TCONS_00003912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003912
Unique NameTCONS_00003912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003912 ID=TCONS_00003912|Name=TCONS_00003912|organism=Clytia hemisphaerica|type=transcript|length=789bp
NAAAAAaagcaagaaagaaaaaattaaaaacagtttAAGATGGATTCAGC
TGCGCTGGAAAGATATTTTGAAGAAgcaatgattttcttttcaaggACGG
ACGTGGTTATAAGTGTTTTCACCACGTTGATTGTGTCATTTCTGACGTTG
CGTTACTTGTCCAGTAAAGAGGGGATCGAAATCCAAGAACTGGAATATAA
AATACGAGTAAGAAANgATGGTGAaactgaagaaaatgaagataaagACC
AAGAAAATAAAGAGAAAGAGGAAGGCTTAGGGGATAATGATGACGATATA
GAGGAGATCAAAAGAAATTCGGATTGTGAAGAagataaagaagaagaaga
cgTGGAAGAATTGAAAAGACGCGTCAAATTGTTGGATTCTGATGACGTCG
AAATGATCAAAAAAGGTGCTCACCTCGACACGAAAGACCCGGCCGCAGTG
AAACATTACGTTCAAGAAATGCGCTCCATGAGCTACAAAGGAAAACAACT
CGATGATACTGAAAAAGAACGAGAAGAAGAAGTAAGACAACGTCAACTGG
CGCAAATCTTTTCACTGATGAACCAACAAAAGGAGAAGTTTGGAGAGACC
AGCATTGATGACCTCAAACAACAGATGAATATGTATCAATAATGGATAGT
GGTGCAAGATATTTATTTGACTCGTTTAGTCGTAGTTGTAGACTATTTTC
ACGGTCAAAACTAATGacgggtaatcaggaccactactctcgggtaccta
atagccggggggtttggaataagcgcggggggggggggg
Run BLAST on NCBI

protein sequence of TCONS_00003912-protein

>TCONS_00003912-protein ID=TCONS_00003912-protein|Name=TCONS_00003912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MDSAALERYFEEAMIFFSRTDVVISVFTTLIVSFLTLRYLSSKEGIEIQE
LEYKIRVRXDGETEENEDKDQENKEKEEGLGDNDDDIEEIKRNSDCEEDK
EEEDVEELKRRVKLLDSDDVEMIKKGAHLDTKDPAAVKHYVQEMRSMSYK
GKQLDDTEKEREEEVRQRQLAQIFSLMNQQKEKFGETSIDDLKQQMNMYQ
Run BLAST on NCBI

transcript from alignment at sc0000038:594329..598975+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003912 ID=TCONS_00003912|Name=TCONS_00003912|organism=Clytia hemisphaerica|type=transcript|length=4647bp|location=Sequence derived from alignment at sc0000038:594329..598975+ (Clytia hemisphaerica)
NAAAAAaagcaagaaagaaaaaattaaaaacagtttAAGATGGATTCAGC
TGCGCTGGAAAGATATTTTGAAGAAgcaatgattttcttttcaaggACGG
ACGTGGTTATAAGTGTTTTCACCACGTTGATTGTGTCATTTCTGACGTTG
CGTTACTTGTCCAGTAAAGAGGGGATCGAAATCCAAGAACTGGAATATAA
AATACGAGTAAGAAANGCGTTACTTGTCCAGTAAAGAGGGGATCGAAATC
CAAGAACTAGAATATAAAATACGAGTAAGAAAGGTAAGTGCAGTATCGCT
ATTCCTTTAAATGATCATTGCACTGAGATGCATACAGTCATGTAAAGGTC
ACACCCAGCCGGTGGCGTACCCAGATCCACATGTACAGTAAACGcacgct
tattcgaacttctactatttgaatctttctagaattcgaactaattctca
gtaCTCATCGAGGAAAAACCCTCTTAAACACTTTCTATAGTTCGAATATC
TCtgtgatttgaaaaaataaggCTCTCGAGtttgaattagcgagagttaa
cCGTAAAAAGATTGCACTGAAATGCATACAATCAGGAGAACGTCACACCC
GGCCGATGGCGGAGCCAGAACCACACATATAAATTTTTCAACGGGTGCCA
ACAGCGGCTTCACCCGTTTGCAGATTAGCTGCTCAGAATCAAAGATTCtt
