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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003829 ID=TCONS_00003829|Name=TCONS_00003829|organism=Clytia hemisphaerica|type=transcript|length=2882bp
NNTTAGTACGCATACGATGAAATGTGCTACAAGTCTTAGTCCTGATGAAC
AGATCAGAGAAAGTTACGCGAAGTGTTTTGAGACAAACCCGAAAAGTGAC
CCCAACGTACAAGAGATTCTTGATGAGTTCGAAAGTGACACAGTTTTCAA
AGATGGTCATTATGAAATTAAGTTACCCTTCAAGGAGGAGATTACAAATT
TGGGAGACAACTACGCCAGAAGTAAGATTCGTTTGAAAAATATGGTTCAG
AAACAGTTCAAAGACAACccagaatttttgaaaacttatgatGAGATTTT
ACAACAACAGCTCTCCGCCGGGGTGATCGAAAAAGTTGAACATTACGAAA
TTGGTCAAACACATTACTTGCCGCACAGACCGGTAGTGAGAGAAGATAAA
CAATCTACGAAAGTGAGAATAGTATTTGATGCATCATGCAAAAGTTACAA
GGGAGGAGAAAGTTTAAATGACACTTTGAATCCTGGCCCGTCGATTACAG
AATTACTTGGAGATGTTTTATTGAGATTTCGTAGTTACAATTATGCATTT
ACGGCTGATATCGAGAAAGCCTTCCTTCAGATAGGAATTACACCAGAACA
CAGAGATTTTGTTCGTTTTATTTGGTTTGAAAACCCTCACAGTATCGAtt
acgaaaattttgaagaaaataaactttGTGAATATCGTTTTGCACGTGTT
TTATTTGGATTGAATGCATCCCCCTTTTTGTTACAAGCCACGTTAAACAA
ACATATCACAAACTGTACAGACTCTCTCGAAAACAAAGAGaagttgaaaa
attctttacatGTCGATGATATGACGTCAGGAGCTAACACAATTGAAGAA
GCTGTTGACTTTTATATGAGTTCAAAAAGAAACCTCCACGATGGAGGGTT
TAATTTGAGAAAGTTCAAAGCAAGCAATAGAGAACTAGAGAATATTGTTT
ATGATTTATTTCCTGAGGATAAAGAATTTTCATCTGAACAAAAGGTCCTA
GGTTTGAATTGGGACAGAAACAATGATACCgtttatttcaattttcgaga
gcTTCGTGAAAAATTCGTCGCCATGCCAACCAAACGTGCTATTTTACATA
ACATGGCTTCGATTTATGATCCTTTGGGACTGATAAGCCCACTTTTCGTT
TCGTTTAAAACTTTATTTCAAGATATCTGTGAGGAAAAATTTGACTGGGA
TGACATTTTACCAGATAGACTAACTGAGCGTTGGGAAAAAATTCTCCTTG
AATTtaacaaaattgacaaaatcgaAATTGATCGTCCCTATTGTATAGAG
AGTCTCCATGACAATATTAAAACAGTCGGAGCTCATATTTTCAGTGACGC
ATCCAAATATATGTTTGGAGCGGCAGTATATTTACGATTCGTATTGGAGT
CTGGTAGTGTAAAAACAGCCCTTGTTTCGTCCAAAAATCGAATTATATCT
GCTAAAACCTTAAAGTCAAAACACAATACAACTCCCAGAAATGAATTAAA
TGGTATCCTTTTGGCAACTTCGCATGGTCCTGCGGTTATAGAAGCCCTTA
AGAACTCTTACAATATTTCTGAAACTTTCTACTGGACAGATTCGTCCATT
GCTTGTGCGTGGGTCCAGAATGAGAAAAAGAATGAGGACAGTTATGTAGA
GGATAGAGTGAAGAAAATTAAGACTGTCATTAAAAAGCCTCTATCCCACC
TAAAACTTGTACCTTCAGAGATTAATCCTTCTGACATTTTGACAAAGGTA
CATTACCCTCTCGGTCTTGCTCGTAATGAATTGTGGTTTTACGGACCTCA
GTTCTTGACTGAGAAGAAGAATGCCTGGCCAGATTTAAAACCAGGTTTTA
GTTTTAAAACTAATACAAATTCTGTTACAGCTACACCTGCCTCAACTGAT
TTGAGTGCAGCGAAAATCAATATTAGTGAAATTATTGATTACAAAAAGTT
