TCONS_00003963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003963
Unique NameTCONS_00003963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003963 ID=TCONS_00003963|Name=TCONS_00003963|organism=Clytia hemisphaerica|type=transcript|length=1073bp
cccttcttcacttttttggaaggtgtcatccccccttaagaaaggggggg
ggtccgaactatGTGAGAAATCTAAATCATTGCAGGTCGAGATAAAAgat
caaattttaaagatttaaaaggcCATTAATATAAGTAATCTCTCTAACAA
AATACCTATAAAGAATAACTTTCTAAATCCGTTTTGAATATTGCATTGAT
ATTTGATTTCATATCCAAGCATCGTTCCAAAAGTTCCGGTGAACGTGTTT
CATTGAATTTCTTGTGGAGTTCTGCATACCATTTTATCAACCATgataaa
tttttgatattatcagcatcaaaatCTTGTAACAGGTTTAATGATTCACT
GAAATCATGTTTTTGGAATTTGACGAAAGAGAAAATAGTTGATAATAGTG
AATCCAAATACAATGATTCGTCGTGAAGTTTGTCAACAGCATCAAAGTTT
CCAAGAGCTAAATTTATCAATGCTTTAGTAGAAATTAAACTGCGGTCTGC
ACTTTCGTCAACAATATATTTGATCCCATTTGATATTTGATCACAAACCA
TTAGAGCATCAGTGTATTTACCTTTCTTATACAAAAAGAAAGCTTTataa
tttagaaaattgaaaTGGTCAATAGGTGCTATGCAATCGTACATCTTATC
AATGTAATCTTcaaattctttaaaaacatTCTCTGCTTCatcaaatctct
tttgaaacaataaattgttactttttactttaaaatattTGATAACATCA
GTGGGATTGTCAAAGTCTTTAACGTTTAGTGTCTTTAAAAGCTCTTCCGT
AGGTACATGATCGTCAgcaattttggccatttttaatATAATTCGGGGAG
AGTaaactttctttttcaatactttttcAATAAATGTAGACCTTATTTTC
GAGGCTACTTCAACCATTCTACATCTTTGGTACAGCTCAGCCTGAGTCAA
TTTCCAATCGTATAGTTGTTCATGATCGACCTCCAGTTCTTTGTtatatt
cattttcaaattGTATTACTGTTGGGATAACTTGATCTTTAATGATATCA
TCTGAAAAAGTATCTACGCAACA
Run BLAST on NCBI

transcript from alignment at sc0000038:795310..796447-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003963 ID=TCONS_00003963|Name=TCONS_00003963|organism=Clytia hemisphaerica|type=transcript|length=1138bp|location=Sequence derived from alignment at sc0000038:795310..796447- (Clytia hemisphaerica)
CCCTTCTTCACTTTTTTGGAAGGTGTCATCCCCCCTTAAGAAAGGGGGGG
GGTCCGAACTATGTGAGAAATCTAAATCATTGCAGGTCGAGATAAAAGAT
CAAATTTTAAAGATTTAAAAGGCCATTAATATAAGTAATCTCTCTAACAA
AATACCTATAAAGAATAACTTTCTAAATCCGTTTTGAATATTGCATTGAT
ATTTGATTTCATATCCAAGCATCGTTCCAAAAGTTCCGGTGAACGTGTTT
CATTGAATTTCTTGTGGAGTTCTGCATACCATTTTATCAACCATGATAAA
TTTTTGATATTATCAGCATCAAAATCTTGTAACAGGTTTAATGATTCACT
GAAATCATGTTTTTGGAATTTGACGAAAGAGAAAATAGTTGATAATAGTG
AATCCAAATACAATGATTCGTCGTGAAGTTTGTCAACAGCATCAAAGTTT
CCAAGAGCTAAATTTATCAATGCTTTAGTAGAAATTAAACTGCGGTCTGC
ACTTTCGTCAACATGATATTTGATCCCATTNTCAATGCTTTAGTAGAAAT
TAACCTGCGGTCTGCACTTTCGTCAACAATATATTTGATCCCATTTGATA
TTTGATCACAAACCATTAGAGCATCAGTGTATTTACCTTTCTTATACAAA
AAGAAAGCTTTATAATTTAGAAAATTGAAATGGTCAATAGGTGCTATGCA
ATCGTACATCTTATCAATGTAATCTTCAAATTCTTTAAAAACATTCTCTG
CTTCATCAAATCTCTTTTGAAACAATAAATTGTTACTTTTTACTTTAAAA
TATTTGATAACATCAGTGGGATTGTCAAAGTCTTTAACGTTTAGTGTCTT
TAAAAGCTCTTCCGTAGGTACATGATCGTCAGCAATTTTGGCCATTTTTA
ATATAATTCGGGGAGAGTAAACTTTCTTTTTCAATACTTTTTCAATAAAT
GTAGACCTTATTTTCGAGGCTACTTCAACCATTCTACATCTTTGGTACAG
CTCAGCCTGAGTCAATTTCCAATCGTATAGTTGTTCATGATCGACCTCCA
GTTCTTTGTTATATTCATTTTCAAATTGTATTACTGTTGGGATAACTTGA
TCTTTAATGATATCATCTGAAAAAGTATCTACGCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002214XLOC_002214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003963-exon-sc0000038-1575043694:795936..796447TCONS_00003963-exon-sc0000038-1575043694:795936..796447Clytia hemisphaericaexon
TCONS_00003963-exon-sc0000038-1575043694:795310..795870TCONS_00003963-exon-sc0000038-1575043694:795310..795870Clytia hemisphaericaexon
TCONS_00003963-exon-sc0000038-1510915933:795936..796447TCONS_00003963-exon-sc0000038-1510915933:795936..796447Clytia hemisphaericaexon
TCONS_00003963-exon-sc0000038-1510915933:795310..795870TCONS_00003963-exon-sc0000038-1510915933:795310..795870Clytia hemisphaericaexon
TCONS_00003963-exon-sc0000038-1491911889:795936..796447TCONS_00003963-exon-sc0000038-1491911889:795936..796447Clytia hemisphaericaexon
TCONS_00003963-exon-sc0000038-1491911889:795310..795870TCONS_00003963-exon-sc0000038-1491911889:795310..795870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:795310..796447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.48006	4.35281	1.8911	1.86156	7.67719	4.28094	9.2373	9.56719	4.66698	6.15737	7.9758	6.06464	4.88703	4.64167	6.69197	8.14962	7.40474	7.21272	4.86002	4.67173	12.7466	10.2425	7.55228	9.39901	5.33229	6.64035	10.2974	5.63556	7.67351	6.62551
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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