tatttgctaattttacTGGAACTTTGAGGTTGGATGAATGAATGcagttt
ttattaaaatttcgatgagattgacaatttattttttgaatgaaCATTAA
TCAGCAGTAACCCAGGATTGatttattatatattattgAGAATCCGTTGA
CCCAATTGTATACAAAACCAGCAATCATTTGGTACTATTTTTGCTATAGG
TTCACCAGTTAACTCCTATCTCGTCATATGTGGAAGAAGTTCATTTGACT
gatttaaagaaagaaaattcgtGCTGAGGATAAGTTTAAATAAGGCTCCC
TTAAAAtaccttttttccaattttcaggATGGTGAaactgaagaaaatga
agataaagACCAAGAAAATAAAGAGAAAGAGGAAGGTAAAACGAACCCCT
GTCTCGTATAATATGAACTCTGTTTCAAACACCCATGACTGTACTAAACG
AACCCCGTTGGAAAACCTCTGTTTCACCATTATTGAAAATTAACACCCAT
CATTATACTAACAAACAATGCCTGTCTCAACCACCCCTGTCTTCAAAGAA
CCCTGTTTCCAATAACCCTGTCTCCAATAACCCTGTCTCAAATGAGTCCT
TCTCAAGCAAACCCTGTTCTAGATACCCTTAAAACGGCCCTTTCTCAAAC
GGTTTGGATAGAAATGATGAAATTCAGACGATACCTAAAAAAAGATATGA
ACAAAGTGTTATCCTTACCAATAAAGTATAAGCCCGaggggctagaatcg
aatctccttggtaagatttgaagccaacaaatcctaccaaagttgcgcgg
cctagcgTGGCctgcctggtttttacacaaatcgcagattgaaatgaaaa
tttactgctaaatttcgaaaaaaagtaacactcgaaaacaaaagaattgc
tagattcaaaactgtcgtcaaaaatacggcgcatataaggcttcactttt
tcttgcctgagaaaggttagagattcgattctagcccttcgggcttatac
ttcatcgATCCTTACCCCACGAAGACATCAAAACAGTATGATTTTGGTTC
AACAACATTAAAGCTTGTTAACAAGGAGTTAACGTGATAattattcttta
ttttactTGTAAAATTTCGAGCAATAACGATAAACAGAGGAGATcaaacg
aaattttgaaaagatgtttgtttattttgttattttgaccctttgagaga
ctatttTTCCGATGTTAAACTCAAAACTACCAGATTTTATGACCCTTTGT
CGATTTTTGATACTTcgtaattttgggaccctttcagagactcaTTTACT
TtcagagactttcgagggtttaaaaaagggacccttatatATACCTGGCA
CCCATTTTGCCCAAGTATCCCCCGGAGGAGTTAACGGTTATTCTTTTTTG
TTCTCCTGCAAAGGCTTAGGGGATAATGATGACGATATAGAGGAGATCAA
AAGAAATTCGGATTGTGAAGAagataaagaagaagaagacgTGGAAGAAT
TGAAAAGACGCGTCAAATTGTTGGATTCTGATGACGTCGAAATGATCAAA
AAAGGTACCTTATTATTAACTAATCAAGTATTGCACCCTAGTGCaatggt
agagcatccagcaTAGCCCCCGGGGTAGGGGGCTCACTTTTTTGCCGAAA
AAggcttttttgaaaactttcagttattttttcatgaattcttttcaaat
tgaCTCTAAAAAGGTCCTAAAAAGGTCCTAAAAAAGCGCTTTCCCCTTTC
AACccactcaaaattcaaaatttacccAACCGGTGGGCAACATCAATTTA
CTCCAATATTTAGCCCCCTCACTTCAGCCCTCAAGCTTGGGGCCCTGGCa
ttcggctacggtgcgcaaggaggtcgtgggttcaatccccagccgggtca
taatCAAAGACTTTGTACTTATTACAAAAATCATACTTGATGCCTCTCAA
CTTGATGCTCAGTAATTAAGAGAAAGATCAAGAGTAACATGGAGAATAAG
TGGCGCCCTCTCCTACCTTCGGGTAAATAGCTATCGAAATAGGAGCCTTC
TGGTTGCCtctgactgcggtcgcagacttacttactaatCAAGTATTTAA
ACGCGGGAAAAATGAGTGCTGCAATTCATTGACGCGAAAAACAGAGTTTT
CGAGAATTGCCttggctaaaattttgttaCGGGAGTGTAACCAATTTGCG
TTAATAACTTTTGTAGTAAGGTACCAAAGTGTAAAGATCTAGTTACTTCA
TTTTAGGCGGAAGGCTTTTTACCTTGTTTTCCCtcaatttttgacgattt
tAGCCCTTCCGTTCCCAATCGTTTCATTCACTGATAAATAAACTCGCTAG
TCAAGACATGCGGTATTCCTGAAATGCTTCTGTCCGCGTTATTGATATCC
TTTATATTGAGCGATACTCCTtttgaaaaaggtattttttggTTTTCCTT
TGAGAAGATTCTGTCGTGAAAGAAGTTCTATTGCTGGCAGACTGAGAAGA
