAGAAAATATGTGAAGAAAAGTCAAA
GTTGTTTAAAGCTTTAGATGTTTTAAAATATGAAGGTAAAGTTGGTAAAA
AAATGGATAAAACTACAATAGAGCTTGACACTTCTAAGGTGCAGGAAAAT
CCGAATGCCATTGGAATGGGGGAAATGACCACACCAAAACTGCAAGATGA
AAATCAAACTCCCTCATTGGTTGACAGGGAAAAAAAGAAGATTTCAAGGG
GGAAAGAAAAAATGGGGTCAAAACAAAGAAAAAGCATTAAGCTGAAGGAG
AATGTTGATGAAGTTGTTGCACCATCGCCAAAGAAGAAAATTGATAATGT
CGCTGATGAAAATGATCGAATAAAGAAGAAAATACTTGAATTGACGTTTA
GTCGTGACACAGGAGAGGTTGGGAGTCTGGGTCTGTTTGACCCTTTTGTT
TAATCCATTTAATTGGGATTTTTTGATGTATAGTGAACAACTTTCTGCCC
ACTAATGACCATTGATTTAAAGTTTCGATGGCGAAATTGACTCCCTTTAC
CAGACCTCCAACAGTGATTTAATTCCATTGAACGTATTTATCAAAAGGAG
ACAAACATCTCTGAACACAGCAAAAGAACGTGACCTCATAAACCATTTTT
AAGGGGTTTGATCCATCCTTCTTCATCAAAATTTCATCAAGCTATATTAT
ATAAAATCACTGGCGTCAATAAAAAATAAATTTCGAAAAAACATCTAAAG
AACTTTTCGAGGGCGTGTAGCATCATCAAAAACTTTATTTACCCTTCTTC
ATTTTTCGTCAGGGTTCTTTTTTTGAAATATGTTGACAGATAACTGGTAG
TAAAATAAACATGGTAACCGTTTAAGACTTTACACCAGGTTGAGTGCTAG
ATATTTTGGTTAAATAGAGTCGACATGTTATGTGAATATTATTACAAGTC
TTTAGATTGTTTTTACCAGGGTCCTTTGAGCTGAATCGAGCATTAGAATG
GGCGAGAATTCGAACCTGAAATCCCTGGTTTGTGGCCACTAAGTTATCGT
TCCTTTTAATTACTGATAACATAACAAATTGTCCACGAACATTTCCAAAG
AGTTTATTTCTTCGATGACAACTCTTCCAAAGTGTTTCATGCAGTTTCAA
ACTCACAATTTGACTCAGCAATACCCGAAAGCTACTGATGTTGATTTTCT
TTCTCTCTTGTTTTCTTTCAGTTAGTCTCAAAAATGGATCAAGAATACGT
GGAAGAATTGAAAGCAGCTTTCGAACACGCTGACATCAATGATAGTGGTA
ATATCCAAACAAGTGAACTGGTTATTCTTCTGAAGAATCTGGGCGTGAAC
GTCGCTGATACTGAAATGCAGGACATTGTCAACGAGTTTGATTTCAATGG
AACTGGTGCTATTGATTTCAATGAGTTTCTTCAATTCATGGCGAGAAGAG
ATGAATGGAGATGTGAAGAAGATATCAAAATTGTAAGAATTCTCCCGCCT
TTAAGGCTTAATTACTGTTGTGCTTTCAACAGCAATTCTACGATGAGGAG
TTTATTTTTAGAGGAGTAGATGTCTGCTTATTCTTTTTAAGTCATGAATT
TCTTTCTCATGTTATAAAAAGGGTTCCTTTCAAGGCAGCCCTTAGCTCAA
CCTTAATAACCTCAACCTGCCATCAGATCAAACAACAATATCAGGAAAAT
TAGAAAAATTTCCATCGTGAATTATTGAAAGATCTTAGCTTTTCACCACG
TTAATTCGCTCAAAGAACCCACGATGAAATTTTCTAATTTTCCAATAAAC
TTTCTTTTTTCAAATAACTAGTAATAAGAGTCACAGTAAGCTTGAAATCT
CGTGGACAAATTCTATTTCAACGTTGGTTTCCATAACAAACGGACTCAAC
AAAATAATATCATTTCATTATAGGCATTTAGTGTTTTTGACCCTGACAAC
GAAGGTTTCATTGACGTTCAAGAACTTCGTGAAATCATGCAGCGAGATGA
AGAGAATTTGACTGAAAAAGAGATCAAAGAGATTTTATCAGTGGTCGACC
AAGATGGAAATGGAAGAGTGGAATATAGTGGTAAGTCTTTCTTCATAATG
TTGGAAGTCTTATCTTCAGTACCTTCAAGACCTATGTTCTATCAAACTGT
TGAGTTGTGTTAATGGGAAAGCCTGTAGTGTAGCCTATGTAGACTCAGTT
ACCTTTAGGTATCAACCTGAAGGGAGGGGTGGGCATGGCATTATTATAGT