TAATGATTTTAGTAAAACATCCCGAGTGTTAGCTTGGGCAATCCATTTCG
TGAGTAAAATCACGctcaagaaagaagaagaagatacaATAGAAACCaaa
caaataaataataaaacaaaacaaataatacaTAACAATAAAGATTGTGG
TGGTGTGTTATCAATTGTTGAATTGGAACTTGCAAGAAATCTATTGATTG
AAGATTCCCAGCGTGGTTTGGAGAATggcaaaaactttacaaatttgAAG
AAACAATTGGACTTGTTCCAAGACGAAAATGGTTTGTGGCGTTGTGGAGG
GAGGTTGAAAAACTCTGAGTTAACGTATGAACAAAAGCACCCCCTTCTTA
TAGACAGAAAACACCCAATAGCGAAAGTGATCATTCGAGAATCACATGCA
AACGTCATGCACAATGGAGTAAGTCAGACTCTTACAAACCTTCGAAAACG
CTATTGGATTACAAAACCAAGAAACTTAATCAAAACGGTGATCAAAGAAT
GCACCACATGCCGAAAACACGAGGGTAAACCGTATGGTTACCCAAACGAA
CCATCACTGCCGAGAGAACGAGTTACTGCAAACTAGGCTTACGAAAATAT
GGGCATAGATTATCTCGGACCAGTCTACGTGAAAGACATTTACGCAAAGA
ACAATGAAACCCACAAAGCCTGGACCGCCTTAACAACGTGTACAACAACG
AGGGCCGTCTACTTAGACCTCGTTTCAGACTGTTCCGGACCGACTTGTGT
TAACCTGTTAAAGAGATTGATTTCTACTCATGGCACGCCAAAAGTCATGA
TATCTGATAACGGGACTAATTTTATCTCAACAGACGtacaaaatttcatg
gcaaacaGAGGAACACTGTGGAAATTTAACATTGCAAAAGCTCCGTGGTA
TGGAGGCTTTTTTGAACGTCTTGTCCGATCCG Run BLAST on NCBI protein sequence of TCONS_00003829-protein >TCONS_00003829-protein ID=TCONS_00003829-protein|Name=TCONS_00003829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=844bp
XSTHTMKCATSLSPDEQIRESYAKCFETNPKSDPNVQEILDEFESDTVFK
DGHYEIKLPFKEEITNLGDNYARSKIRLKNMVQKQFKDNPEFLKTYDEIL
QQQLSAGVIEKVEHYEIGQTHYLPHRPVVREDKQSTKVRIVFDASCKSYK
GGESLNDTLNPGPSITELLGDVLLRFRSYNYAFTADIEKAFLQIGITPEH
RDFVRFIWFENPHSIDYENFEENKLCEYRFARVLFGLNASPFLLQATLNK
HITNCTDSLENKEKLKNSLHVDDMTSGANTIEEAVDFYMSSKRNLHDGGF
NLRKFKASNRELENIVYDLFPEDKEFSSEQKVLGLNWDRNNDTVYFNFRE
LREKFVAMPTKRAILHNMASIYDPLGLISPLFVSFKTLFQDICEEKFDWD
DILPDRLTERWEKILLEFNKIDKIEIDRPYCIESLHDNIKTVGAHIFSDA
SKYMFGAAVYLRFVLESGSVKTALVSSKNRIISAKTLKSKHNTTPRNELN
GILLATSHGPAVIEALKNSYNISETFYWTDSSIACAWVQNEKKNEDSYVE
DRVKKIKTVIKKPLSHLKLVPSEINPSDILTKVHYPLGLARNELWFYGPQ
FLTEKKNAWPDLKPGFSFKTNTNSVTATPASTDLSAAKINISEIIDYKKF
NDFSKTSRVLAWAIHFVSKITLKKEEEDTIETKQINNKTKQIIHNNKDCG
GVLSIVELELARNLLIEDSQRGLENGKNFTNLKKQLDLFQDENGLWRCGG
RLKNSELTYEQKHPLLIDRKHPIAKVIIRESHANVMHNGVSQTLTNLRKR
YWITKPRNLIKTVIKECTTCRKHEGKPYGYPNEPSLPRERVTAN Run BLAST on NCBI transcript from alignment at sc0000031:51811..54692 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003829 ID=TCONS_00003829|Name=TCONS_00003829|organism=Clytia hemisphaerica|type=transcript|length=2882bp|location=Sequence derived from alignment at sc0000031:51811..54692 (Clytia hemisphaerica)