AGACGGTTTTTCGATTGCTTTCGATTCTTCTAACCTTGGCAATCTATGTA
ACACCAAATCTCAACTCTAACTCATTTGACCAATTTCAGGTGCTCACCTC
GACACGAAAGACCCGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTC
CATGAGCTACAAAGGAAAACAACTCGATGATACTGAAAAAGAACGAGAAG
AAGAGTAAGTTATTAGCAATGCTGCTTTTTGCCTCGCTGCATAGCAAACT
AATCGATGGGAGCAGCTATATTCAGTTTGCTAGGTAACAGGTACGACAAA
AGTGGAGGAGGAAAAAAAGGTTCTATTATATTCTATTTCACCCATTGCAA
CTGACATAATATGATATCGTAGTTTGCACACACCATCTCTGGTATGTTTT
GGTATAGGGGGTGCGCAACGTGTAGAAAATTTCCGTTCGAGAGTCACACC
CATATTGTGTTTTTgtcttttagaaactttgatgTAAGTTTTAGAGGTCT
TTTAATTTCATTAGGTtcgaattaaaaatttgaatggctagagGGTAACA
CAATCATTCAATCGTaacctttttaagaaaattgaaacaggttaccACAG
GTtactctcggacgggaattgtAAATACACGAttagcatcccctatatca
aaacatatcagaggagATGCCTGCAGCCTAAAGAGAGCGCTCAATTTTCC
CTTAAGAGTGCCGCGATCCATACCGCTCTGTTTTTAATTGTATCCCAGCC
GAAAAAAAGTCCAGATTGGTATTAGTTTCAAAATAGTGAGAGCTACAATg
ttcttcgtgtgcacagacttGTTAGAAGCAAACTAACTTATTGAAATGTT
CAATTAGGtctataagatcacaaaaacgagtggtaagaacattttttgac
aattttgatgGTCCCCATgcgacgtcatcacttttgtgAGGCTTGAAAAT
GAAcgtgaaaatcaatatttgagaagctataaaggaaaatagctcacaat
taaaaaatcatcgaaatcgaaaaatttttgtttcatttgaaaGAGGAGCG
GCTagggaacaaaaaatatcaCTACGGAAAACCTTGAATTTCTCCTGGAT
GTTTTTAGAACATACTGTGGTGTCTCTCACTAAAAGGTTTGTCTATATAC
TGTagttctaaatatttttttccatatTCTAATTCTAGAGTAAGACAACG
TCAACTGGCGCAAATCTTTTCACTGATGAACCAACAAAAGGAGAAGTTTG
GAGAGACCAGCATTGATGACCTCAAACAACAGATGAATATGTATCAATAA
TGGATAGTGGTGCAAGATATTTATTTGACTCGTTTAGTCGTAGTTGTAGA
CTATTTTCACGGTCAAAACTAATGacgggtaatcaggaccactactctcg
ggtacctaatagccggggggtttggaataagcgcggggggggggggg

Coding sequence (CDS) from alignment at sc0000038:594329..598975+

>TCONS_00003912 ID=TCONS_00003912|Name=TCONS_00003912|organism=Clytia hemisphaerica|type=CDS|length=3015bp|location=Sequence derived from alignment at sc0000038:594329..598975+ (Clytia hemisphaerica)
ATGGATTCAGCTGCGCTGGAAAGATATTTTGAAGAAgcaatgattttctt
ttcaaggACGGACGTGGTTATAAGTGTTTTCACCACGTTGATTGTGTCAT
TTCTGACGTTGCGTTACTTGTCCAGTAAAGAGGGGATCGAAATCCAAGAA
CTGGAATATAAAATACGAGTAAGAAANgATGGTGAaactgaagaaaatga
agataaagACCAAGAAAATAAAGAGAAAGAGGAAGGCTTAGGGGATAATG
ATGACGATATAGAGGAGATCAAAAGAAATTCGGATTGTGAAGAagataaa
gaagaagaagacgTGGAAGAATTGAAAAGACGCGTCAAATTGTTGGATTC
TGATGACGTCGAAATGATCAAAAAAGGTGCTCACCTCGACACGAAAGACC
CGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTCCATGAGCTACAAA
GGAAAACAACTCGATGATACTGAAAAAGAACGAGAAGAAGAAGTAAGACA
ACGTCAACTGGCGCAAATCTTTTCACTGATGAACCAACAAAAGGAGAAGT
TTGGAGAGACCAGCATTGATGACCTCAAACAACAGATGAATATGTATCAA
TAAATGGATTCAGCTGCGCTGGAAAGATATTTTGAAGAAgcaatgatttt
cttttcaaggACGGACGTGGTTATAAGTGTTTTCACCACGTTGATTGTGT
