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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003963 ID=TCONS_00003963|Name=TCONS_00003963|organism=Clytia hemisphaerica|type=transcript|length=1073bp cccttcttcacttttttggaaggtgtcatccccccttaagaaaggggggg ggtccgaactatGTGAGAAATCTAAATCATTGCAGGTCGAGATAAAAgat caaattttaaagatttaaaaggcCATTAATATAAGTAATCTCTCTAACAA AATACCTATAAAGAATAACTTTCTAAATCCGTTTTGAATATTGCATTGAT ATTTGATTTCATATCCAAGCATCGTTCCAAAAGTTCCGGTGAACGTGTTT CATTGAATTTCTTGTGGAGTTCTGCATACCATTTTATCAACCATgataaa tttttgatattatcagcatcaaaatCTTGTAACAGGTTTAATGATTCACT GAAATCATGTTTTTGGAATTTGACGAAAGAGAAAATAGTTGATAATAGTG AATCCAAATACAATGATTCGTCGTGAAGTTTGTCAACAGCATCAAAGTTT CCAAGAGCTAAATTTATCAATGCTTTAGTAGAAATTAAACTGCGGTCTGC ACTTTCGTCAACAATATATTTGATCCCATTTGATATTTGATCACAAACCA TTAGAGCATCAGTGTATTTACCTTTCTTATACAAAAAGAAAGCTTTataa tttagaaaattgaaaTGGTCAATAGGTGCTATGCAATCGTACATCTTATC AATGTAATCTTcaaattctttaaaaacatTCTCTGCTTCatcaaatctct tttgaaacaataaattgttactttttactttaaaatattTGATAACATCA GTGGGATTGTCAAAGTCTTTAACGTTTAGTGTCTTTAAAAGCTCTTCCGT AGGTACATGATCGTCAgcaattttggccatttttaatATAATTCGGGGAG AGTaaactttctttttcaatactttttcAATAAATGTAGACCTTATTTTC GAGGCTACTTCAACCATTCTACATCTTTGGTACAGCTCAGCCTGAGTCAA TTTCCAATCGTATAGTTGTTCATGATCGACCTCCAGTTCTTTGTtatatt cattttcaaattGTATTACTGTTGGGATAACTTGATCTTTAATGATATCA TCTGAAAAAGTATCTACGCAACA Run BLAST on NCBI transcript from alignment at sc0000038:795310..796447- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003963 ID=TCONS_00003963|Name=TCONS_00003963|organism=Clytia hemisphaerica|type=transcript|length=1138bp|location=Sequence derived from alignment at sc0000038:795310..796447- (Clytia hemisphaerica) CCCTTCTTCACTTTTTTGGAAGGTGTCATCCCCCCTTAAGAAAGGGGGGG
GGTCCGAACTATGTGAGAAATCTAAATCATTGCAGGTCGAGATAAAAGAT
CAAATTTTAAAGATTTAAAAGGCCATTAATATAAGTAATCTCTCTAACAA
AATACCTATAAAGAATAACTTTCTAAATCCGTTTTGAATATTGCATTGAT
ATTTGATTTCATATCCAAGCATCGTTCCAAAAGTTCCGGTGAACGTGTTT
CATTGAATTTCTTGTGGAGTTCTGCATACCATTTTATCAACCATGATAAA
TTTTTGATATTATCAGCATCAAAATCTTGTAACAGGTTTAATGATTCACT
GAAATCATGTTTTTGGAATTTGACGAAAGAGAAAATAGTTGATAATAGTG
AATCCAAATACAATGATTCGTCGTGAAGTTTGTCAACAGCATCAAAGTTT
CCAAGAGCTAAATTTATCAATGCTTTAGTAGAAATTAAACTGCGGTCTGC
ACTTTCGTCAACATGATATTTGATCCCATTNTCAATGCTTTAGTAGAAAT
TAACCTGCGGTCTGCACTTTCGTCAACAATATATTTGATCCCATTTGATA
TTTGATCACAAACCATTAGAGCATCAGTGTATTTACCTTTCTTATACAAA
AAGAAAGCTTTATAATTTAGAAAATTGAAATGGTCAATAGGTGCTATGCA
ATCGTACATCTTATCAATGTAATCTTCAAATTCTTTAAAAACATTCTCTG
CTTCATCAAATCTCTTTTGAAACAATAAATTGTTACTTTTTACTTTAAAA
TATTTGATAACATCAGTGGGATTGTCAAAGTCTTTAACGTTTAGTGTCTT
TAAAAGCTCTTCCGTAGGTACATGATCGTCAGCAATTTTGGCCATTTTTA
ATATAATTCGGGGAGAGTAAACTTTCTTTTTCAATACTTTTTCAATAAAT
GTAGACCTTATTTTCGAGGCTACTTCAACCATTCTACATCTTTGGTACAG
CTCAGCCTGAGTCAATTTCCAATCGTATAGTTGTTCATGATCGACCTCCA
GTTCTTTGTTATATTCATTTTCAAATTGTATTACTGTTGGGATAACTTGA
TCTTTAATGATATCATCTGAAAAAGTATCTACGCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003963-exon-sc0000038-1575043694:795936..796447 | TCONS_00003963-exon-sc0000038-1575043694:795936..796447 | Clytia hemisphaerica | exon |
TCONS_00003963-exon-sc0000038-1575043694:795310..795870 | TCONS_00003963-exon-sc0000038-1575043694:795310..795870 | Clytia hemisphaerica | exon |
TCONS_00003963-exon-sc0000038-1510915933:795936..796447 | TCONS_00003963-exon-sc0000038-1510915933:795936..796447 | Clytia hemisphaerica | exon |
TCONS_00003963-exon-sc0000038-1510915933:795310..795870 | TCONS_00003963-exon-sc0000038-1510915933:795310..795870 | Clytia hemisphaerica | exon |
TCONS_00003963-exon-sc0000038-1491911889:795936..796447 | TCONS_00003963-exon-sc0000038-1491911889:795936..796447 | Clytia hemisphaerica | exon |
TCONS_00003963-exon-sc0000038-1491911889:795310..795870 | TCONS_00003963-exon-sc0000038-1491911889:795310..795870 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000038 | supercontig | sc0000038:795310..796447 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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