|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003803 ID=TCONS_00003803|Name=TCONS_00003803|organism=Clytia hemisphaerica|type=transcript|length=3245bpRun BLAST on NCBI protein sequence of TCONS_00003803-protein >TCONS_00003803-protein ID=TCONS_00003803-protein|Name=TCONS_00003803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp SSYLYAHDKIYKDKTIKTADTNLNKVNFVSSLEYNEYTYFFLREVAEGGDRun BLAST on NCBI transcript from alignment at sc0000031:523041..534449- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003803 ID=TCONS_00003803|Name=TCONS_00003803|organism=Clytia hemisphaerica|type=transcript|length=11409bp|location=Sequence derived from alignment at sc0000031:523041..534449- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000031:523041..534449- >TCONS_00003803 ID=TCONS_00003803|Name=TCONS_00003803|organism=Clytia hemisphaerica|type=CDS|length=26292bp|location=Sequence derived from alignment at sc0000031:523041..534449- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003803 vs. Swiss-Prot (Human)
Match: SEM5B (Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4) HSP 1 Score: 109.768 bits (273), Expect = 3.918e-24 Identity = 97/350 (27.71%), Postives = 160/350 (45.71%), Query Frame = 2
Query: 47 IKTADTN---LNKVNFVSSLEYNEYTYFFLREVAEGGDNRKHIYSRVARLCKYEEMTIFY--DQFNSFLKSQLICKKEGTLVPVYYDEIQATTEVRIGDEVYIYAVFSTSSEIGSDSALCRYNMKDISDTFY--YSKMSDPTGKSKDGVDMSNTRNKISRQDC--------NVNFTSTHGRVDQALVGEVSDNALLFQQVQPKNDKNEALFTLSTRFSSISSDQIKDNETGEITTVLFVGSVDGQVYKIVVENDKPR---LVEKIR--PFKTQGPIYKVEVYDD--MVYTGGPNGVAAFGVERCTSNVLCPDCLSNKDPYCGWVGTS---CVLASTSNIKRNVQEASQCP 1021
++TA N LN+ NFV++ + + YFFLRE A D + +YSRVAR+CK + F D + +F+K++L C + G VP YY+E+Q+ + ++ IY VF+T+ + SA+C +N+ IS F + +P N I C N N T + Q L L+ + VQP + + S RFS + D ++ +T + VL++G+ G + K + + +E++ P + P+ + + ++ G +GV +ERC + CL +DPYCGW G L +SN+ Q + CP
Sbjct: 272 LRTAQYNSKWLNEPNFVAAYDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGE-VPFYYNELQSA--FHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAA------WLPIANPIPNFQCGTLPETGPNENLTERSLQDAQRLF-------LMSEAVQPVTPE-PCVTQDSVRFSHLVVDLVQAKDT--LYHVLYIGTESGTILKALSTASRSLHGCYLEELHVLPPGRREPLRSLRILHSARALFVGLRDGVLRVPLERCAAYRSQGACLGARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITACP 602 The following BLAST results are available for this feature:
BLAST of TCONS_00003803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.