CATTTCTGACGTTGCGTTACTTGTCCAGTAAAGAGGGGATCGAAATCCAA
GAACTGGAATATAAAATACGAGTAAGAAANgATGGTGAaactgaagaaaa
tgaagataaagACCAAGAAAATAAAGAGAAAGAGGAAGGCTTAGGGGATA
ATGATGACGATATAGAGGAGATCAAAAGAAATTCGGATTGTGAAGAagat
aaagaagaagaagacgTGGAAGAATTGAAAAGACGCGTCAAATTGTTGGA
TTCTGATGACGTCGAAATGATCAAAAAAGGTGCTCACCTCGACACGAAAG
ACCCGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTCCATGAGCTAC
AAAGGAAAACAACTCGATGATACTGAAAAAGAACGAGAAGAAGAAGTAAG
ACAACGTCAACTGGCGCAAATCTTTTCACTGATGAACCAACAAAAGGAGA
AGTTTGGAGAGACCAGCATTGATGACCTCAAACAACAGATGAATATGTAT
CAATAAATGGATTCAGCTGCGCTGGAAAGATATTTTGAAGAAgcaatgat
tttcttttcaaggACGGACGTGGTTATAAGTGTTTTCACCACGTTGATTG
TGTCATTTCTGACGTTGCGTTACTTGTCCAGTAAAGAGGGGATCGAAATC
CAAGAACTGGAATATAAAATACGAGTAAGAAANgATGGTGAaactgaaga
aaatgaagataaagACCAAGAAAATAAAGAGAAAGAGGAAGGCTTAGGGG
ATAATGATGACGATATAGAGGAGATCAAAAGAAATTCGGATTGTGAAGAa
gataaagaagaagaagacgTGGAAGAATTGAAAAGACGCGTCAAATTGTT
GGATTCTGATGACGTCGAAATGATCAAAAAAGGTGCTCACCTCGACACGA
AAGACCCGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTCCATGAGC
TACAAAGGAAAACAACTCGATGATACTGAAAAAGAACGAGAAGAAGAAGT
AAGACAACGTCAACTGGCGCAAATCTTTTCACTGATGAACCAACAAAAGG
AGAAGTTTGGAGAGACCAGCATTGATGACCTCAAACAACAGATGAATATG
TATCAATAAATGGATTCAGCTGCGCTGGAAAGATATTTTGAAGAAgcaat
gattttcttttcaaggACGGACGTGGTTATAAGTGTTTTCACCACGTTGA
TTGTGTCATTTCTGACGTTGCGTTACTTGTCCAGTAAAGAGGGGATCGAA
ATCCAAGAACTGGAATATAAAATACGAGTAAGAAANgATGGTGAaactga
agaaaatgaagataaagACCAAGAAAATAAAGAGAAAGAGGAAGGCTTAG
GGGATAATGATGACGATATAGAGGAGATCAAAAGAAATTCGGATTGTGAA
GAagataaagaagaagaagacgTGGAAGAATTGAAAAGACGCGTCAAATT
GTTGGATTCTGATGACGTCGAAATGATCAAAAAAGGTGCTCACCTCGACA
CGAAAGACCCGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTCCATG
AGCTACAAAGGAAAACAACTCGATGATACTGAAAAAGAACGAGAAGAAGA
AGTAAGACAACGTCAACTGGCGCAAATCTTTTCACTGATGAACCAACAAA
AGGAGAAGTTTGGAGAGACCAGCATTGATGACCTCAAACAACAGATGAAT
ATGTATCAATAAATGGATTCAGCTGCGCTGGAAAGATATTTTGAAGAAgc
aatgattttcttttcaaggACGGACGTGGTTATAAGTGTTTTCACCACGT
TGATTGTGTCATTTCTGACGTTGCGTTACTTGTCCAGTAAAGAGGGGATC
GAAATCCAAGAACTGGAATATAAAATACGAGTAAGAAANgATGGTGAaac
tgaagaaaatgaagataaagACCAAGAAAATAAAGAGAAAGAGGAAGGCT
TAGGGGATAATGATGACGATATAGAGGAGATCAAAAGAAATTCGGATTGT
GAAGAagataaagaagaagaagacgTGGAAGAATTGAAAAGACGCGTCAA
ATTGTTGGATTCTGATGACGTCGAAATGATCAAAAAAGGTGCTCACCTCG
ACACGAAAGACCCGGCCGCAGTGAAACATTACGTTCAAGAAATGCGCTCC
ATGAGCTACAAAGGAAAACAACTCGATGATACTGAAAAAGAACGAGAAGA
AGAAGTAAGACAACGTCAACTGGCGCAAATCTTTTCACTGATGAACCAAC
AAAAGGAGAAGTTTGGAGAGACCAGCATTGATGACCTCAAACAACAGATG
AATATGTATCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002191XLOC_002191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003912-exon-sc0000038-1491911889:594329..594544TCONS_00003912-exon-sc0000038-1491911889:594329..594544Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1510915933:594329..594544TCONS_00003912-exon-sc0000038-1510915933:594329..594544Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1575043694:594329..594544TCONS_00003912-exon-sc0000038-1575043694:594329..594544Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1491911889:595356..595413TCONS_00003912-exon-sc0000038-1491911889:595356..595413Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1510915933:595356..595413TCONS_00003912-exon-sc0000038-1510915933:595356..595413Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1575043694:595356..595413TCONS_00003912-exon-sc0000038-1575043694:595356..595413Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1491911889:596442..596582TCONS_00003912-exon-sc0000038-1491911889:596442..596582Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1510915933:596442..596582TCONS_00003912-exon-sc0000038-1510915933:596442..596582Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1575043694:596442..596582TCONS_00003912-exon-sc0000038-1575043694:596442..596582Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1491911889:597618..597732TCONS_00003912-exon-sc0000038-1491911889:597618..597732Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1510915933:597618..597732TCONS_00003912-exon-sc0000038-1510915933:597618..597732Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1575043694:597618..597732TCONS_00003912-exon-sc0000038-1575043694:597618..597732Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1491911889:598717..598975TCONS_00003912-exon-sc0000038-1491911889:598717..598975Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1510915933:598717..598975TCONS_00003912-exon-sc0000038-1510915933:598717..598975Clytia hemisphaericaexon
TCONS_00003912-exon-sc0000038-1575043694:598717..598975TCONS_00003912-exon-sc0000038-1575043694:598717..598975Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003912-proteinTCONS_00003912-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:594329..598975 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.62535	2.92675	1.33311	2.03114	5.15729	3.63773	3.3375	0.554229	2.33449	0.921331	6.3664	4.73134	9.96848	6.87636	4.58625	6.77508	0	4.65679e-06	0	0.00035232	13.0543	10.9707	1.40825e-08	0.151416	0	9.21588e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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