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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004089 ID=TCONS_00004089|Name=TCONS_00004089|organism=Clytia hemisphaerica|type=transcript|length=2536bpRun BLAST on NCBI protein sequence of TCONS_00004089-protein >TCONS_00004089-protein ID=TCONS_00004089-protein|Name=TCONS_00004089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=786bp MDSGKSSPSNLVRSQSLRLSNFNRTSLVRRNQSVSAKQVKFFRNGDQYFSRun BLAST on NCBI transcript from alignment at sc0000039:1..22443- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004089 ID=TCONS_00004089|Name=TCONS_00004089|organism=Clytia hemisphaerica|type=transcript|length=22443bp|location=Sequence derived from alignment at sc0000039:1..22443- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:1..22443- >TCONS_00004089 ID=TCONS_00004089|Name=TCONS_00004089|organism=Clytia hemisphaerica|type=CDS|length=30693bp|location=Sequence derived from alignment at sc0000039:1..22443- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004089 vs. Swiss-Prot (Human)
Match: DCLK1 (Serine/threonine-protein kinase DCLK1 OS=Homo sapiens GN=DCLK1 PE=1 SV=2) HSP 1 Score: 476.863 bits (1226), Expect = 2.005e-155 Identity = 265/608 (43.59%), Postives = 375/608 (61.68%), Query Frame = 1
Query: 184 AKQVKFFRNGDQYFSGLRLAVSIDRYKEFESLLTELSSKL----NLPTGAVRYLFNADDGSLVSDVSQLQNGISYVCSSSASFRQIEGGYGKLV-PNWSNIKRSRNIYRPLKVLGNIENS-FRLDSSKDFIKPKLVTVIRNGKPPQRKVTLLLNNKTAISLDQVLDQLSAKGSL--GKVDKLHTTSGKPIRALRDLFDDTTVFIALSTNEKFPDDGIELDPNSYRI---TPYREMKKSNQMAV-------RRSNSLRHNMRYKDENENMSLSNIRNLKNGALPKHALSARQSVQPRIRTTSRKEEQK----NKEELYPTSVFASDSESDCEYDVYSMFGIKREKHSVHSQYKIGRIIGDGNFAIVRECRDRKTQKPFALKIINKAKVKGKEHMIENEILILRKISHPNIVKLHEEFETPKEIYLVMELVPGGDLFDAIVDNTRFSEPESAYMVHDLASAILYLHELNIVHRDVKPENLLIVNREDGRKSIKLADFGLSIEVKSPMFLVCGTPTYVAPEILDESGYGLEVDNWAIGVICYILLCGFPPFRSTNHDQEELFDKILRGDYEYLKPFWNDVGDGPRDLIDRLLVVDASERYTAKEILQHFWI 1941
AK+V+F+RNGD+YF G+ A+S DR++ FE+LL +L+ L NLP G VR ++ D +S + QL G SYVC S F+++E Y K V PNWS ++ + R + L + S + +KDFI+PKLVT+IR+G P++ V +LLN KTA S +QVL ++ L G V +L+T GK + L+D F D +FIA + D LD + R+ T Y ++ S++ + RRS S S S++ L S P + RK+ + L T V +S E+D + S G + ++ +YK+GR IGDGNFA+V+EC +R T + +ALKII K+K +GKEHMI+NE+ ILR++ HPNIV L EE + P E+YLVMELV GGDLFDAI +++E +++ M+++LASAI YLH LNIVHRD+KPENLL+ +DG KS+KL DFGL+ V P++ VCGTPTYVAPEI+ E+GYGL+VD WA GVI YILLCGFPPFR + DQE LFD+IL G ++ P+W++V D ++LI +L+VD +R++A ++L+H W+
Sbjct: 56 AKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQG-VRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFKKLE--YTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRENKDFIRPKLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCLQDFFGDDDIFIACGPEKFRYQDDFLLDESECRVVKSTSYTKIASSSRRSTTKSPGPSRRSKS------------PASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQRSSQHGGSSTSLASTKVCSSMDENDGPGEEVSEEGFQIPA-TITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKHPNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSLNIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATIVDGPLYTVCGTPTYVAPEIIAETGYGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKELITMMLLVDVDQRFSAVQVLEHPWV 647 The following BLAST results are available for this feature:
BLAST of TCONS_00004089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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