CGGATCGGACAAGACGTTCAAAAAAGCCTCCATACCACGGAGCTTTTGCA
ATGTTAAATTTCCACAGTGTTCCTCtgtttgccatgaaattttgtaCGTC
TGTTGAGATAAAATTAGTCCCGTTATCAGATATCATGACTTTTGGCGTGC
CATGAGTAGAAATCAATCTCTTTAACAGGTTAACACAAGTCGGTCCGGAA
CAGTCTGAAACGAGGTCTAAGTAGACGGCCCTCGTTGTTGTACACGTTGT
TAAGGCGGTCCAGGCTTTGTGGGTTTCATTGTTCTTTGCGTAAATGTCTT
TCACGTAGACTGGTCCGAGATAATCTATGCCCATATTTTCGTAAGCCTAG
TTTGCAGTAACTCGTTCTCTCGGCAGTGATGGTTCGTTTGGGTAACCATA
CGGTTTACCCTCGTGTTTTCGGCATGTGGTGCATTCTTTGATCACCGTTT
TGATTAAGTTTCTTGGTTTTGTAATCCAATAGCGTTTTCGAAGGTTTGTA
AGAGTCTGACTTACTCCATTGTGCATGACGTTTGCATGTGATTCTCGAAT
GATCACTTTCGCTATTGGGTGTTTTCTGTCTATAAGAAGGGGGTGCTTTT
GTTCATACGTTAACTCAGAGTTTTTCAACCTCCCTCCACAACGCCACAAA
CCATTTTCGTCTTGGAACAAGTCCAATTGTTTCTTcaaatttgtaaagtt
tttgccATTCTCCAAACCACGCTGGGAATCTTCAATCAATAGATTTCTTG
CAAGTTCCAATTCAACAATTGATAACACACCACCACAATCTTTATTGTTA
tgtattatttgttttgttttattatttatttgtttGGTTTCTATtgtatc
ttcttcttctttcttgagCGTGATTTTACTCACGAAATGGATTGCCCAAG
CTAACACTCGGGATGTTTTACTAAAATCATTAAACTTTTTGTAATCAATA
ATTTCACTAATATTGATTTTCGCTGCACTCAAATCAGTTGAGGCAGGTGT
AGCTGTAACAGAATTTGTATTAGTTTTAAAACTAAAACCTGGTTTTAAAT
CTGGCCAGGCATTCTTCTTCTCAGTCAAGAACTGAGGTCCGTAAAACCAC
AATTCATTACGAGCAAGACCGAGAGGGTAATGTACCTTTGTCAAAATGTC
AGAAGGATTAATCTCTGAAGGTACAAGTTTTAGGTGGGATAGAGGCTTTT
TAATGACAGTCTTAATTTTCTTCACTCTATCCTCTACATAACTGTCCTCA
TTCTTTTTCTCATTCTGGACCCACGCACAAGCAATGGACGAATCTGTCCA
GTAGAAAGTTTCAGAAATATTGTAAGAGTTCTTAAGGGCTTCTATAACCG
CAGGACCATGCGAAGTTGCCAAAAGGATACCATTTAATTCATTTCTGGGA
GTTGTATTGTGTTTTGACTTTAAGGTTTTAGCAGATATAATTCGATTTTT
GGACGAAACAAGGGCTGTTTTTACACTACCAGACTCCAATACGAATCGTA
AATATACTGCCGCTCCAAACATATATTTGGATGCGTCACTGAAAATATGA
GCTCCGACTGTTTTAATATTGTCATGGAGACTCTCTATACAATAGGGACG
ATCAATTtcgattttgtcaattttgttaAATTCAAGGAGAATTTTTTCCC
AACGCTCAGTTAGTCTATCTGGTAAAATGTCATCCCAGTCAAATTTTTCC
TCACAGATATCTTGAAATAAAGTTTTAAACGAAACGAAAAGTGGGCTTAT
CAGTCCCAAAGGATCATAAATCGAAGCCATGTTATGTAAAATAGCACGTT
TGGTTGGCATGGCGACGAATTTTTCACGAAgctctcgaaaattgaaataa
acGGTATCATTGTTTCTGTCCCAATTCAAACCTAGGACCTTTTGTTCAGA
TGAAAATTCTTTATCCTCAGGAAATAAATCATAAACAATATTCTCTAGTT
CTCTATTGCTTGCTTTGAACTTTCTCAAATTAAACCCTCCATCGTGGAGG