AGTGGTATGTCCATGGTATGTCGTAATATTGGTTTAATACAAATCCTGCA
CCCCGGTCTCATTAAACAACGGGGTCTCTAATAAAGGGGGTTGAAACACT
CCATTAAATTGACTAAATTGAGATAGTAGCTCGATAATGAATTAATCCAA
AAACCATTTCTTTTATTCATTGGTAGAGTTTGTACAATTGATGTTGAACG
ACCATGACGAGGGAGGCTAGAAAAACACGATGTTCAATTTGTATTCCATT
AATGAGAGAGGTCAGGTGAACCCAATGGAAAAAAGTACCCGATGAAAAAA
CACCTCAAGTATGCTTCCTAAATGTAGTCGAACGCTTGTAACTGTGCAAA
TCAATGGAAAGTCAATTTACTAGATTGGTAAGACTCGTTGAACTGCAGGA
CAGACGGATACAAAGCATGGTTTGGAGGATGTCTACTACCGCAATACATA
TTTTGGAGTTGGAACATATTTACATCCTCGCTTACCTCAACGTTTTTTGC
ATTGGGATTATCACCATGGAAATGAAATCATAACAAACATGAAAAAATAC
TTTCAAAACTTTCACGCATCAATATTTAGTAAAACCAAGGAAATTTGATA
AATCCGATGACAATATCATACGATTGAAGCTCTCTCATTCGATCTTCTAC
TATTCGATTGATAGGCTCCATTATTCGATGATATTGAAATTCAACGTCAA
AAAGAAACACTCATAAACGACGCTCTGCCATTCAATAAGCTCCCTTATTC
GATGAAAATCGAATAAGAGAGCGTCAACTTACGAAGATTCTTTGATAAAA
CTCAACGAAAAAAATCTGTTGAGTCAACTTCCGTGCTACTAACTATTTTT
CTAAAAATATTTTCTAACGGCCACATGGTTATTATTTTTCACCAACGCGC
GTGCGAATTGGGATGATGAAGAAGTCGAGAAACATCCACCTACGGCTGCT
CTTAACCGCAAATTTATTAATTGCGACCGTTAGAAAGTTTGTGAAATATT
GCACAACTCAATGTTGGCTTTATTACAAAGATTGGCTTCG Coding sequence (CDS) from alignment at sc0000039:107405..110744- >TCONS_00004098 ID=TCONS_00004098|Name=TCONS_00004098|organism=Clytia hemisphaerica|type=CDS|length=3108bp|location=Sequence derived from alignment at sc0000039:107405..110744- (Clytia hemisphaerica) AGTTTGTACAATTGATGTTGAACGACCATGACGAGGGAGGCTAGGCATTT AGTGTTTTTGACCCTGACAACGAAGGTTTCATTGACGTTCAAGAACTTCG TGAAATCATGCAGCGAGATGAAGAGAATTTGACTGAAAAAGAGATCAAAG AGATTTTATCAGTGGTCGACCAAGATGGAAATGGAAGAGTGGAATATAGT GTTAGTCTCAAAAATGGATCAAGAATACGTGGAAGAATTGAAAGCAGCTT TCGAACACGCTGACATCAATGATAGTGGTAATATCCAAACAAGTGAACTG GTTATTCTTCTGAAGAATCTGGGCGTGAACGTCGCTGATACTGAAATGCA GGACATTGTCAACGAGTTTGATTTCAATGGAACTGGTGCTATTGATTTCA ATGAGTTTCTTCAATTCATGGCGAGAAGAGATGAATGGAGATGTGAAGAA GATATCAAAATTATGGATAAAACTACAATAGAGCTTGACACTTCTAAGGT GCAGGAAAATCCGAATGCCATTGGAATGGGGGAAATGACCACACCAAAAC TGCAAGATGAAAATCAAACTCCCTCATTGGTTGACAGGGAAAAAAAGAAG ATTTCAAGGGGGAAAGAAAAAATGGGGTCAAAACAAAGAAAAAGCATTAA GCTGAAGGAGAATGTTGATGAAGTTGTTGCACCATCGCCAAAGAAGAAAA TTGATAATGTCGCTGATGAAAATGATCGAATAAAGAAGAAAATACTTGAA TTGACGTTTAGTCGTGACACAGGAGAGAGTTTGTACAATTGATGTTGAAC GACCATGACGAGGGAGGCTAGGCATTTAGTGTTTTTGACCCTGACAACGA AGGTTTCATTGACGTTCAAGAACTTCGTGAAATCATGCAGCGAGATGAAG AGAATTTGACTGAAAAAGAGATCAAAGAGATTTTATCAGTGGTCGACCAA GATGGAAATGGAAGAGTGGAATATAGTGTTAGTCTCAAAAATGGATCAAG AATACGTGGAAGAATTGAAAGCAGCTTTCGAACACGCTGACATCAATGAT AGTGGTAATATCCAAACAAGTGAACTGGTTATTCTTCTGAAGAATCTGGG CGTGAACGTCGCTGATACTGAAATGCAGGACATTGTCAACGAGTTTGATT TCAATGGAACTGGTGCTATTGATTTCAATGAGTTTCTTCAATTCATGGCG AGAAGAGATGAATGGAGATGTGAAGAAGATATCAAAATTATGGATAAAAC TACAATAGAGCTTGACACTTCTAAGGTGCAGGAAAATCCGAATGCCATTG GAATGGGGGAAATGACCACACCAAAACTGCAAGATGAAAATCAAACTCCC TCATTGGTTGACAGGGAAAAAAAGAAGATTTCAAGGGGGAAAGAAAAAAT GGGGTCAAAACAAAGAAAAAGCATTAAGCTGAAGGAGAATGTTGATGAAG TTGTTGCACCATCGCCAAAGAAGAAAATTGATAATGTCGCTGATGAAAAT GATCGAATAAAGAAGAAAATACTTGAATTGACGTTTAGTCGTGACACAGG AGAGAGTTTGTACAATTGATGTTGAACGACCATGACGAGGGAGGCTAGGC ATTTAGTGTTTTTGACCCTGACAACGAAGGTTTCATTGACGTTCAAGAAC TTCGTGAAATCATGCAGCGAGATGAAGAGAATTTGACTGAAAAAGAGATC AAAGAGATTTTATCAGTGGTCGACCAAGATGGAAATGGAAGAGTGGAATA TAGTGTTAGTCTCAAAAATGGATCAAGAATACGTGGAAGAATTGAAAGCA GCTTTCGAACACGCTGACATCAATGATAGTGGTAATATCCAAACAAGTGA ACTGGTTATTCTTCTGAAGAATCTGGGCGTGAACGTCGCTGATACTGAAA TGCAGGACATTGTCAACGAGTTTGATTTCAATGGAACTGGTGCTATTGAT TTCAATGAGTTTCTTCAATTCATGGCGAGAAGAGATGAATGGAGATGTGA AGAAGATATCAAAATTATGGATAAAACTACAATAGAGCTTGACACTTCTA AGGTGCAGGAAAATCCGAATGCCATTGGAATGGGGGAAATGACCACACCA AAACTGCAAGATGAAAATCAAACTCCCTCATTGGTTGACAGGGAAAAAAA GAAGATTTCAAGGGGGAAAGAAAAAATGGGGTCAAAACAAAGAAAAAGCA TTAAGCTGAAGGAGAATGTTGATGAAGTTGTTGCACCATCGCCAAAGAAG AAAATTGATAATGTCGCTGATGAAAATGATCGAATAAAGAAGAAAATACT TGAATTGACGTTTAGTCGTGACACAGGAGAGAGTTTGTACAATTGATGTT GAACGACCATGACGAGGGAGGCTAGGCATTTAGTGTTTTTGACCCTGACA ACGAAGGTTTCATTGACGTTCAAGAACTTCGTGAAATCATGCAGCGAGAT GAAGAGAATTTGACTGAAAAAGAGATCAAAGAGATTTTATCAGTGGTCGA CCAAGATGGAAATGGAAGAGTGGAATATAGTGTTAGTCTCAAAAATGGAT CAAGAATACGTGGAAGAATTGAAAGCAGCTTTCGAACACGCTGACATCAA TGATAGTGGTAATATCCAAACAAGTGAACTGGTTATTCTTCTGAAGAATC TGGGCGTGAACGTCGCTGATACTGAAATGCAGGACATTGTCAACGAGTTT GATTTCAATGGAACTGGTGCTATTGATTTCAATGAGTTTCTTCAATTCAT GGCGAGAAGAGATGAATGGAGATGTGAAGAAGATATCAAAATTATGGATA AAACTACAATAGAGCTTGACACTTCTAAGGTGCAGGAAAATCCGAATGCC ATTGGAATGGGGGAAATGACCACACCAAAACTGCAAGATGAAAATCAAAC TCCCTCATTGGTTGACAGGGAAAAAAAGAAGATTTCAAGGGGGAAAGAAA AAATGGGGTCAAAACAAAGAAAAAGCATTAAGCTGAAGGAGAATGTTGAT GAAGTTGTTGCACCATCGCCAAAGAAGAAAATTGATAATGTCGCTGATGA AAATGATCGAATAAAGAAGAAAATACTTGAATTGACGTTTAGTCGTGACA CAGGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004098-exon-sc0000039-1575043694:110278..110744 | TCONS_00004098-exon-sc0000039-1575043694:110278..110744 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1575043694:109213..109473 | TCONS_00004098-exon-sc0000039-1575043694:109213..109473 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1575043694:108615..108771 | TCONS_00004098-exon-sc0000039-1575043694:108615..108771 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1575043694:107405..108268 | TCONS_00004098-exon-sc0000039-1575043694:107405..108268 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1510915933:110278..110744 | TCONS_00004098-exon-sc0000039-1510915933:110278..110744 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1510915933:109213..109473 | TCONS_00004098-exon-sc0000039-1510915933:109213..109473 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1510915933:108615..108771 | TCONS_00004098-exon-sc0000039-1510915933:108615..108771 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1510915933:107405..108268 | TCONS_00004098-exon-sc0000039-1510915933:107405..108268 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1491911889:110278..110744 | TCONS_00004098-exon-sc0000039-1491911889:110278..110744 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1491911889:109213..109473 | TCONS_00004098-exon-sc0000039-1491911889:109213..109473 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1491911889:108615..108771 | TCONS_00004098-exon-sc0000039-1491911889:108615..108771 | Clytia hemisphaerica | exon |
TCONS_00004098-exon-sc0000039-1491911889:107405..108268 | TCONS_00004098-exon-sc0000039-1491911889:107405..108268 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000039 | supercontig | sc0000039:107405..110744 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00004098 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.098e-30 Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 3
Query: 468 LVSKMDQEYVEELKAAFEHADINDSGNIQTSELVILLKNLGVNVADTEMQDIVNEFDFNGTGAIDFNEFLQFMARR-DEWRCEEDIKIAFSVFDPDNEGFIDVQELREIMQRDEENLTEKEIKEILSVVDQDGNGRVEYSEFVQLM 902
+ ++ +E + E K AF D + G I T EL ++++LG N + E+QD++NE D +G G IDF EFL MAR+ + EE+I+ AF VFD D G+I ELR +M E LT++E+ E++ D DG+G+V Y EFVQ+M
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
|