TTTCTTTTTGAACTCATATAAAAGTCAACAGCTTCTTCAATTGTGTTAGC
TCCTGACGTCATATCATCGACatgtaaagaatttttcaacttCTCTTTGT
TTTCGAGAGAGTCTGTACAGTTTGTGATATGTTTGTTTAACGTGGCTTGT
AACAAAAAGGGGGATGCATTCAATCCAAATAAAACACGTGCAAAACGATA
TTCACaaagtttattttcttcaaaattttcgtaaTCGATACTGTGAGGGT
TTTCAAACCAAATAAAACGAACAAAATCTCTGTGTTCTGGTGTAATTCCT
ATCTGAAGGAAGGCTTTCTCGATATCAGCCGTAAATGCATAATTGTAACT
ACGAAATCTCAATAAAACATCTCCAAGTAATTCTGTAATCGACGGGCCAG
GATTCAAAGTGTCATTTAAACTTTCTCCTCCCTTGTAACTTTTGCATGAT
GCATCAAATACTATTCTCACTTTCGTAGATTGTTTATCTTCTCTCACTAC
CGGTCTGTGCGGCAAGTAATGTGTTTGACCAATTTCGTAATGTTCAACTT
TTTCGATCACCCCGGCGGAGAGCTGTTGTTGTAAAATCTCatcataagtt
ttcaaaaattctggGTTGTCTTTGAACTGTTTCTGAACCATATTTTTCAA
ACGAATCTTACTTCTGGCGTAGTTGTCTCCCAAATTTGTAATCTCCTCCT
TGAAGGGTAACTTAATTTCATAATGACCATCTTTGAAAACTGTGTCACTT
TCGAACTCATCAAGAATCTCTTGTACGTTGGGGTCACTTTTCGGGTTTGT
CTCAAAACACTTCGCGTAACTTTCTCTGATCTGTTCATCAGGACTAAGAC
TTGTAGCACATTTCATCGTATGCGTACTAANN Coding sequence (CDS) from alignment at sc0000031:51811..54692 >TCONS_00003829 ID=TCONS_00003829|Name=TCONS_00003829|organism=Clytia hemisphaerica|type=CDS|length=2535bp|location=Sequence derived from alignment at sc0000031:51811..54692 (Clytia hemisphaerica)
CTAGTTTGCAGTAACTCGTTCTCTCGGCAGTGATGGTTCGTTTGGGTAAC
CATACGGTTTACCCTCGTGTTTTCGGCATGTGGTGCATTCTTTGATCACC
GTTTTGATTAAGTTTCTTGGTTTTGTAATCCAATAGCGTTTTCGAAGGTT
TGTAAGAGTCTGACTTACTCCATTGTGCATGACGTTTGCATGTGATTCTC
GAATGATCACTTTCGCTATTGGGTGTTTTCTGTCTATAAGAAGGGGGTGC
TTTTGTTCATACGTTAACTCAGAGTTTTTCAACCTCCCTCCACAACGCCA
CAAACCATTTTCGTCTTGGAACAAGTCCAATTGTTTCTTcaaatttgtaa
agtttttgccATTCTCCAAACCACGCTGGGAATCTTCAATCAATAGATTT
CTTGCAAGTTCCAATTCAACAATTGATAACACACCACCACAATCTTTATT
GTTAtgtattatttgttttgttttattatttatttgtttGGTTTCTATtg
tatcttcttcttctttcttgagCGTGATTTTACTCACGAAATGGATTGCC
CAAGCTAACACTCGGGATGTTTTACTAAAATCATTAAACTTTTTGTAATC
AATAATTTCACTAATATTGATTTTCGCTGCACTCAAATCAGTTGAGGCAG
GTGTAGCTGTAACAGAATTTGTATTAGTTTTAAAACTAAAACCTGGTTTT
AAATCTGGCCAGGCATTCTTCTTCTCAGTCAAGAACTGAGGTCCGTAAAA
CCACAATTCATTACGAGCAAGACCGAGAGGGTAATGTACCTTTGTCAAAA
TGTCAGAAGGATTAATCTCTGAAGGTACAAGTTTTAGGTGGGATAGAGGC
TTTTTAATGACAGTCTTAATTTTCTTCACTCTATCCTCTACATAACTGTC
CTCATTCTTTTTCTCATTCTGGACCCACGCACAAGCAATGGACGAATCTG
TCCAGTAGAAAGTTTCAGAAATATTGTAAGAGTTCTTAAGGGCTTCTATA
ACCGCAGGACCATGCGAAGTTGCCAAAAGGATACCATTTAATTCATTTCT
GGGAGTTGTATTGTGTTTTGACTTTAAGGTTTTAGCAGATATAATTCGAT
TTTTGGACGAAACAAGGGCTGTTTTTACACTACCAGACTCCAATACGAAT
CGTAAATATACTGCCGCTCCAAACATATATTTGGATGCGTCACTGAAAAT
ATGAGCTCCGACTGTTTTAATATTGTCATGGAGACTCTCTATACAATAGG
GACGATCAATTtcgattttgtcaattttgttaAATTCAAGGAGAATTTTT
TCCCAACGCTCAGTTAGTCTATCTGGTAAAATGTCATCCCAGTCAAATTT
TTCCTCACAGATATCTTGAAATAAAGTTTTAAACGAAACGAAAAGTGGGC
TTATCAGTCCCAAAGGATCATAAATCGAAGCCATGTTATGTAAAATAGCA
CGTTTGGTTGGCATGGCGACGAATTTTTCACGAAgctctcgaaaattgaa
ataaacGGTATCATTGTTTCTGTCCCAATTCAAACCTAGGACCTTTTGTT
CAGATGAAAATTCTTTATCCTCAGGAAATAAATCATAAACAATATTCTCT
AGTTCTCTATTGCTTGCTTTGAACTTTCTCAAATTAAACCCTCCATCGTG
GAGGTTTCTTTTTGAACTCATATAAAAGTCAACAGCTTCTTCAATTGTGT
TAGCTCCTGACGTCATATCATCGACatgtaaagaatttttcaacttCTCT
TTGTTTTCGAGAGAGTCTGTACAGTTTGTGATATGTTTGTTTAACGTGGC
TTGTAACAAAAAGGGGGATGCATTCAATCCAAATAAAACACGTGCAAAAC
GATATTCACaaagtttattttcttcaaaattttcgtaaTCGATACTGTGA
GGGTTTTCAAACCAAATAAAACGAACAAAATCTCTGTGTTCTGGTGTAAT
TCCTATCTGAAGGAAGGCTTTCTCGATATCAGCCGTAAATGCATAATTGT
AACTACGAAATCTCAATAAAACATCTCCAAGTAATTCTGTAATCGACGGG
CCAGGATTCAAAGTGTCATTTAAACTTTCTCCTCCCTTGTAACTTTTGCA
TGATGCATCAAATACTATTCTCACTTTCGTAGATTGTTTATCTTCTCTCA
CTACCGGTCTGTGCGGCAAGTAATGTGTTTGACCAATTTCGTAATGTTCA
ACTTTTTCGATCACCCCGGCGGAGAGCTGTTGTTGTAAAATCTCatcata
agttttcaaaaattctggGTTGTCTTTGAACTGTTTCTGAACCATATTTT
TCAAACGAATCTTACTTCTGGCGTAGTTGTCTCCCAAATTTGTAATCTCC
TCCTTGAAGGGTAACTTAATTTCATAATGACCATCTTTGAAAACTGTGTC
ACTTTCGAACTCATCAAGAATCTCTTGTACGTTGGGGTCACTTTTCGGGT
TTGTCTCAAAACACTTCGCGTAACTTTCTCTGATCTGTTCATCAGGACTA
AGACTTGTAGCACATTTCATCGTATGCGTACTAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003829-exon-sc0000031-1491911889:51811..54692 | TCONS_00003829-exon-sc0000031-1491911889:51811..54692 | Clytia hemisphaerica | exon |
| TCONS_00003829-exon-sc0000031-1510915933:51811..54692 | TCONS_00003829-exon-sc0000031-1510915933:51811..54692 | Clytia hemisphaerica | exon |
| TCONS_00003829-exon-sc0000031-1575043694:51811..54692 | TCONS_00003829-exon-sc0000031-1575043694:51811..54692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:51811..54692 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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